Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0053900 Salix brachista HOM05D003877 ORTHO05D004647 0.0e+00 1190.6 583 100.0
Potri.008G072600 Populus trichocarpa HOM05D003877 ORTHO05D004647 3.4e-229 798.5 519 79.2
Potri.010G184600 Populus trichocarpa HOM05D003877 ORTHO05D004647 1.0e-217 760.4 524 74.4
Sabra10G0141800 Salix brachista HOM05D003877 ORTHO05D004647 1.0e-209 733.8 557 68.4
Manes.10G009000 Manihot esculenta HOM05D003877 ORTHO05D004647 1.3e-199 700.3 518 68.5
Dinv10589 Davidia involucrata HOM05D003877 ORTHO05D004647 4.5e-197 691.8 521 65.8
Thecc.10G011300 Theobroma cacao HOM05D003877 ORTHO05D004647 6.1e-194 681.4 521 64.9
TWI73G0349 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 1.4e-193 680.2 524 66.4
Ciclev10031326m.g Citrus clementina HOM05D003877 ORTHO05D004647 5.1e-193 678.3 518 65.8
TWI09G1304 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 6.7e-193 677.9 505 67.7
Duzib106G1591 Durio zibethinus HOM05D003877 ORTHO05D004647 4.4e-192 675.2 520 64.6
GSVIVG01032758001 Vitis vinifera HOM05D003877 ORTHO05D004647 1.1e-190 670.6 526 64.1
PGR142G4288 Punica granatum HOM05D003877 ORTHO05D004647 1.8e-190 669.8 524 64.7
Manes.07G134500 Manihot esculenta HOM05D003877 ORTHO05D004647 4.1e-190 668.7 531 65.2
Gorai.012G079000 Gossypium raimondii HOM05D003877 ORTHO05D004647 5.3e-190 668.3 521 63.9
Ca_15152_v3 Cicer arietinum L. HOM05D003877 ORTHO05D004647 3.5e-189 665.6 513 65.3
QL08p063706 Quercus lobata HOM05D003877 ORTHO05D004647 4.5e-189 665.2 517 64.8
Cpa.g.sc19.135 Carica papaya HOM05D003877 ORTHO05D004647 1.3e-188 663.7 507 64.1
Gohir.D04G070400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.7e-188 663.3 521 63.5
Lj6g0018000 Lotus japonicus HOM05D003877 ORTHO05D004647 5.0e-188 661.8 515 63.9
MD01G1157500 Malus domestica HOM05D003877 ORTHO05D004647 1.1e-187 660.6 524 63.4
Medtr3g071580 Medicago truncatula HOM05D003877 ORTHO05D004647 1.1e-187 660.6 499 66.1
Gorai.010G195300 Gossypium raimondii HOM05D003877 ORTHO05D004647 5.5e-187 658.3 521 61.8
TAR633G0464 Trochodendron aralioides HOM05D003877 ORTHO05D004647 7.2e-187 657.9 525 62.3
RcHm_v2.0_Chr1g0370931 Rosa chinensis HOM05D003877 ORTHO05D004647 1.6e-186 656.8 520 62.5
Gohir.A06G161800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 2.7e-186 656.0 521 61.6
Lalb_Chr08g0231521 Lupinus albus HOM05D003877 ORTHO05D004647 2.7e-186 656.0 507 63.7
TAR623G0028 Trochodendron aralioides HOM05D003877 ORTHO05D004647 3.6e-186 655.6 521 63.5
Haze_17269 Corylus avellana HOM05D003877 ORTHO05D004647 1.8e-185 653.3 494 65.4
GSVIVG01032757001 Vitis vinifera HOM05D003877 ORTHO05D004647 1.8e-185 653.3 517 63.6
Gohir.D06G167400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 2.3e-185 652.9 521 61.4
Prupe.2G255400 Prunus persica HOM05D003877 ORTHO05D004647 2.3e-185 652.9 520 64.2
Glyma.18G024700 Glycine max HOM05D003877 ORTHO05D004647 3.0e-185 652.5 518 62.5
FAN01G0819 Fragaria x ananassa HOM05D003877 ORTHO05D004647 8.8e-185 651.0 523 61.8
FAN10G2809 Fragaria x ananassa HOM05D003877 ORTHO05D004647 8.8e-185 651.0 523 61.8
CiPaw.02G195400 Carya illinoinensis HOM05D003877 ORTHO05D004647 1.1e-184 650.6 516 64.1
Peaxi162Scf00284g00528 Petunia axillaris HOM05D003877 ORTHO05D004647 3.3e-184 649.0 529 61.4
FvH4_7g25060 Fragaria vesca HOM05D003877 ORTHO05D004647 7.5e-184 647.9 523 61.6
Glyma.05G080100 Glycine max HOM05D003877 ORTHO05D004647 9.7e-184 647.5 515 62.7
PGSC0003DMG400030038 Solanum tuberosum HOM05D003877 ORTHO05D004647 1.7e-183 646.7 522 62.1
FAN06G1542 Fragaria x ananassa HOM05D003877 ORTHO05D004647 2.2e-183 646.4 523 61.2
FAN03G0426 Fragaria x ananassa HOM05D003877 ORTHO05D004647 3.7e-183 645.6 523 61.2
Solyc06g050990.3 Solanum lycopersicum HOM05D003877 ORTHO05D004647 4.8e-183 645.2 520 61.9
VMungo0540G0037 Vigna mungo HOM05D003877 ORTHO05D004647 4.8e-183 645.2 507 63.9
Nn7g35848 Nelumbo nucifera HOM05D003877 ORTHO05D004647 8.2e-183 644.4 522 62.5
Nitab4.5_0003391g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 1.8e-182 643.3 515 62.5
Gohir.A05G331800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 3.1e-182 642.5 522 62.6
Sopen06g016790 Solanum pennellii HOM05D003877 ORTHO05D004647 3.1e-182 642.5 520 61.7
Phvul.006G048800 Phaseolus vulgaris HOM05D003877 ORTHO05D004647 4.1e-182 642.1 528 62.1
CSS0042673 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.2e-181 640.6 524 61.8
arahy.Tifrunner.gnm1.ann1.EHZF9M Arachis hypogaea HOM05D003877 ORTHO05D004647 1.6e-181 640.2 515 61.4
Rhsim03G0146600 Rhododendron simsii HOM05D003877 ORTHO05D004647 2.0e-181 639.8 521 60.3
DCAR_011841 Daucus carota HOM05D003877 ORTHO05D004647 2.7e-181 639.4 511 61.4
vmacro17690 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 2.7e-181 639.4 537 59.8
Lalb_Chr23g0277091 Lupinus albus HOM05D003877 ORTHO05D004647 4.5e-181 638.6 496 64.5
Cc02_g06060 Coffea canephora HOM05D003877 ORTHO05D004647 1.0e-180 637.5 499 63.1
Actinidia29719 Actinidia chinensis HOM05D003877 ORTHO05D004647 6.5e-180 634.8 519 61.3
arahy.Tifrunner.gnm1.ann1.ZCM4RK Arachis hypogaea HOM05D003877 ORTHO05D004647 1.1e-179 634.0 520 60.8
CANSAT56G2949 Cannabis sativa HOM05D003877 ORTHO05D004647 1.5e-179 633.6 511 62.0
CSS0004354 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 3.2e-179 632.5 405 73.3
Sopen05g031010 Solanum pennellii HOM05D003877 ORTHO05D004647 5.5e-179 631.7 513 61.4
arahy.Tifrunner.gnm1.ann1.EJG72V Arachis hypogaea HOM05D003877 ORTHO05D004647 9.4e-179 630.9 505 62.0
Nitab4.5_0000789g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 3.6e-178 629.0 515 61.6
CAN.G1268.9 Capsicum annuum HOM05D003877 ORTHO05D004647 4.7e-178 628.6 517 60.2
Lj1C785G15 Lonicera japonica HOM05D003877 ORTHO05D004647 4.7e-178 628.6 513 60.0
Peaxi162Scf01149g00319 Petunia axillaris HOM05D003877 ORTHO05D004647 2.3e-177 626.3 485 62.7
Lsat_1_v5_gn_9_123441 Lactuca sativa HOM05D003877 ORTHO05D004647 3.0e-177 625.9 518 60.2
Eucgr.G03086 Eucalyptus grandis HOM05D003877 ORTHO05D004647 1.5e-176 623.6 518 59.5
Carub.0001s0925 Capsella rubella HOM05D003877 ORTHO05D004647 2.6e-176 622.9 516 58.1
Nitab4.5_0005049g0030 Nicotiana tabacum HOM05D003877 ORTHO05D004647 3.4e-176 622.5 549 58.3
Hund13891 Selenicereus undatus HOM05D003877 ORTHO05D004647 3.4e-176 622.5 546 58.6
Nitab4.5_0000058g0130 Nicotiana tabacum HOM05D003877 ORTHO05D004647 5.7e-176 621.7 541 58.8
PSO801G0566 Papaver somniferum HOM05D003877 ORTHO05D004647 5.7e-176 621.7 517 60.0
CSS0043221 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.3e-175 620.5 378 75.7
CSS0044757 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.3e-175 620.5 378 75.7
AT1G09870 Arabidopsis thaliana HOM05D003877 ORTHO05D004647 8.3e-175 617.8 517 57.6
Aqoxy2G01450 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 1.1e-174 617.5 522 58.8
Dinv21772 Davidia involucrata HOM05D003877 ORTHO05D004647 1.4e-174 617.1 480 64.6
Sp1g08500 Schrenkiella parvula HOM05D003877 ORTHO05D004647 3.1e-174 615.9 531 56.7
AL1G20470 Arabidopsis lyrata HOM05D003877 ORTHO05D004647 4.1e-174 615.5 517 57.6
Sed0008918 Sechium edule HOM05D003877 ORTHO05D004647 9.1e-174 614.4 526 59.1
SGA_v2.0_scaffold2G01375 Striga asiatica HOM05D003877 ORTHO05D004647 2.7e-173 612.8 516 60.5
Aqoxy1G01313 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 4.5e-173 612.1 513 58.9
ECA233G0637 Erigeron canadensis HOM05D003877 ORTHO05D004647 6.5e-172 608.2 518 60.4
Thhalv10007485m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 8.5e-172 607.8 517 56.5
THA.LOC104810121 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 8.5e-172 607.8 510 58.8
BraA09t41875Z Brassica rapa HOM05D003877 ORTHO05D004647 1.1e-171 607.4 514 57.4
Hund15887 Selenicereus undatus HOM05D003877 ORTHO05D004647 1.9e-171 606.7 533 57.0
MSTRG.8927 Avicennia marina HOM05D003877 ORTHO05D004647 2.5e-171 606.3 511 59.7
CARHR009900 Cardamine hirsuta HOM05D003877 ORTHO05D004647 3.2e-171 605.9 516 57.0
BcaC07g41857 Brassica carinata HOM05D003877 ORTHO05D004647 7.2e-171 604.7 514 57.6
C08p49240 Brassica napus HOM05D003877 ORTHO05D004647 7.2e-171 604.7 514 57.6
BolC8t52459H Brassica oleracea HOM05D003877 ORTHO05D004647 7.2e-171 604.7 514 57.6
BraA06t23872Z Brassica rapa HOM05D003877 ORTHO05D004647 7.2e-171 604.7 520 56.7
Migut.F00639 Erythranthe guttata HOM05D003877 ORTHO05D004647 7.2e-171 604.7 523 59.7
Sc11g0005270 Simmondsia chinensis HOM05D003877 ORTHO05D004647 7.2e-171 604.7 524 58.0
A09p65300 Brassica napus HOM05D003877 ORTHO05D004647 9.4e-171 604.4 514 57.2
THA.LOC104824338 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 9.4e-171 604.4 518 57.1
vmacro10004 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 3.6e-170 602.4 613 52.0
HanXRQChr08g0221971 Helianthus annuus HOM05D003877 ORTHO05D004647 1.0e-169 600.9 513 59.8
A06p06580 Brassica napus HOM05D003877 ORTHO05D004647 4.4e-168 595.5 520 56.0
BolC5t29551H Brassica oleracea HOM05D003877 ORTHO05D004647 4.4e-168 595.5 531 55.4
MELO3C018375.2 Cucumis melo HOM05D003877 ORTHO05D004647 4.4e-168 595.5 517 58.2
SGA_v2.0_scaffold85G26692 Striga asiatica HOM05D003877 ORTHO05D004647 7.5e-168 594.7 562 55.7
Ah.10g036260 Amaranthus hybridus HOM05D003877 ORTHO05D004647 1.3e-167 594.0 545 57.1
EL10Ac2g04887 Beta vulgaris HOM05D003877 ORTHO05D004647 2.2e-167 593.2 518 58.1
vmacro17691 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 3.7e-167 592.4 540 57.4
BcaC05g24837 Brassica carinata HOM05D003877 ORTHO05D004647 6.3e-167 591.7 513 56.3
AUR62022935 Chenopodium quinoa HOM05D003877 ORTHO05D004647 8.3e-167 591.3 518 57.5
C05p07990 Brassica napus HOM05D003877 ORTHO05D004647 1.4e-166 590.5 531 55.0
Aa31LG1G5020 Aethionema arabicum HOM05D003877 ORTHO05D004647 7.0e-166 588.2 518 56.4
Oeu056656.1 Olea europaea HOM05D003877 ORTHO05D004647 7.0e-166 588.2 517 57.4
CsaV3_5G010390 Cucumis sativus L. HOM05D003877 ORTHO05D004647 9.2e-166 587.8 504 58.7
SGA_v2.0_scaffold60G20966 Striga asiatica HOM05D003877 ORTHO05D004647 3.5e-165 585.9 549 55.7
Thhalv10002208m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 1.3e-164 583.9 407 65.4
ClCG07G004500 Citrullus lanatus HOM05D003877 ORTHO05D004647 2.3e-164 583.2 404 68.1
Psat5g130920 Pisum sativum HOM05D003877 ORTHO05D004647 2.3e-164 583.2 500 60.8
PSO339G0345 Papaver somniferum HOM05D003877 ORTHO05D004647 2.9e-164 582.8 536 55.8
AUR62012296 Chenopodium quinoa HOM05D003877 ORTHO05D004647 1.2e-162 577.4 517 57.1
Sed0009338 Sechium edule HOM05D003877 ORTHO05D004647 6.1e-162 575.1 523 56.8
PSO349G0168 Papaver somniferum HOM05D003877 ORTHO05D004647 1.4e-161 573.9 497 57.7
CDE04G1002 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 8.9e-161 571.2 526 55.5
PGSC0003DMG400027120 Solanum tuberosum HOM05D003877 ORTHO05D004647 9.8e-160 567.8 475 60.6
Os03g0818100 Oryza sativa ssp. japonica HOM05D003877 ORTHO05D004647 1.3e-159 567.4 434 62.9
Prupe.6G130900 Prunus persica HOM05D003877 ORTHO05D004647 4.6e-157 558.9 520 58.7
Zm00001eb062330 Zea mays HOM05D003877 ORTHO05D004647 1.1e-155 554.3 560 51.8
Atru.chr12.96 Acer truncatum HOM05D003877 ORTHO05D004647 9.5e-155 551.2 424 65.1
SalBow3G1521 Salvia bowleyana HOM05D003877 ORTHO05D004647 4.7e-154 548.9 657 47.0
ATR0068G102 Amborella trichopoda HOM05D003877 ORTHO05D004647 8.0e-154 548.1 531 53.9
Lsat_1_v5_gn_9_60880 Lactuca sativa HOM05D003877 ORTHO05D004647 3.1e-153 546.2 496 55.0
MELO3C034227.2 Cucumis melo HOM05D003877 ORTHO05D004647 8.6e-148 528.1 520 52.9
CsaV3_5G010430 Cucumis sativus L. HOM05D003877 ORTHO05D004647 9.5e-147 524.6 524 53.8
ATR0681G014 Amborella trichopoda HOM05D003877 ORTHO05D004647 4.0e-145 519.2 496 56.9
CSS0003433 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 4.7e-138 495.7 361 65.4
CsaV3_5G010400 Cucumis sativus L. HOM05D003877 ORTHO05D004647 3.9e-132 476.1 517 49.5
unitig_16.g32857 Utricularia gibba HOM05D003877 ORTHO05D004647 1.9e-131 473.8 574 45.6
CDE06G2086 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 2.3e-124 450.3 504 48.4
Pp3c8_15050 Physcomitrium patens HOM05D003877 ORTHO05D004647 1.3e-122 444.5 398 53.8
Mapoly0029s0098 Marchantia polymorpha HOM05D003877 ORTHO05D004647 2.8e-122 443.4 531 44.6
Pp3c24_6790 Physcomitrium patens HOM05D003877 ORTHO05D004647 2.0e-120 437.2 519 44.1
Solyc05g052480.4 Solanum lycopersicum HOM05D003877 ORTHO05D004647 4.6e-117 426.0 388 57.7
SMO271G0017 Selaginella moellendorffii HOM05D003877 ORTHO05D004647 1.3e-116 424.5 515 45.2
HPP92_019712 Vanilla planifolia HOM05D003877 ORTHO05D004647 2.5e-115 420.2 311 67.5
AagrBONN_evm.TU.Sc2ySwM_344.2788 Anthoceros agrestis HOM05D003877 ORTHO05D004647 1.3e-103 381.3 572 39.7
unitig_8.g4098 Utricularia gibba HOM05D003877 ORTHO05D004647 1.6e-85 321.2 341 49.3
SalBow3G0419 Salvia bowleyana HOM05D003877 ORTHO05D004647 6.1e-85 319.3 318 54.1
SalBow3G3178 Salvia bowleyana HOM05D003877 ORTHO05D004647 4.2e-78 296.6 181 74.6
CsaV3_2G012250 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.5e-70 271.6 193 69.4
SEGI_29662 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 1.3e-47 195.3 159 59.7
SGA_v2.0_scaffold85G26702 Striga asiatica HOM05D003877 ORTHO05D004647 3.7e-42 177.2 116 70.7
Manes.09G077219 Manihot esculenta HOM05D003877 ORTHO05D004647 2.4e-41 174.5 101 82.2
TPR.G10202 Trifolium pratense HOM05D003877 ORTHO05D004647 4.6e-40 170.2 106 71.7
CBR_g38028 Chara braunii HOM05D003877 ORTHO05D004647 5.8e-35 153.3 212 38.2
TAR626G1532 Trochodendron aralioides HOM05D003877 ORTHO05D004647 2.9e-34 151.0 149 54.4
Manes.18G042850 Manihot esculenta HOM05D003877 ORTHO05D004647 4.6e-32 143.7 112 67.9
Manes.06G044901 Manihot esculenta HOM05D003877 ORTHO05D004647 7.8e-32 142.9 112 67.9
Cre13.g568600 Chlamydomonas reinhardtii HOM05D003877 ORTHO05D004647 1.9e-30 138.3 428 28.3
Lsat_1_v5_gn_5_175980 Lactuca sativa HOM05D003877 ORTHO05D004647 3.3e-30 137.5 109 62.4
SEGI_27537 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 5.2e-28 130.2 81 72.8
CsaV3_2G012240 Cucumis sativus L. HOM05D003877 ORTHO05D004647 9.2e-25 119.4 83 63.9
unitig_8.g4097 Utricularia gibba HOM05D003877 ORTHO05D004647 7.8e-24 116.3 100 54.0
TPR.G5082 Trifolium pratense HOM05D003877 ORTHO05D004647 3.9e-23 114.0 67 73.1
Nn5g28638 Nelumbo nucifera HOM05D003877 ORTHO05D004647 7.3e-22 109.8 70 71.4
CSS0015783 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.8e-20 105.1 115 54.8
Nn7g36267 Nelumbo nucifera HOM05D003877 ORTHO05D004647 3.8e-18 97.4 61 72.1
Carub.0003s0920 Capsella rubella HOM05D000468 ORTHO05D114682 3.2e-17 94.4 67 70.1
Manes.15G188901 Manihot esculenta HOM05D003877 ORTHO05D004647 6.9e-12 76.6 48 72.9
MELO3C018376.2 Cucumis melo HOM05D003877 ORTHO05D004647 5.8e-11 73.6 45 71.1
MELO3C033083.2 Cucumis melo HOM05D003877 ORTHO05D034944 7.8e-08 63.2 39 71.8
Lsat_1_v5_gn_6_23680 Lactuca sativa HOM05D001176 ORTHO05D014361 3.9e-07 60.8 57 54.4
SEGI_18884 Sequoiadendron giganteum HOM05D003877 ORTHO05D038325 1.5e-06 58.9 35 57.1


User provided reference genes

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