Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0048400 Salix brachista HOM05D003903 ORTHO05D004828 4.4e-275 950.7 480 100.0
Potri.008G066000 Populus trichocarpa HOM05D003903 ORTHO05D004828 3.3e-254 881.3 480 92.1
Potri.010G191300 Populus trichocarpa HOM05D003903 ORTHO05D004828 6.0e-240 833.9 480 86.9
Sabra10G0147300 Salix brachista HOM05D003903 ORTHO05D004828 1.7e-234 815.8 480 83.8
Manes.07G126900 Manihot esculenta HOM05D003903 ORTHO05D004828 4.5e-211 738.0 478 75.7
Manes.10G016200 Manihot esculenta HOM05D003903 ORTHO05D004828 7.0e-204 714.1 479 73.9
COL.COLO4_25636 Corchorus olitorius HOM05D003903 ORTHO05D004828 9.1e-196 687.2 478 71.5
CANSAT56G3936 Cannabis sativa HOM05D003903 ORTHO05D004828 1.7e-194 682.9 484 70.7
Cfa001353 Carpinus fangiana HOM05D003903 ORTHO05D004828 2.9e-194 682.2 466 73.0
Prupe.2G247600 Prunus persica HOM05D003903 ORTHO05D004828 5.0e-194 681.4 485 69.7
Haze_17196 Corylus avellana HOM05D003903 ORTHO05D004828 1.9e-193 679.5 466 72.7
TWI53G1511 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 5.5e-193 677.9 467 70.7
Duzib114G0607 Durio zibethinus HOM05D003903 ORTHO05D004828 1.2e-192 676.8 467 71.1
RcHm_v2.0_Chr1g0369681 Rosa chinensis HOM05D003903 ORTHO05D004828 6.1e-192 674.5 482 70.3
Duzib128G1594 Durio zibethinus HOM05D003903 ORTHO05D004828 8.0e-192 674.1 478 70.5
Cpa.g.sc19.206 Carica papaya HOM05D003903 ORTHO05D004828 1.8e-191 672.9 478 70.3
Thecc.10G023200 Theobroma cacao HOM05D003903 ORTHO05D004828 2.3e-191 672.5 477 70.0
Gorai.009G322100 Gossypium raimondii HOM05D003903 ORTHO05D004828 2.6e-190 669.1 467 71.3
Gohir.D05G302900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 3.4e-190 668.7 467 71.3
MD07G1215700 Malus domestica HOM05D003903 ORTHO05D004828 9.8e-190 667.2 490 68.8
CiPaw.02G190900 Carya illinoinensis HOM05D003903 ORTHO05D004828 4.8e-189 664.8 467 69.6
Gohir.A05G303900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.4e-188 663.3 467 70.9
Gorai.011G283600 Gossypium raimondii HOM05D003903 ORTHO05D004828 4.1e-188 661.8 467 70.9
FAN01G2475 Fragaria x ananassa HOM05D003903 ORTHO05D004828 5.4e-188 661.4 481 68.4
TWI73G0235 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 7.0e-188 661.0 464 69.8
Gohir.A10G233600 Gossypium hirsutum HOM05D003903 ORTHO05D004828 3.5e-187 658.7 478 69.9
Gohir.D10G245900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.0e-186 657.1 467 70.4
FAN10G1202 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.3e-186 656.8 480 68.1
FvH4_7g24150 Fragaria vesca HOM05D003903 ORTHO05D004828 2.9e-186 655.6 480 67.5
MD01G1148800 Malus domestica HOM05D003903 ORTHO05D004828 2.5e-185 652.5 484 67.4
Gohir.A13G016200 Gossypium hirsutum HOM05D003903 ORTHO05D004828 7.2e-185 651.0 474 68.4
Gorai.013G019200 Gossypium raimondii HOM05D003903 ORTHO05D004828 6.1e-184 647.9 467 69.0
FAN03G2393 Fragaria x ananassa HOM05D003903 ORTHO05D004828 8.0e-184 647.5 472 68.9
ClCG11G006280 Citrullus lanatus HOM05D003903 ORTHO05D004828 4.0e-183 645.2 483 66.7
CiPaw.01G296700 Carya illinoinensis HOM05D003903 ORTHO05D004828 5.2e-183 644.8 465 67.5
Gohir.D13G017300 Gossypium hirsutum HOM05D003903 ORTHO05D004828 8.9e-183 644.0 467 68.5
Ciclev10031447m.g Citrus clementina HOM05D003903 ORTHO05D004828 1.4e-180 636.7 471 69.4
FAN06G4939 Fragaria x ananassa HOM05D003903 ORTHO05D004828 4.1e-180 635.2 471 67.1
Aqoxy4G02628 Aquilegia oxysepala HOM05D003903 ORTHO05D004828 9.2e-180 634.0 470 65.7
CsaV3_6G001690 Cucumis sativus L. HOM05D003903 ORTHO05D004828 7.8e-179 630.9 487 64.5
Nitab4.5_0001346g0020 Nicotiana tabacum HOM05D003903 ORTHO05D004828 1.2e-176 623.6 469 65.7
TAR633G2671 Trochodendron aralioides HOM05D003903 ORTHO05D004828 2.8e-176 622.5 484 65.9
Sed0011279 Sechium edule HOM05D003903 ORTHO05D004828 3.6e-176 622.1 483 64.8
Nitab4.5_0000802g0150 Nicotiana tabacum HOM05D003903 ORTHO05D004828 1.8e-175 619.8 470 65.1
Atru.chr12.4 Acer truncatum HOM05D003903 ORTHO05D004828 5.2e-175 618.2 454 68.9
Hma1.2p1_1409F.1_g281590 Hydrangea macrophylla HOM05D003903 ORTHO05D004828 5.2e-175 618.2 491 63.7
Cc02_g06790 Coffea canephora HOM05D003903 ORTHO05D004828 1.2e-174 617.1 471 63.9
Sed0004569 Sechium edule HOM05D003903 ORTHO05D004828 3.7e-173 612.1 482 63.9
Rhsim03G0141400 Rhododendron simsii HOM05D003903 ORTHO05D004828 1.1e-172 610.5 474 63.9
Actinidia29686 Actinidia chinensis HOM05D003903 ORTHO05D004828 1.4e-172 610.1 465 66.0
Peaxi162Scf01313g00013 Petunia axillaris HOM05D003903 ORTHO05D004828 1.2e-171 607.1 469 64.6
Lj8C71T1 Lonicera japonica HOM05D003903 ORTHO05D004828 1.1e-169 600.5 461 65.7
Sc10g0002230 Simmondsia chinensis HOM05D003903 ORTHO05D004828 1.9e-169 599.7 483 62.3
Eucgr.J00236 Eucalyptus grandis HOM05D003903 ORTHO05D004828 1.2e-168 597.0 479 64.7
Nn2g11424 Nelumbo nucifera HOM05D003903 ORTHO05D004828 4.7e-168 595.1 481 62.2
PSO339G1420 Papaver somniferum HOM05D003903 ORTHO05D004828 6.8e-167 591.3 474 64.3
GSVIVG01032858001 Vitis vinifera HOM05D003903 ORTHO05D004828 5.8e-166 588.2 474 62.9
MELO3C008286.2 Cucumis melo HOM05D003903 ORTHO05D004828 5.4e-164 581.6 488 61.5
Lj1P952T30 Lonicera japonica HOM05D003903 ORTHO05D004828 3.5e-163 578.9 469 62.7
Lsat_1_v5_gn_2_121400 Lactuca sativa HOM05D003903 ORTHO05D004828 1.3e-162 577.0 474 62.0
MSTRG.8967 Avicennia marina HOM05D003903 ORTHO05D004828 1.7e-162 576.6 481 58.4
DCAR_011797 Daucus carota HOM05D003903 ORTHO05D004828 5.6e-161 571.6 465 61.7
Migut.F00698 Erythranthe guttata HOM05D003903 ORTHO05D004828 3.4e-158 562.4 467 58.9
MBI14_g09425_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 4.4e-158 562.0 482 60.2
MBI05_g14236_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.4e-156 557.0 484 59.3
Ah.10g036480 Amaranthus hybridus HOM05D003903 ORTHO05D004828 1.9e-156 556.6 475 58.9
Glyma.11G228100 Glycine max HOM05D003903 ORTHO05D004828 2.4e-156 556.2 473 60.9
HanXRQChr07g0202521 Helianthus annuus HOM05D003903 ORTHO05D004828 5.4e-156 555.1 469 61.2
MSTRG.27342 Avicennia marina HOM05D003903 ORTHO05D004828 7.8e-155 551.2 468 57.5
Glyma.18G029300 Glycine max HOM05D003903 ORTHO05D004828 1.0e-154 550.8 473 60.9
Ca_17155_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 9.6e-153 544.3 474 58.9
AUR62022857 Chenopodium quinoa HOM05D003903 ORTHO05D004828 2.1e-152 543.1 472 58.3
Ah.16g103300 Amaranthus hybridus HOM05D003903 ORTHO05D004828 2.8e-152 542.7 459 58.8
AUR62012225 Chenopodium quinoa HOM05D003903 ORTHO05D004828 3.1e-151 539.3 459 59.3
Medtr3g070230 Medicago truncatula HOM05D003903 ORTHO05D004828 5.8e-150 535.0 474 58.4
CDE07G0538 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 2.9e-149 532.7 470 56.6
Psat5g126680 Pisum sativum HOM05D003903 ORTHO05D004828 2.9e-149 532.7 484 56.2
Lj6g0001525 Lotus japonicus HOM05D003903 ORTHO05D004828 4.9e-149 531.9 470 57.2
VMungo1383G2047 Vigna mungo HOM05D003903 ORTHO05D004828 4.9e-149 531.9 469 58.2
ECA238G2090 Erigeron canadensis HOM05D003903 ORTHO05D004828 8.4e-149 531.2 458 58.7
CDE04G0060 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.2e-147 527.3 469 58.0
Phvul.001G241300 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 1.2e-147 527.3 469 58.6
PGR142G4408 Punica granatum HOM05D003903 ORTHO05D004828 1.2e-147 527.3 473 59.4
SGA_v2.0_scaffold60G21023 Striga asiatica HOM05D003903 ORTHO05D004828 1.2e-147 527.3 467 55.5
EL10Ac2g04804 Beta vulgaris HOM05D003903 ORTHO05D004828 1.3e-146 523.9 467 56.5
PGR044G2033 Punica granatum HOM05D003903 ORTHO05D004828 4.8e-144 515.4 477 56.6
AT2G40000 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 2.4e-143 513.1 467 56.5
CDE03G0196 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 2.4e-143 513.1 467 56.7
Aa31LG5G19600 Aethionema arabicum HOM05D003903 ORTHO05D004828 5.3e-143 511.9 466 55.6
AL4G37600 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 9.9e-142 507.7 467 55.5
Sp4g22310 Schrenkiella parvula HOM05D003903 ORTHO05D004828 9.9e-142 507.7 467 55.9
CARHR134950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 1.9e-140 503.4 468 56.4
Thhalv10017972m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 3.2e-140 502.7 468 54.5
THA.LOC104810079 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 4.6e-139 498.8 467 55.5
THA.LOC104824309 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 2.3e-138 496.5 466 56.0
Carub.0004s2214 Capsella rubella HOM05D003903 ORTHO05D004828 6.6e-138 495.0 467 54.4
CDE04G2684 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 6.6e-138 495.0 405 59.3
BcaB01g03584 Brassica carinata HOM05D003903 ORTHO05D004828 8.7e-138 494.6 467 56.3
BolC3t15044H Brassica oleracea HOM05D003903 ORTHO05D004828 8.7e-138 494.6 468 55.6
BcaC01g05448 Brassica carinata HOM05D003903 ORTHO05D004828 1.5e-137 493.8 467 55.2
BraA03t11470Z Brassica rapa HOM05D003903 ORTHO05D004828 1.9e-137 493.4 467 55.7
Lalb_Chr10g0105071 Lupinus albus HOM05D003903 ORTHO05D004828 1.9e-137 493.4 469 54.2
A03p22420 Brassica napus HOM05D003903 ORTHO05D004828 7.3e-137 491.5 467 55.0
C03p26580 Brassica napus HOM05D003903 ORTHO05D004828 8.1e-136 488.0 467 54.6
arahy.Tifrunner.gnm1.ann1.66PPWS Arachis hypogaea HOM05D003903 ORTHO05D004828 2.6e-134 483.0 474 52.3
CARHR165950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 2.6e-134 483.0 466 54.9
ATR0618G085 Amborella trichopoda HOM05D003903 ORTHO05D004828 9.9e-134 481.1 475 51.4
BolC4t28276H Brassica oleracea HOM05D003903 ORTHO05D004828 1.3e-133 480.7 468 53.0
C04p67730 Brassica napus HOM05D003903 ORTHO05D004828 3.2e-132 476.1 468 52.4
AL5G37130 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 4.2e-132 475.7 466 53.6
A04p30140 Brassica napus HOM05D003903 ORTHO05D004828 5.4e-132 475.3 468 52.6
Glyma.14G061200 Glycine max HOM05D003903 ORTHO05D004828 7.1e-132 474.9 473 52.6
BraA04t18495Z Brassica rapa HOM05D003903 ORTHO05D004828 1.2e-131 474.2 468 52.6
AT3G55840 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 4.6e-131 472.2 466 53.6
unitig_37.g12017 Utricularia gibba HOM05D003903 ORTHO05D004828 4.6e-131 472.2 398 57.8
BcaC02g07344 Brassica carinata HOM05D003903 ORTHO05D004828 1.8e-130 470.3 468 52.1
BcaC02g07389 Brassica carinata HOM05D003903 ORTHO05D004828 1.8e-130 470.3 468 52.1
Psat2g033760 Pisum sativum HOM05D003903 ORTHO05D004828 2.3e-130 469.9 469 50.7
LjContig00357g0017260 Lotus japonicus HOM05D003903 ORTHO05D004828 8.7e-130 468.0 476 50.2
BcaB02g09061 Brassica carinata HOM05D003903 ORTHO05D004828 1.5e-129 467.2 470 52.6
Sp5g06640 Schrenkiella parvula HOM05D003903 ORTHO05D004828 1.5e-129 467.2 472 52.3
Phvul.008G225500 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 4.3e-129 465.7 467 50.3
VMungo0647G1175 Vigna mungo HOM05D003903 ORTHO05D004828 4.3e-129 465.7 465 50.8
Carub.0005s2262 Capsella rubella HOM05D003903 ORTHO05D004828 5.6e-129 465.3 446 53.4
Medtr5g082150 Medicago truncatula HOM05D003903 ORTHO05D004828 2.8e-128 463.0 475 49.7
Thhalv10010400m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 4.8e-128 462.2 467 52.7
A09p48830 Brassica napus HOM05D003903 ORTHO05D004828 1.4e-127 460.7 467 52.7
BraA09t40336Z Brassica rapa HOM05D003903 ORTHO05D004828 1.4e-127 460.7 467 52.7
BolC8t50737H Brassica oleracea HOM05D003903 ORTHO05D004828 2.4e-127 459.9 467 52.7
Glyma.02G255400 Glycine max HOM05D003903 ORTHO05D004828 9.0e-127 458.0 464 52.6
Lalb_Chr15g0084211 Lupinus albus HOM05D003903 ORTHO05D004828 9.0e-127 458.0 469 52.0
Lalb_Chr18g0052671 Lupinus albus HOM05D003903 ORTHO05D004828 1.5e-126 457.2 472 51.7
C04p07470 Brassica napus HOM05D003903 ORTHO05D004828 2.0e-126 456.8 468 52.1
C08p31160 Brassica napus HOM05D003903 ORTHO05D004828 2.0e-126 456.8 467 52.5
BolC4t22366H Brassica oleracea HOM05D003903 ORTHO05D004828 2.0e-126 456.8 468 52.1
Dinv20976 Davidia involucrata HOM05D003903 ORTHO05D004828 7.6e-126 454.9 324 69.1
Dinv21029 Davidia involucrata HOM05D003903 ORTHO05D004828 7.6e-126 454.9 324 69.1
Ca_05946_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 4.9e-125 452.2 461 50.5
A05p06420 Brassica napus HOM05D003903 ORTHO05D004828 2.5e-124 449.9 468 51.5
BraA05t19610Z Brassica rapa HOM05D003903 ORTHO05D004828 7.1e-124 448.4 468 51.3
BcaC02g07343 Brassica carinata HOM05D003903 ORTHO05D004828 3.3e-121 439.5 470 51.3
Os01g0855600 Oryza sativa ssp. japonica HOM05D003903 ORTHO05D004828 2.1e-120 436.8 448 51.3
HPP92_019430 Vanilla planifolia HOM05D003903 ORTHO05D004828 1.5e-118 430.6 445 51.9
Zm00001eb147510 Zea mays HOM05D003903 ORTHO05D004828 1.5e-118 430.6 442 51.4
Zm00001eb367110 Zea mays HOM05D003903 ORTHO05D004828 2.7e-115 419.9 457 49.7
SEGI_25890 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 9.0e-111 404.8 449 47.2
SEGI_13375 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 1.1e-108 397.9 453 45.7
Pp3c7_23390 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.0e-98 364.8 504 40.9
Pp3c1_9290 Physcomitrium patens HOM05D003903 ORTHO05D004828 3.3e-97 359.8 450 42.7
Pp3c2_27180 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.7e-96 357.5 460 41.7
BcaB01g00057 Brassica carinata HOM05D003903 ORTHO05D004828 3.7e-96 356.3 467 45.2
Pp3c11_5520 Physcomitrium patens HOM05D003903 ORTHO05D004828 6.3e-96 355.5 497 40.8
Pp3c10_11250 Physcomitrium patens HOM05D003903 ORTHO05D004828 5.5e-92 342.4 445 40.4
Eucgr.G03040 Eucalyptus grandis HOM05D003903 ORTHO05D004828 7.2e-84 315.5 337 53.1
BcaB06g29121 Brassica carinata HOM05D003903 ORTHO05D004828 4.4e-81 306.2 353 48.4
Dinv34412 Davidia involucrata HOM05D003903 ORTHO05D004828 4.7e-75 286.2 205 69.8
Pp3c1_34950 Physcomitrium patens HOM05D003903 ORTHO05D004828 3.7e-72 276.6 368 39.4
MBI09_g39159_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 2.7e-62 243.8 209 56.9
C04p07450 Brassica napus HOM05D003903 ORTHO05D004828 1.1e-60 238.4 203 56.7
BolC4t22365H Brassica oleracea HOM05D003903 ORTHO05D004828 1.5e-60 238.0 203 56.7
MBI15_g28805_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 9.5e-52 208.8 163 59.5
TPR.G2520 Trifolium pratense HOM05D003903 ORTHO05D004828 9.5e-52 208.8 220 50.5
BcaNung05460 Brassica carinata HOM05D003903 ORTHO05D004828 2.1e-46 191.0 164 59.8
Nn5g26808 Nelumbo nucifera HOM05D003903 ORTHO05D004828 5.8e-41 172.9 325 36.0
arahy.Tifrunner.gnm1.ann1.I5QRDP Arachis hypogaea HOM05D003903 ORTHO05D004828 3.8e-32 143.7 137 51.1
BcaNung05461 Brassica carinata HOM05D003903 ORTHO05D004828 6.0e-30 136.3 293 37.2
BcaC09g52232 Brassica carinata HOM05D003903 ORTHO05D031840 4.8e-19 100.1 92 54.3
C08p31450 Brassica napus HOM05D003903 ORTHO05D031840 1.7e-16 91.7 88 52.3
BolC7t41876H Brassica oleracea HOM05D003903 ORTHO05D031840 1.9e-15 88.2 90 52.2
VMungo0540G2232 Vigna mungo HOM05D003903 ORTHO05D004828 1.2e-14 85.5 170 35.3
ATR0693G017 Amborella trichopoda HOM05D003903 ORTHO05D004828 3.3e-12 77.4 106 36.8
BcaC02g07346 Brassica carinata HOM05D003903 ORTHO05D095566 2.5e-07 61.2 65 53.8
BcaC02g07345 Brassica carinata HOM05D003903 ORTHO05D091390 3.2e-07 60.8 91 36.3
C05p20030 Brassica napus HOM05D003903 ORTHO05D004828 7.1e-07 59.7 38 65.8
MBI02_g23015_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.6e-06 58.5 67 43.3


User provided reference genes

Program Settings