Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0060600 Salix brachista HOM05D005454 ORTHO05D006781 8.8e-72 273.5 135 100.0
Potri.008G081400 Populus trichocarpa HOM05D005454 ORTHO05D006781 2.4e-61 238.8 135 88.9
Manes.16G045300 Manihot esculenta HOM05D005454 ORTHO05D006781 4.3e-58 228.0 133 83.5
Atru.chr1.44 Acer truncatum HOM05D005454 ORTHO05D006781 2.8e-57 225.3 135 80.7
Sabra10G0134500 Salix brachista HOM05D005454 ORTHO05D006781 2.0e-55 219.2 134 82.1
CiPaw.15G112200 Carya illinoinensis HOM05D005454 ORTHO05D006781 3.4e-55 218.4 133 77.4
MD10G1217600 Malus domestica HOM05D005454 ORTHO05D006781 7.5e-55 217.2 127 81.1
Prupe.4G126700 Prunus persica HOM05D005454 ORTHO05D006781 1.3e-54 216.5 127 81.1
Migut.M01498 Erythranthe guttata HOM05D005454 ORTHO05D006781 2.9e-54 215.3 127 81.1
TWI38G1327 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 2.9e-54 215.3 135 77.8
TWI59G0830 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 2.9e-54 215.3 135 77.8
TAR626G0894 Trochodendron aralioides HOM05D005454 ORTHO05D006781 1.1e-53 213.4 127 80.3
QL04p094645 Quercus lobata HOM05D005454 ORTHO05D006781 1.4e-53 213.0 133 78.2
QL04p094846 Quercus lobata HOM05D005454 ORTHO05D006781 1.4e-53 213.0 133 78.2
Oeu029453.1 Olea europaea HOM05D005454 ORTHO05D006781 5.4e-53 211.1 127 79.5
Actinidia00854 Actinidia chinensis HOM05D005454 ORTHO05D006781 7.0e-53 210.7 127 80.3
CsaV3_6G013400 Cucumis sativus L. HOM05D005454 ORTHO05D006781 7.0e-53 210.7 133 76.7
Thecc.02G245200 Theobroma cacao HOM05D005454 ORTHO05D006781 7.0e-53 210.7 131 77.9
Peaxi162Scf00286g00452 Petunia axillaris HOM05D005454 ORTHO05D006781 9.2e-53 210.3 127 78.0
Nitab4.5_0006630g0030 Nicotiana tabacum HOM05D005454 ORTHO05D006781 1.2e-52 209.9 127 78.0
A07p27170 Brassica napus HOM05D005454 ORTHO05D006781 1.6e-52 209.5 126 77.8
ClCG02G018790 Citrullus lanatus HOM05D005454 ORTHO05D006781 2.0e-52 209.1 133 76.7
BcaC08g45360 Brassica carinata HOM05D005454 ORTHO05D006781 2.7e-52 208.8 126 77.8
C06p29920 Brassica napus HOM05D005454 ORTHO05D006781 2.7e-52 208.8 126 77.8
BraA07t30361Z Brassica rapa HOM05D005454 ORTHO05D006781 2.7e-52 208.8 126 77.8
Duzib251G0225 Durio zibethinus HOM05D005454 ORTHO05D006781 2.7e-52 208.8 131 77.1
Eucgr.F04477 Eucalyptus grandis HOM05D005454 ORTHO05D006781 2.7e-52 208.8 119 83.2
GSVIVG01036708001 Vitis vinifera HOM05D005454 ORTHO05D006781 2.7e-52 208.8 127 81.1
Nn7g38402 Nelumbo nucifera HOM05D005454 ORTHO05D006781 4.6e-52 208.0 127 78.7
BolC6t38153H Brassica oleracea HOM05D005454 ORTHO05D006781 7.8e-52 207.2 126 77.8
Nitab4.5_0004200g0060 Nicotiana tabacum HOM05D005454 ORTHO05D006781 1.0e-51 206.8 127 77.2
SGA_v2.0_scaffold186G40175 Striga asiatica HOM05D005454 ORTHO05D006781 1.0e-51 206.8 115 84.3
BraA07t31955Z Brassica rapa HOM05D005454 ORTHO05D006781 1.3e-51 206.5 126 77.0
BcaB02g07212 Brassica carinata HOM05D005454 ORTHO05D006781 1.7e-51 206.1 126 77.0
BcaC08g47498 Brassica carinata HOM05D005454 ORTHO05D006781 1.7e-51 206.1 126 77.0
C06p53270 Brassica napus HOM05D005454 ORTHO05D006781 1.7e-51 206.1 126 77.0
BolC6t40345H Brassica oleracea HOM05D005454 ORTHO05D006781 1.7e-51 206.1 126 77.0
Gohir.A02G014000 Gossypium hirsutum HOM05D005454 ORTHO05D006781 1.7e-51 206.1 134 76.1
Gohir.D01G133900 Gossypium hirsutum HOM05D005454 ORTHO05D006781 1.7e-51 206.1 127 78.0
RcHm_v2.0_Chr5g0023201 Rosa chinensis HOM05D005454 ORTHO05D006781 1.7e-51 206.1 127 78.7
Sed0024280 Sechium edule HOM05D005454 ORTHO05D006781 1.7e-51 206.1 135 76.3
Gorai.002G165600 Gossypium raimondii HOM05D005454 ORTHO05D006781 2.3e-51 205.7 134 76.1
THA.LOC104808143 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 2.3e-51 205.7 120 80.8
COL.COLO4_19518 Corchorus olitorius HOM05D005454 ORTHO05D006781 3.0e-51 205.3 127 77.2
Aqoxy1G01376 Aquilegia oxysepala HOM05D005454 ORTHO05D006781 3.9e-51 204.9 129 75.2
CAN.G710.29 Capsicum annuum HOM05D005454 ORTHO05D006781 3.9e-51 204.9 127 74.8
CiPaw.15G112600 Carya illinoinensis HOM05D005454 ORTHO05D006781 3.9e-51 204.9 151 67.5
PSO675G7587 Papaver somniferum HOM05D005454 ORTHO05D006781 3.9e-51 204.9 114 84.2
AT1G79390 Arabidopsis thaliana HOM05D005454 ORTHO05D006781 5.0e-51 204.5 126 77.0
Thhalv10019255m.g Eutrema salsugineum HOM05D005454 ORTHO05D006781 5.0e-51 204.5 127 74.8
Cc00_g09040 Coffea canephora HOM05D005454 ORTHO05D006781 8.6e-51 203.8 127 76.4
Solyc09g098140.4 Solanum lycopersicum HOM05D005454 ORTHO05D006781 3.3e-50 201.8 127 73.2
Sopen09g036090 Solanum pennellii HOM05D005454 ORTHO05D006781 3.3e-50 201.8 127 73.2
AL2G40000 Arabidopsis lyrata HOM05D005454 ORTHO05D006781 4.3e-50 201.4 123 77.2
Ciclev10006210m.g Citrus clementina HOM05D005454 ORTHO05D006781 4.3e-50 201.4 127 76.4
vmacro09764 Vaccinium macrocarpon HOM05D005454 ORTHO05D006781 4.3e-50 201.4 127 74.8
PGSC0003DMG400011901 Solanum tuberosum HOM05D005454 ORTHO05D006781 5.6e-50 201.1 127 72.4
THA.LOC104812391 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 5.6e-50 201.1 122 77.9
Aa31LG4G1640 Aethionema arabicum HOM05D005454 ORTHO05D006781 7.3e-50 200.7 126 73.8
Carub.0002s2625 Capsella rubella HOM05D005454 ORTHO05D006781 7.3e-50 200.7 126 75.4
Duzib248G0167 Durio zibethinus HOM05D005454 ORTHO05D006781 9.5e-50 200.3 134 73.9
FvH4_3g13970 Fragaria vesca HOM05D005454 ORTHO05D006781 1.6e-49 199.5 127 77.2
FAN11G3450 Fragaria x ananassa HOM05D005454 ORTHO05D006781 1.6e-49 199.5 127 77.2
SalBow8G4406 Salvia bowleyana HOM05D005454 ORTHO05D006781 2.1e-49 199.1 127 73.2
CiPaw.15G112400 Carya illinoinensis HOM05D005454 ORTHO05D006781 2.8e-49 198.7 147 67.3
FAN16G0850 Fragaria x ananassa HOM05D005454 ORTHO05D006781 2.8e-49 198.7 127 76.4
FAN21G1174 Fragaria x ananassa HOM05D005454 ORTHO05D006781 2.8e-49 198.7 127 76.4
SalBow8G5040 Salvia bowleyana HOM05D005454 ORTHO05D006781 3.6e-49 198.4 119 77.3
HanXRQChr13g0408901 Helianthus annuus HOM05D005454 ORTHO05D006781 4.7e-49 198.0 114 78.9
HanXRQChr13g0408931 Helianthus annuus HOM05D005454 ORTHO05D006781 4.7e-49 198.0 114 78.9
CANSAT56G1199 Cannabis sativa HOM05D005454 ORTHO05D006781 6.2e-49 197.6 124 76.6
CANSAT56G0738 Cannabis sativa HOM05D005454 ORTHO05D006781 8.1e-49 197.2 135 71.9
Cpa.g.sc32.137 Carica papaya HOM05D005454 ORTHO05D006781 8.1e-49 197.2 120 76.7
Rhsim04G0003500 Rhododendron simsii HOM05D005454 ORTHO05D006781 1.4e-48 196.4 143 67.8
MSTRG.16083 Avicennia marina HOM05D005454 ORTHO05D006781 1.8e-48 196.1 120 77.5
Lsat_1_v5_gn_5_184081 Lactuca sativa HOM05D005454 ORTHO05D006781 1.8e-48 196.1 113 81.4
MD05G1239400 Malus domestica HOM05D005454 ORTHO05D006781 1.8e-48 196.1 117 79.5
FAN25G3791 Fragaria x ananassa HOM05D005454 ORTHO05D006781 8.9e-48 193.7 128 75.0
ATR0820G041 Amborella trichopoda HOM05D005454 ORTHO05D006781 5.8e-47 191.0 114 78.9
Dinv42456 Davidia involucrata HOM05D005454 ORTHO05D006781 1.3e-46 189.9 118 78.0
ECA240G0828 Erigeron canadensis HOM05D005454 ORTHO05D006781 1.3e-46 189.9 117 76.1
Glyma.11G026500 Glycine max HOM05D005454 ORTHO05D006781 4.9e-46 188.0 121 75.2
Lj3g0001328 Lotus japonicus HOM05D005454 ORTHO05D006781 8.3e-46 187.2 118 75.4
Ah.02g115510 Amaranthus hybridus HOM05D005454 ORTHO05D006781 1.4e-45 186.4 122 73.0
PGR102G3369 Punica granatum HOM05D005454 ORTHO05D006781 1.4e-45 186.4 120 71.7
Glyma.01G216400 Glycine max HOM05D005454 ORTHO05D006781 1.9e-45 186.0 118 75.4
unitig_32.g11075 Utricularia gibba HOM05D005454 ORTHO05D006781 1.9e-45 186.0 114 74.6
Zm00001eb241290 Zea mays HOM05D005454 ORTHO05D006781 1.9e-45 186.0 115 76.5
Hund10936 Selenicereus undatus HOM05D005454 ORTHO05D006781 2.4e-45 185.7 125 71.2
Sc18g0003140 Simmondsia chinensis HOM05D005454 ORTHO05D006781 4.1e-45 184.9 117 76.1
MELO3C019617.2 Cucumis melo HOM05D005454 ORTHO05D006781 7.1e-45 184.1 150 64.0
Os02g0495900 Oryza sativa ssp. japonica HOM05D005454 ORTHO05D006781 1.6e-44 183.0 135 67.4
Phvul.002G154100 Phaseolus vulgaris HOM05D005454 ORTHO05D006781 1.6e-44 183.0 118 72.9
VMungo1215G2509 Vigna mungo HOM05D005454 ORTHO05D006781 2.7e-44 182.2 118 72.9
Lalb_Chr03g0031911 Lupinus albus HOM05D005454 ORTHO05D006781 6.0e-44 181.0 118 71.2
EL10Ac5g12502 Beta vulgaris HOM05D005454 ORTHO05D006781 2.3e-43 179.1 125 69.6
Medtr8g447300 Medicago truncatula HOM05D005454 ORTHO05D006781 3.0e-43 178.7 118 72.9
MBI13_g09219_MAGBIO Magnolia biondii HOM05D005454 ORTHO05D006781 5.1e-43 177.9 131 71.0
AUR62030518 Chenopodium quinoa HOM05D005454 ORTHO05D006781 1.1e-42 176.8 127 69.3
AUR62030774 Chenopodium quinoa HOM05D005454 ORTHO05D006781 1.5e-42 176.4 127 68.5
Psat4g141200 Pisum sativum HOM05D005454 ORTHO05D006781 1.5e-42 176.4 118 72.9
arahy.Tifrunner.gnm1.ann1.DLUG3E Arachis hypogaea HOM05D005454 ORTHO05D006781 1.2e-41 173.3 123 69.1
TPR.G8202 Trifolium pratense HOM05D005454 ORTHO05D006781 1.2e-41 173.3 107 73.8
arahy.Tifrunner.gnm1.ann1.TLTS2V Arachis hypogaea HOM05D005454 ORTHO05D006781 2.8e-41 172.2 126 67.5
Ca_26272_v3 Cicer arietinum L. HOM05D005454 ORTHO05D006781 1.1e-40 170.2 126 66.7
SEGI_00588 Sequoiadendron giganteum HOM05D005454 ORTHO05D006781 4.0e-40 168.3 116 67.2
Sp5g34440 Schrenkiella parvula HOM05D005454 ORTHO05D006781 5.4e-29 131.3 83 75.9
CDE02G1314 Ceratophyllum demersum HOM05D000236 ORTHO05D000192 1.2e-28 130.2 93 71.0
Pp3c27_5100 Physcomitrium patens HOM05D005454 ORTHO05D006781 1.1e-26 123.6 112 52.7
Gohir.A03G171875 Gossypium hirsutum HOM05D005454 ORTHO05D006781 1.3e-25 120.2 73 75.3
Haze_01788 Corylus avellana HOM05D005454 ORTHO05D006781 6.9e-24 114.4 72 69.4
Mapoly0011s0156 Marchantia polymorpha HOM05D005454 ORTHO05D006781 2.0e-23 112.8 112 49.1
AagrBONN_evm.TU.Sc2ySwM_117.1988 Anthoceros agrestis HOM05D005454 ORTHO05D006781 2.6e-23 112.5 112 49.1
A07p44460 Brassica napus HOM05D005454 ORTHO05D006781 2.6e-23 112.5 68 72.1
Hma1.2p1_0151F.1_g066990 Hydrangea macrophylla HOM05D005454 ORTHO05D006781 3.4e-23 112.1 68 73.5
CSS0036802 Camellia sinensis var. sinensis HOM05D005454 ORTHO05D006781 4.5e-23 111.7 67 77.6
Cfa017755 Carpinus fangiana HOM05D005454 ORTHO05D006781 5.8e-23 111.3 68 72.1
Potri.010G174700 Populus trichocarpa HOM05D005454 ORTHO05D006781 5.8e-23 111.3 67 83.6
Haze_08480 Corylus avellana HOM05D005454 ORTHO05D006781 7.6e-23 110.9 68 70.6
Haze_18487 Corylus avellana HOM05D005454 ORTHO05D006781 7.6e-23 110.9 67 73.1
HPP92_015989 Vanilla planifolia HOM05D005454 ORTHO05D006781 9.9e-23 110.5 75 66.7
Cfa017757 Carpinus fangiana HOM05D005454 ORTHO05D006781 6.4e-22 107.8 65 83.1
Atru.chr1.31 Acer truncatum HOM05D005454 ORTHO05D006781 2.4e-21 105.9 89 64.0
Nn7g38396 Nelumbo nucifera HOM05D005454 ORTHO05D006781 2.1e-20 102.8 77 61.0
QL04p094659 Quercus lobata HOM05D005454 ORTHO05D006781 1.0e-19 100.5 66 78.8
CARHR073040 Cardamine hirsuta HOM05D005454 ORTHO05D006781 1.8e-19 99.8 59 74.6
CARHR073050 Cardamine hirsuta HOM05D005454 ORTHO05D006781 1.1e-18 97.1 57 82.5
CBR_g2846 Chara braunii HOM05D005454 ORTHO05D006781 1.5e-18 96.7 114 43.0
Actinidia03633 Actinidia chinensis HOM05D005454 ORTHO05D012925 2.5e-18 95.9 60 76.7
BolC8t48807H Brassica oleracea HOM05D005454 ORTHO05D006781 4.3e-18 95.1 59 78.0
CDE04G2596 Ceratophyllum demersum HOM05D005454 ORTHO05D006781 8.1e-17 90.9 71 60.6
DCAR_013713 Daucus carota HOM05D005454 ORTHO05D006781 8.1e-17 90.9 108 45.4
Gohir.A04G138000 Gossypium hirsutum HOM05D005454 ORTHO05D006781 2.6e-15 85.9 57 75.4
RcHm_v2.0_Chr5g0023191 Rosa chinensis HOM05D005454 ORTHO05D006781 7.6e-15 84.3 75 57.3
Cc00_g28770 Coffea canephora HOM05D001769 ORTHO05D001695 9.9e-15 84.0 58 69.0
BcaC08g42854 Brassica carinata HOM05D005454 ORTHO05D006781 1.4e-13 80.1 59 66.1
C06p00690 Brassica napus HOM05D005454 ORTHO05D006781 1.9e-13 79.7 51 74.5
BolC6t35206H Brassica oleracea HOM05D005454 ORTHO05D006781 1.9e-13 79.7 51 74.5
C03p71170 Brassica napus HOM05D005454 ORTHO05D006781 4.2e-13 78.6 51 72.5
SMO367G0923 Selaginella moellendorffii HOM05D005454 ORTHO05D006781 1.0e-11 73.9 116 37.9
SGA_v2.0_scaffold29G12256 Striga asiatica HOM05D005454 ORTHO05D006781 1.1e-10 70.5 45 71.1
QL04p094979 Quercus lobata HOM05D000510 ORTHO05D001548 3.4e-07 58.9 45 66.7


User provided reference genes

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