Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0046500 Salix brachista HOM05D004764 ORTHO05D005580 7.3e-136 487.3 254 100.0
Sabra10G0149400 Salix brachista HOM05D004764 ORTHO05D005580 2.1e-58 229.9 346 46.8
Potri.010G194300 Populus trichocarpa HOM05D004764 ORTHO05D005580 2.0e-48 196.8 246 50.8
TWI73G0601 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 9.2e-46 188.0 244 48.8
Cpa.g.sc19.234 Carica papaya HOM05D004764 ORTHO05D005580 3.9e-44 182.6 244 48.0
QL07p043722 Quercus lobata HOM05D004764 ORTHO05D005580 3.9e-44 182.6 244 46.7
Prupe.2G152400 Prunus persica HOM05D004764 ORTHO05D005580 1.1e-43 181.0 244 47.1
Manes.10G019100 Manihot esculenta HOM05D004764 ORTHO05D005580 5.6e-43 178.7 244 47.5
TWI09G1390 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 7.3e-43 178.3 244 46.7
MD02G1196300 Malus domestica HOM05D004764 ORTHO05D005580 2.1e-42 176.8 244 46.3
Ciclev10032191m.g Citrus clementina HOM05D004764 ORTHO05D005580 3.6e-42 176.0 244 46.7
Ciclev10016032m.g Citrus clementina HOM05D004764 ORTHO05D005580 1.1e-41 174.5 244 46.7
MD07G1124900 Malus domestica HOM05D004764 ORTHO05D005580 1.4e-41 174.1 244 45.5
Cfa017589 Carpinus fangiana HOM05D004764 ORTHO05D005580 3.1e-41 172.9 244 46.3
Haze_20561 Corylus avellana HOM05D004764 ORTHO05D005580 3.1e-41 172.9 238 47.1
CSS0016003 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 4.0e-41 172.6 252 43.7
CSS0010099 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 5.2e-41 172.2 252 43.7
Hund16007 Selenicereus undatus HOM05D004764 ORTHO05D005580 8.9e-41 171.4 244 44.3
Thecc.10G137500 Theobroma cacao HOM05D004764 ORTHO05D005580 3.4e-40 169.5 244 45.5
TAR369G1012 Trochodendron aralioides HOM05D004764 ORTHO05D005580 3.4e-40 169.5 244 44.3
GSVIVG01016388001 Vitis vinifera HOM05D004764 ORTHO05D005580 3.4e-40 169.5 244 44.3
TAR623G1788 Trochodendron aralioides HOM05D004764 ORTHO05D005580 5.8e-40 168.7 244 44.3
Gorai.011G278800 Gossypium raimondii HOM05D004764 ORTHO05D005580 1.3e-39 167.5 244 45.1
Atru.chr12.285 Acer truncatum HOM05D004764 ORTHO05D005580 1.7e-39 167.2 244 44.7
COL.COLO4_25609 Corchorus olitorius HOM05D004764 ORTHO05D005580 1.7e-39 167.2 244 45.5
Duzib106G0320 Durio zibethinus HOM05D004764 ORTHO05D005580 1.7e-39 167.2 244 45.1
Rhsim09G0171300 Rhododendron simsii HOM05D004764 ORTHO05D005580 1.7e-39 167.2 262 42.4
Atru.chr12.324 Acer truncatum HOM05D004764 ORTHO05D005580 2.2e-39 166.8 244 44.3
FvH4_7g12790 Fragaria vesca HOM05D004764 ORTHO05D005580 2.2e-39 166.8 244 44.3
THA.LOC104816565 Tarenaya hassleriana HOM05D004764 ORTHO05D005580 2.2e-39 166.8 244 43.9
vmacro01597 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 2.2e-39 166.8 252 42.5
arahy.Tifrunner.gnm1.ann1.V0Z2W7 Arachis hypogaea HOM05D004764 ORTHO05D005580 2.9e-39 166.4 230 45.2
Sed0006926 Sechium edule HOM05D004764 ORTHO05D005580 2.9e-39 166.4 245 43.7
RcHm_v2.0_Chr1g0351821 Rosa chinensis HOM05D004764 ORTHO05D005580 3.7e-39 166.0 244 44.3
FAN10G3109 Fragaria x ananassa HOM05D004764 ORTHO05D005580 8.3e-39 164.9 244 44.3
Gohir.A10G228400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 8.3e-39 164.9 244 44.7
CANSAT21G1253 Cannabis sativa HOM05D004764 ORTHO05D005580 1.1e-38 164.5 244 43.9
HanXRQChr12g0369401 Helianthus annuus HOM05D004764 ORTHO05D005580 1.1e-38 164.5 250 42.0
Medtr6g084580 Medicago truncatula HOM05D004764 ORTHO05D005580 1.4e-38 164.1 244 43.0
Lsat_1_v5_gn_8_14200 Lactuca sativa HOM05D004764 ORTHO05D005580 1.9e-38 163.7 243 43.6
arahy.Tifrunner.gnm1.ann1.BR1H5V Arachis hypogaea HOM05D004764 ORTHO05D005580 3.2e-38 162.9 238 43.3
PGR142G0534 Punica granatum HOM05D004764 ORTHO05D005580 3.2e-38 162.9 245 43.7
BcaB07g33630 Brassica carinata HOM05D004764 ORTHO05D005580 4.1e-38 162.5 249 43.0
Lj1g0004796 Lotus japonicus HOM05D004764 ORTHO05D005580 4.1e-38 162.5 241 44.0
Sp1g38390 Schrenkiella parvula HOM05D004764 ORTHO05D005580 4.1e-38 162.5 244 42.2
Dinv20933 Davidia involucrata HOM05D004764 ORTHO05D005580 5.4e-38 162.2 251 43.0
Dinv21011 Davidia involucrata HOM05D004764 ORTHO05D005580 5.4e-38 162.2 251 43.0
Lj2g0017902 Lotus japonicus HOM05D004764 ORTHO05D005580 5.4e-38 162.2 244 43.4
MELO3C008270.2 Cucumis melo HOM05D004764 ORTHO05D005580 7.1e-38 161.8 244 43.9
Psat1g037840 Pisum sativum HOM05D004764 ORTHO05D005580 7.1e-38 161.8 244 42.6
VMungo0464G2049 Vigna mungo HOM05D004764 ORTHO05D005580 7.1e-38 161.8 244 43.4
BolC6t35797H Brassica oleracea HOM05D004764 ORTHO05D005580 9.2e-38 161.4 245 42.9
FAN10G1216 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.2e-37 161.0 244 43.4
Ca_25497_v3 Cicer arietinum L. HOM05D004764 ORTHO05D005580 1.6e-37 160.6 244 42.6
CsaV3_6G001590 Cucumis sativus L. HOM05D004764 ORTHO05D005580 1.6e-37 160.6 245 43.3
DCAR_011775 Daucus carota HOM05D004764 ORTHO05D005580 1.6e-37 160.6 252 41.3
CiPaw.10G131000 Carya illinoinensis HOM05D004764 ORTHO05D005580 2.1e-37 160.2 244 43.0
MSTRG.8305 Avicennia marina HOM05D004764 ORTHO05D005580 2.7e-37 159.8 252 41.7
C06p07040 Brassica napus HOM05D004764 ORTHO05D005580 2.7e-37 159.8 245 42.4
Cc02_g20660 Coffea canephora HOM05D004764 ORTHO05D005580 2.7e-37 159.8 252 41.3
Aa31LG10G3070 Aethionema arabicum HOM05D004764 ORTHO05D005580 3.5e-37 159.5 244 42.6
BcaC08g43344 Brassica carinata HOM05D004764 ORTHO05D005580 3.5e-37 159.5 245 42.0
BraA06t23434Z Brassica rapa HOM05D004764 ORTHO05D005580 3.5e-37 159.5 245 42.0
Glyma.09G184900 Glycine max HOM05D004764 ORTHO05D005580 3.5e-37 159.5 244 43.0
AL1G59680 Arabidopsis lyrata HOM05D004764 ORTHO05D005580 4.6e-37 159.1 245 42.4
A06p02240 Brassica napus HOM05D004764 ORTHO05D005580 4.6e-37 159.1 245 42.0
Migut.F01566 Erythranthe guttata HOM05D004764 ORTHO05D005580 6.0e-37 158.7 253 41.5
Oeu013001.1 Olea europaea HOM05D004764 ORTHO05D005580 6.0e-37 158.7 248 42.3
Thhalv10011542m.g Eutrema salsugineum HOM05D004764 ORTHO05D005580 1.0e-36 157.9 244 41.4
Gohir.D10G242400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 1.3e-36 157.5 237 44.3
Lj1A432T27 Lonicera japonica HOM05D004764 ORTHO05D005580 1.3e-36 157.5 252 42.1
Lalb_Chr22g0353041 Lupinus albus HOM05D004764 ORTHO05D005580 1.7e-36 157.1 244 42.2
Sopen03g006610 Solanum pennellii HOM05D004764 ORTHO05D005580 3.9e-36 156.0 252 41.3
Sc11g0007530 Simmondsia chinensis HOM05D004764 ORTHO05D005580 5.1e-36 155.6 238 42.9
Solyc04g071730.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 5.1e-36 155.6 252 40.5
PGSC0003DMG400006372 Solanum tuberosum HOM05D004764 ORTHO05D005580 5.1e-36 155.6 252 40.5
Lalb_Chr14g0371191 Lupinus albus HOM05D004764 ORTHO05D005580 6.6e-36 155.2 244 42.6
EL10Ac2g04766 Beta vulgaris HOM05D004764 ORTHO05D005580 8.6e-36 154.8 244 41.4
BcaB02g11053 Brassica carinata HOM05D004764 ORTHO05D005580 8.6e-36 154.8 246 41.1
CAN.G2159.1 Capsicum annuum HOM05D004764 ORTHO05D005580 1.1e-35 154.5 252 40.5
Carub.0001s4061 Capsella rubella HOM05D004764 ORTHO05D005580 1.5e-35 154.1 245 41.2
AT1G51740 Arabidopsis thaliana HOM05D004764 ORTHO05D005580 1.9e-35 153.7 245 41.6
SalBow6G7043 Salvia bowleyana HOM05D004764 ORTHO05D005580 1.9e-35 153.7 252 41.7
Sopen04g027710 Solanum pennellii HOM05D004764 ORTHO05D005580 1.9e-35 153.7 252 40.1
SGA_v2.0_scaffold130G34221 Striga asiatica HOM05D004764 ORTHO05D005580 2.5e-35 153.3 252 40.1
CAN.G308.66 Capsicum annuum HOM05D004764 ORTHO05D005580 3.3e-35 152.9 252 40.1
Lj1C949T1 Lonicera japonica HOM05D004764 ORTHO05D005580 3.3e-35 152.9 252 42.5
CARHR041910 Cardamine hirsuta HOM05D004764 ORTHO05D005580 4.3e-35 152.5 244 40.2
ClCG11G006420 Citrullus lanatus HOM05D004764 ORTHO05D005580 4.3e-35 152.5 244 43.0
FAN01G0026 Fragaria x ananassa HOM05D004764 ORTHO05D005580 4.3e-35 152.5 279 38.7
Nitab4.5_0000344g0160 Nicotiana tabacum HOM05D004764 ORTHO05D005580 5.6e-35 152.1 252 41.3
AUR62032348 Chenopodium quinoa HOM05D004764 ORTHO05D005580 7.3e-35 151.8 242 39.3
Ah.02g115950 Amaranthus hybridus HOM05D004764 ORTHO05D005580 1.2e-34 151.0 244 39.3
Nitab4.5_0012769g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.6e-34 150.6 252 40.9
Lsat_1_v5_gn_9_12660 Lactuca sativa HOM05D004764 ORTHO05D005580 2.8e-34 149.8 244 41.4
PSO585G0029 Papaver somniferum HOM05D004764 ORTHO05D005580 2.8e-34 149.8 246 41.1
Eucgr.G03020 Eucalyptus grandis HOM05D004764 ORTHO05D005580 6.2e-34 148.7 243 42.8
vmacro10073 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 8.1e-34 148.3 186 46.8
Aqoxy7G01280 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 3.1e-33 146.4 248 39.5
ECA233G3311 Erigeron canadensis HOM05D004764 ORTHO05D005580 3.1e-33 146.4 253 39.5
PSO384G2817 Papaver somniferum HOM05D004764 ORTHO05D005580 3.1e-33 146.4 246 41.1
Nitab4.5_0011923g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 5.2e-33 145.6 187 46.5
HPP92_027811 Vanilla planifolia HOM05D004764 ORTHO05D005580 1.5e-32 144.1 195 48.2
Actinidia00927 Actinidia chinensis HOM05D004764 ORTHO05D005580 2.0e-32 143.7 188 46.8
Aqoxy1G00756 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 2.0e-32 143.7 246 39.8
FAN06G0806 Fragaria x ananassa HOM05D004764 ORTHO05D005580 5.8e-32 142.1 180 47.8
Phvul.004G157700 Phaseolus vulgaris HOM05D004764 ORTHO05D005580 9.9e-32 141.4 180 47.8
Solyc03g033850.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 2.2e-31 140.2 240 39.6
Peaxi162Scf00064g00126 Petunia axillaris HOM05D004764 ORTHO05D005580 1.6e-29 134.0 238 39.1
Potri.008G063100 Populus trichocarpa HOM05D004764 ORTHO05D005580 1.6e-29 134.0 196 45.9
Ah.16g104720 Amaranthus hybridus HOM05D004764 ORTHO05D005580 6.0e-29 132.1 180 43.3
Lj1C433T7 Lonicera japonica HOM05D004764 ORTHO05D005580 1.0e-28 131.3 231 39.0
Peaxi162Scf00010g01114 Petunia axillaris HOM05D004764 ORTHO05D005580 1.3e-28 131.0 238 38.7
Os04g0530400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 3.0e-28 129.8 250 36.4
ATR0736G027 Amborella trichopoda HOM05D004764 ORTHO05D005580 3.9e-28 129.4 245 37.6
Os12g0154400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 3.9e-28 129.4 250 36.4
Zm00001eb429110 Zea mays HOM05D004764 ORTHO05D005580 3.9e-28 129.4 251 36.7
AUR62041843 Chenopodium quinoa HOM05D004764 ORTHO05D005580 1.5e-27 127.5 180 41.1
SHI03532 Sapria himalayana HOM05D004764 ORTHO05D005580 5.6e-27 125.6 247 37.7
Nn5g27977 Nelumbo nucifera HOM05D004764 ORTHO05D005580 3.4e-24 116.3 196 41.3
Glyma.07G091000 Glycine max HOM05D004764 ORTHO05D005580 7.6e-24 115.2 196 40.8
unitig_0.g2163 Utricularia gibba HOM05D004764 ORTHO05D005580 5.4e-22 109.0 255 32.5
Nitab4.5_0002828g0150 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.6e-21 107.5 221 36.7
SEGI_31890 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 3.5e-21 106.3 248 31.5
Actinidia13909 Actinidia chinensis HOM05D004764 ORTHO05D005580 5.6e-19 99.0 75 73.3
Lj1C435T9 Lonicera japonica HOM05D004764 ORTHO05D005580 7.3e-19 98.6 217 33.6
Actinidia27825 Actinidia chinensis HOM05D004764 ORTHO05D005580 1.3e-18 97.8 76 71.1
TPR.G27934 Trifolium pratense HOM05D004764 ORTHO05D005580 2.8e-18 96.7 89 60.7
PGSC0003DMG400022548 Solanum tuberosum HOM05D004764 ORTHO05D005580 1.8e-17 94.0 76 68.4
C06p13300 Brassica napus HOM05D001194 ORTHO05D005580 1.2e-16 91.3 77 64.9
Glyma.17G199500 Glycine max HOM05D004764 ORTHO05D005580 1.5e-16 90.9 76 65.8
Zm00001eb427200 Zea mays HOM05D004764 ORTHO05D005580 3.4e-16 89.7 67 68.7
Oeu032670.1 Olea europaea HOM05D004764 ORTHO05D005580 5.8e-16 89.0 85 57.6
BolC6t36490H Brassica oleracea HOM05D001194 ORTHO05D000015 7.6e-16 88.6 73 64.4
BcaC08g43937 Brassica carinata HOM05D001194 ORTHO05D004786 9.9e-16 88.2 71 66.2
PSO339G3467 Papaver somniferum HOM05D004764 ORTHO05D005580 1.7e-15 87.4 70 70.0
CDE09G0086 Ceratophyllum demersum HOM05D004764 ORTHO05D005580 7.1e-14 82.0 61 72.1
AagrBONN_evm.TU.Sc2ySwM_368.928 Anthoceros agrestis HOM05D004764 ORTHO05D005580 1.6e-13 80.9 182 34.6
Mapoly0024s0083 Marchantia polymorpha HOM05D004764 ORTHO05D005580 2.7e-13 80.1 185 34.6
Pp3c6_24680 Physcomitrium patens HOM05D004764 ORTHO05D005580 1.3e-12 77.8 177 32.2
SMO356G0668 Selaginella moellendorffii HOM05D004764 ORTHO05D005580 6.2e-10 68.9 92 45.7
BcaC08g43936 Brassica carinata HOM05D004764 ORTHO05D005580 7.6e-08 62.0 84 44.0
vmacro10891 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 7.6e-08 62.0 50 68.0
BraA05t20843Z Brassica rapa HOM05D000051 ORTHO05D000015 2.9e-07 60.1 34 76.5
HPP92_004405 Vanilla planifolia HOM05D004764 ORTHO05D005580 3.2e-06 56.6 96 37.5
CBR_g29687 Chara braunii HOM05D004764 ORTHO05D005580 4.2e-06 56.2 52 55.8


User provided reference genes

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