Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0057900 Salix brachista HOM05D005855 ORTHO05D006406 0.0e+00 1466.4 840 100.0
Potri.008G077800 Populus trichocarpa HOM05D005855 ORTHO05D006406 0.0e+00 1339.7 841 92.9
Potri.002G209795 Populus trichocarpa HOM05D005855 ORTHO05D006406 2.0e-262 909.4 678 81.0
Manes.13G000700 Manihot esculenta HOM05D005855 ORTHO05D006406 9.2e-244 847.4 852 65.3
Dinv17130 Davidia involucrata HOM05D005855 ORTHO05D006406 5.4e-228 795.0 826 62.6
QL01p051691 Quercus lobata HOM05D005855 ORTHO05D006406 1.1e-225 787.3 824 62.4
QL01p051722 Quercus lobata HOM05D005855 ORTHO05D006406 5.6e-225 785.0 824 62.3
Prupe.6G365000 Prunus persica HOM05D005855 ORTHO05D006406 4.8e-216 755.4 852 58.8
MD12G1261700 Malus domestica HOM05D005855 ORTHO05D006406 4.6e-211 738.8 848 58.4
Ciclev10000302m.g Citrus clementina HOM05D005855 ORTHO05D006406 7.9e-211 738.0 836 59.8
TAR633G1091 Trochodendron aralioides HOM05D005855 ORTHO05D006406 2.5e-209 733.0 837 57.5
RcHm_v2.0_Chr3g0447421 Rosa chinensis HOM05D005855 ORTHO05D006406 4.8e-208 728.8 840 58.0
Atru.chr2.218 Acer truncatum HOM05D005855 ORTHO05D006406 1.8e-207 726.9 836 59.0
FAN14G2818 Fragaria x ananassa HOM05D005855 ORTHO05D006406 3.1e-207 726.1 827 58.6
FvH4_6g00081 Fragaria vesca HOM05D005855 ORTHO05D006406 2.0e-206 723.4 827 58.5
Rhsim04G0133000 Rhododendron simsii HOM05D005855 ORTHO05D006406 2.0e-206 723.4 840 57.0
Haze_04608 Corylus avellana HOM05D005855 ORTHO05D006406 5.0e-205 718.8 902 52.7
CiPaw.08G111900 Carya illinoinensis HOM05D005855 ORTHO05D006406 8.4e-205 718.0 837 55.9
Duzib177G0112 Durio zibethinus HOM05D005855 ORTHO05D006406 8.4e-205 718.0 853 59.3
CsaV3_2G010280 Cucumis sativus L. HOM05D005855 ORTHO05D006406 1.1e-204 717.6 848 57.0
FAN02G1917 Fragaria x ananassa HOM05D005855 ORTHO05D006406 4.2e-204 715.7 827 57.9
Actinidia19643 Actinidia chinensis HOM05D005855 ORTHO05D006406 2.7e-203 713.0 810 59.1
MELO3C008612.2 Cucumis melo HOM05D005855 ORTHO05D006406 6.7e-202 708.4 848 57.0
Gorai.002G148000 Gossypium raimondii HOM05D005855 ORTHO05D006406 1.6e-200 703.7 846 55.7
Gohir.A13G090000 Gossypium hirsutum HOM05D005855 ORTHO05D006406 4.8e-200 702.2 846 56.0
vmacro08871 Vaccinium macrocarpon HOM05D005855 ORTHO05D006406 1.0e-197 694.5 866 52.8
MD00G1017400 Malus domestica HOM05D005855 ORTHO05D006406 2.2e-197 693.3 852 54.9
TWI18G0231 Tripterygium wilfordii HOM05D005855 ORTHO05D006406 3.8e-197 692.6 845 54.9
COL.COLO4_22931 Corchorus olitorius HOM05D005855 ORTHO05D006406 7.2e-196 688.3 851 56.8
FAN09G4305 Fragaria x ananassa HOM05D005855 ORTHO05D006406 9.4e-196 688.0 852 56.2
ClCG11G010010 Citrullus lanatus HOM05D005855 ORTHO05D006406 1.2e-195 687.6 848 55.9
TAR362G1086 Trochodendron aralioides HOM05D005855 ORTHO05D006406 2.7e-195 686.4 833 55.6
THA.LOC104805689 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 3.6e-195 686.0 826 55.7
Gohir.A02G107108 Gossypium hirsutum HOM05D005855 ORTHO05D006406 6.1e-195 685.3 847 57.1
Peaxi162Scf00254g00712 Petunia axillaris HOM05D005855 ORTHO05D006406 5.1e-194 682.2 854 56.0
Thecc.05G112200 Theobroma cacao HOM05D005855 ORTHO05D006406 5.1e-194 682.2 769 61.0
PGSC0003DMG400016248 Solanum tuberosum HOM05D005855 ORTHO05D006406 7.4e-193 678.3 848 56.7
CANSAT64G2413 Cannabis sativa HOM05D005855 ORTHO05D006406 6.3e-192 675.2 848 56.6
Sopen11g004450 Solanum pennellii HOM05D005855 ORTHO05D006406 2.0e-190 670.2 847 56.0
Sed0023015 Sechium edule HOM05D005855 ORTHO05D006406 2.6e-190 669.8 848 55.8
Solyc11g008670.2 Solanum lycopersicum HOM05D005855 ORTHO05D006406 4.5e-190 669.1 847 56.1
Lj8C197T11 Lonicera japonica HOM05D005855 ORTHO05D006406 8.5e-189 664.8 853 57.1
Nitab4.5_0003928g0050 Nicotiana tabacum HOM05D005855 ORTHO05D006406 5.5e-188 662.1 879 54.2
Glyma.18G244800 Glycine max HOM05D005855 ORTHO05D006406 7.2e-188 661.8 827 50.2
Gohir.D03G072500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 2.3e-186 656.8 835 55.9
Lalb_Chr03g0038151 Lupinus albus HOM05D005855 ORTHO05D006406 1.1e-185 654.4 846 48.8
Glyma.09G248000 Glycine max HOM05D005855 ORTHO05D006406 1.5e-185 654.1 847 50.9
Gorai.003G087300 Gossypium raimondii HOM05D005855 ORTHO05D006406 3.3e-185 652.9 837 55.9
PGR031G3878 Punica granatum HOM05D005855 ORTHO05D006406 3.3e-185 652.9 805 56.5
Gohir.D13G093500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 1.7e-184 650.6 848 53.9
THA.LOC104822010 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 4.8e-184 649.0 824 48.9
Ca_08015_v3 Cicer arietinum L. HOM05D005855 ORTHO05D006406 6.3e-184 648.7 853 49.0
Lj1g0024601 Lotus japonicus HOM05D005855 ORTHO05D006406 1.1e-183 647.9 805 50.2
Phvul.008G051800 Phaseolus vulgaris HOM05D005855 ORTHO05D006406 1.1e-183 647.9 846 47.6
CAN.G321.5 Capsicum annuum HOM05D005855 ORTHO05D006406 1.8e-183 647.1 841 55.4
Nitab4.5_0001003g0160 Nicotiana tabacum HOM05D005855 ORTHO05D006406 5.3e-183 645.6 881 51.1
MSTRG.8191 Avicennia marina HOM05D005855 ORTHO05D006406 3.5e-182 642.9 843 54.1
Hund21931 Selenicereus undatus HOM05D005855 ORTHO05D006406 1.7e-181 640.6 820 52.7
AUR62000270 Chenopodium quinoa HOM05D005855 ORTHO05D006406 5.0e-181 639.0 835 54.4
Oeu034710.1 Olea europaea HOM05D005855 ORTHO05D006406 1.4e-178 630.9 844 53.0
Thhalv10018127m.g Eutrema salsugineum HOM05D005855 ORTHO05D006406 2.6e-177 626.7 830 54.3
Cc09_g04110 Coffea canephora HOM05D005855 ORTHO05D006406 4.4e-177 625.9 857 53.4
TPR.G31229 Trifolium pratense HOM05D005855 ORTHO05D006406 4.4e-177 625.9 837 50.4
ECA232G0592 Erigeron canadensis HOM05D005855 ORTHO05D006406 9.7e-177 624.8 828 51.7
CARHR057120 Cardamine hirsuta HOM05D005855 ORTHO05D006406 2.8e-176 623.2 810 53.8
VMungo1383G1707 Vigna mungo HOM05D005855 ORTHO05D006406 2.0e-174 617.1 843 47.7
TWI36G1346 Tripterygium wilfordii HOM05D000941 ORTHO05D006406 5.9e-174 615.5 806 53.5
Aa31LG2G2480 Aethionema arabicum HOM05D005855 ORTHO05D006406 1.3e-173 614.4 819 50.1
Sp5g20320 Schrenkiella parvula HOM05D005855 ORTHO05D006406 2.9e-173 613.2 810 54.4
Sc16g0010640 Simmondsia chinensis HOM05D005855 ORTHO05D006406 2.9e-173 613.2 774 55.3
Migut.F01842 Erythranthe guttata HOM05D005855 ORTHO05D006406 4.2e-172 609.4 852 51.9
MBI07_g11487_MAGBIO Magnolia biondii HOM05D005855 ORTHO05D006406 5.5e-172 609.0 860 49.3
DCAR_031596 Daucus carota HOM05D005855 ORTHO05D006406 9.4e-172 608.2 827 51.6
Psat3g103080 Pisum sativum HOM05D005855 ORTHO05D006406 6.8e-170 602.1 858 49.8
Ah.04g159310 Amaranthus hybridus HOM05D005855 ORTHO05D006406 1.3e-168 597.8 814 51.7
AL2G22160 Arabidopsis lyrata HOM05D005855 ORTHO05D006406 4.8e-168 595.9 822 53.0
Eucgr.B01457 Eucalyptus grandis HOM05D005855 ORTHO05D006406 4.8e-168 595.9 686 62.1
arahy.Tifrunner.gnm1.ann1.VEFL47 Arachis hypogaea HOM05D005855 ORTHO05D006406 8.3e-168 595.1 837 50.1
Actinidia07922 Actinidia chinensis HOM05D005855 ORTHO05D006406 2.9e-165 586.6 709 53.3
HanXRQChr16g0511741 Helianthus annuus HOM05D005855 ORTHO05D006406 2.9e-165 586.6 837 52.8
Medtr7g080500 Medicago truncatula HOM05D005855 ORTHO05D006406 8.5e-165 585.1 811 46.7
AT1G65470 Arabidopsis thaliana HOM05D005855 ORTHO05D006406 2.5e-164 583.6 796 53.3
AUR62006618 Chenopodium quinoa HOM05D005855 ORTHO05D006406 2.5e-164 583.6 823 51.0
Aqoxy2G04154 Aquilegia oxysepala HOM05D005855 ORTHO05D006406 2.0e-161 573.9 833 45.3
Lalb_Chr21g0311491 Lupinus albus HOM05D005855 ORTHO05D006406 3.4e-161 573.2 773 47.3
EL10Ac4g10026 Beta vulgaris HOM05D005855 ORTHO05D006406 4.4e-161 572.8 820 51.8
Lsat_1_v5_gn_0_14480 Lactuca sativa HOM05D005855 ORTHO05D006406 7.5e-161 572.0 818 51.5
SGA_v2.0_scaffold340G49313 Striga asiatica HOM05D005855 ORTHO05D006406 1.3e-160 571.2 862 50.2
QL01p051710 Quercus lobata HOM05D005855 ORTHO05D006406 1.0e-157 561.6 485 62.9
Carub.0002s1120 Capsella rubella HOM05D005855 ORTHO05D006406 3.0e-154 550.1 840 50.1
PSO017G4019 Papaver somniferum HOM05D005855 ORTHO05D006406 8.3e-152 542.0 847 49.6
SGA_v2.0_scaffold122G33208 Striga asiatica HOM05D005855 ORTHO05D006406 8.3e-152 542.0 857 47.5
PSO573G0046 Papaver somniferum HOM05D005855 ORTHO05D006406 1.2e-150 538.1 850 49.2
C06p39070 Brassica napus HOM05D005855 ORTHO05D006406 5.0e-149 532.7 807 49.4
BraA07t30911Z Brassica rapa HOM05D005855 ORTHO05D006406 5.0e-149 532.7 807 49.1
A07p32840 Brassica napus HOM05D005855 ORTHO05D006406 6.6e-149 532.3 807 49.1
BolC6t38999H Brassica oleracea HOM05D005855 ORTHO05D006406 1.9e-148 530.8 807 49.4
Oeu001220.3 Olea europaea HOM05D005855 ORTHO05D006406 3.6e-147 526.6 758 52.4
Actinidia31264 Actinidia chinensis HOM05D005855 ORTHO05D006406 2.6e-145 520.4 883 43.6
unitig_749.g13497 Utricularia gibba HOM05D005855 ORTHO05D006406 1.2e-134 485.0 832 47.0
ATR0743G043 Amborella trichopoda HOM05D005855 ORTHO05D006406 3.1e-122 443.7 884 42.6
Os01g0896300 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 2.0e-121 441.0 860 45.9
Zm00001eb365740 Zea mays HOM05D005855 ORTHO05D006406 2.0e-121 441.0 915 43.4
Zm00001eb144810 Zea mays HOM05D005855 ORTHO05D006406 7.3e-116 422.5 937 42.5
arahy.Tifrunner.gnm1.ann1.65FHJK Arachis hypogaea HOM05D005855 ORTHO05D006406 4.8e-115 419.9 477 53.0
HPP92_024393 Vanilla planifolia HOM05D005855 ORTHO05D006406 5.1e-109 399.8 821 43.6
CDE04G3007 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 1.2e-102 378.6 769 42.7
SEGI_12971 Sequoiadendron giganteum HOM05D005855 ORTHO05D006406 5.0e-88 330.1 874 35.5
Zm00001eb304780 Zea mays HOM05D005855 ORTHO05D006406 1.6e-86 325.1 840 34.9
CDE02G2532 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 2.2e-83 314.7 588 47.4
Cpa.g.sc88.1 Carica papaya HOM05D005855 ORTHO05D006406 5.1e-77 293.5 586 36.3
GSVIVG01007185001 Vitis vinifera HOM05D005855 ORTHO05D006406 6.9e-74 283.1 257 58.4
arahy.Tifrunner.gnm1.ann1.8C47BX Arachis hypogaea HOM05D005855 ORTHO05D006406 3.1e-66 257.7 481 38.3
arahy.Tifrunner.gnm1.ann1.F2WWIZ Arachis hypogaea HOM05D005855 ORTHO05D006406 1.3e-64 252.3 484 38.4
Os07g0273301 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 2.0e-60 238.4 458 37.3
Dinv29076 Davidia involucrata HOM05D005855 ORTHO05D006406 5.5e-55 220.3 833 26.9
AagrBONN_evm.TU.Sc2ySwM_344.4907 Anthoceros agrestis HOM05D005855 ORTHO05D006406 1.8e-53 215.3 827 29.5
arahy.Tifrunner.gnm1.ann1.X0XBNQ Arachis hypogaea HOM05D005855 ORTHO05D006406 2.8e-43 181.4 194 54.6
Cpa.g.c37190 Carica papaya HOM05D005855 ORTHO05D006406 5.6e-39 167.2 187 49.2
Pp3c3_24970 Physcomitrium patens HOM05D005855 ORTHO05D006406 8.0e-38 163.3 374 34.2
SMO356G0323 Selaginella moellendorffii HOM05D005855 ORTHO05D006406 3.0e-37 161.4 438 32.2
Mapoly0189s0010 Marchantia polymorpha HOM05D005855 ORTHO05D006406 6.4e-35 153.7 748 29.8
GSVIVG01007186001 Vitis vinifera HOM05D005855 ORTHO05D006406 3.0e-32 144.8 111 62.2
VMungo1383G0582 Vigna mungo HOM05D005855 ORTHO05D000818 8.6e-32 143.3 227 39.6
Zm00001eb310680 Zea mays HOM05D000012 ORTHO05D006406 2.3e-24 118.6 276 34.1
TPR.G32502 Trifolium pratense HOM05D005855 ORTHO05D006406 3.0e-24 118.2 152 47.4
CBR_g39948 Chara braunii HOM05D005855 ORTHO05D006406 1.9e-23 115.5 175 42.3
Zm00001eb381860 Zea mays HOM05D000012 ORTHO05D006406 1.2e-14 86.3 70 61.4
Nn8g40536 Nelumbo nucifera HOM05D005855 ORTHO05D006406 8.9e-13 80.1 66 57.6
Lju170A31T10 Lonicera japonica HOM05D016202 ORTHO05D006406 1.1e-10 73.2 79 53.2
Lju1034A2T22 Lonicera japonica HOM05D016202 ORTHO05D006406 1.9e-10 72.4 70 57.1
RcHm_v2.0_Chr5g0011851 Rosa chinensis HOM05D005855 ORTHO05D006406 3.2e-10 71.6 47 74.5
Lju114A5T28 Lonicera japonica HOM05D005855 ORTHO05D006406 4.1e-10 71.2 301 28.2
Lju1609C0G6 Lonicera japonica HOM05D016202 ORTHO05D006406 5.4e-10 70.9 68 57.4
Zm00001eb367440 Zea mays HOM05D005855 ORTHO05D006406 2.1e-09 68.9 116 39.7
Lj9A5T14 Lonicera japonica HOM05D016202 ORTHO05D006406 3.5e-09 68.2 69 55.1
Lju1609C0T10 Lonicera japonica HOM05D005855 ORTHO05D006406 1.1e-07 63.2 69 53.6
Ah.06g195260 Amaranthus hybridus HOM05D005855 ORTHO05D006406 2.1e-06 58.9 132 31.1
Cre12.g550152 Chlamydomonas reinhardtii HOM05D005855 ORTHO05D006406 4.7e-06 57.8 161 33.5
Lju170A28T4 Lonicera japonica HOM05D016202 ORTHO05D006406 6.2e-06 57.4 58 56.9
Ah.06g195240 Amaranthus hybridus HOM05D000941 ORTHO05D000882 8.1e-06 57.0 81 38.3


User provided reference genes

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