Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0040500 Salix brachista HOM05D005580 ORTHO05D006395 2.3e-125 452.2 225 100.0
Potri.008G055800 Populus trichocarpa HOM05D005580 ORTHO05D006395 2.8e-115 418.7 225 93.3
Potri.010G203900 Populus trichocarpa HOM05D005580 ORTHO05D006395 2.7e-110 402.1 225 89.8
Sabra10G0157500 Salix brachista HOM05D005580 ORTHO05D006395 1.2e-105 386.7 226 86.7
Manes.07G116200 Manihot esculenta HOM05D005580 ORTHO05D006395 2.5e-103 379.0 227 85.0
Thecc.10G042400 Theobroma cacao HOM05D005580 ORTHO05D006395 5.2e-101 371.3 225 84.9
MD01G1134100 Malus domestica HOM05D005580 ORTHO05D006395 7.0e-98 360.9 230 80.0
CiPaw.01G287400 Carya illinoinensis HOM05D005580 ORTHO05D006395 9.2e-98 360.5 226 82.3
QL08p059794 Quercus lobata HOM05D005580 ORTHO05D006395 1.6e-97 359.8 233 79.4
TWI38G1118 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 2.7e-97 359.0 227 81.5
TWI63G0967 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 1.7e-96 356.3 226 81.0
Cpa.g.sc1.404 Carica papaya HOM05D005580 ORTHO05D006395 2.3e-96 355.9 234 78.2
GSVIVG01016552001 Vitis vinifera HOM05D005580 ORTHO05D006395 2.9e-96 355.5 210 85.2
Manes.10G030300 Manihot esculenta HOM05D005580 ORTHO05D006395 2.5e-95 352.4 212 83.0
FvH4_7g22470 Fragaria vesca HOM05D005580 ORTHO05D006395 3.3e-95 352.1 231 78.4
FAN03G1496 Fragaria x ananassa HOM05D005580 ORTHO05D006395 3.3e-95 352.1 231 78.4
MD07G1198300 Malus domestica HOM05D005580 ORTHO05D006395 3.3e-95 352.1 228 78.9
Gohir.A10G218800 Gossypium hirsutum HOM05D005580 ORTHO05D006395 5.6e-95 351.3 221 79.2
FAN06G0736 Fragaria x ananassa HOM05D005580 ORTHO05D006395 9.5e-95 350.5 231 77.9
FAN06G1328 Fragaria x ananassa HOM05D005580 ORTHO05D006395 9.5e-95 350.5 231 77.9
VMungo1383G1027 Vigna mungo HOM05D005580 ORTHO05D006395 1.2e-94 350.1 211 82.5
FAN10G2347 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.6e-94 349.7 231 77.9
Gohir.D10G228400 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.6e-94 349.7 221 78.7
Gorai.011G260800 Gossypium raimondii HOM05D005580 ORTHO05D006395 1.6e-94 349.7 221 78.7
Duzib128G0371 Durio zibethinus HOM05D005580 ORTHO05D006395 2.1e-94 349.4 226 81.0
CiPaw.02G183900 Carya illinoinensis HOM05D005580 ORTHO05D006395 3.6e-94 348.6 228 76.3
RcHm_v2.0_Chr1g0367081 Rosa chinensis HOM05D005580 ORTHO05D006395 3.6e-94 348.6 231 77.9
Duzib106G1822 Durio zibethinus HOM05D005580 ORTHO05D006395 4.7e-94 348.2 210 83.3
Eucgr.G02934 Eucalyptus grandis HOM05D005580 ORTHO05D006395 4.7e-94 348.2 203 85.2
Cfa001474 Carpinus fangiana HOM05D005580 ORTHO05D006395 6.2e-94 347.8 236 75.8
Gorai.013G022300 Gossypium raimondii HOM05D005580 ORTHO05D006395 4.0e-93 345.1 213 82.2
Phvul.008G010700 Phaseolus vulgaris HOM05D005580 ORTHO05D006395 6.8e-93 344.4 200 84.0
Prupe.2G235300 Prunus persica HOM05D005580 ORTHO05D006395 2.6e-92 342.4 229 78.2
ClCG09G019730 Citrullus lanatus HOM05D005580 ORTHO05D006395 4.4e-92 341.7 208 80.3
FAN01G0694 Fragaria x ananassa HOM05D005580 ORTHO05D006395 4.4e-92 341.7 229 76.4
FAN01G2215 Fragaria x ananassa HOM05D005580 ORTHO05D006395 4.4e-92 341.7 229 76.4
Gohir.A13G019300 Gossypium hirsutum HOM05D005580 ORTHO05D006395 5.8e-92 341.3 212 82.1
Gohir.D13G019900 Gossypium hirsutum HOM05D005580 ORTHO05D006395 7.5e-92 340.9 213 81.2
MELO3C021630.2 Cucumis melo HOM05D005580 ORTHO05D006395 9.8e-92 340.5 240 72.5
Oeu064380.1 Olea europaea HOM05D005580 ORTHO05D006395 9.8e-92 340.5 230 76.5
Glyma.02G091600 Glycine max HOM05D005580 ORTHO05D006395 1.3e-91 340.1 228 76.3
Glyma.18G291400 Glycine max HOM05D005580 ORTHO05D006395 1.3e-91 340.1 230 76.1
Lalb_Chr17g0336141 Lupinus albus HOM05D005580 ORTHO05D006395 1.3e-91 340.1 225 77.3
COL.COLO4_15040 Corchorus olitorius HOM05D005580 ORTHO05D006395 2.9e-91 339.0 211 82.5
Sed0002022 Sechium edule HOM05D005580 ORTHO05D006395 2.9e-91 339.0 223 75.3
Sed0020308 Sechium edule HOM05D005580 ORTHO05D006395 2.9e-91 339.0 213 77.9
CANSAT56G2481 Cannabis sativa HOM05D005580 ORTHO05D006395 6.4e-91 337.8 216 78.7
Nitab4.5_0013062g0010 Nicotiana tabacum HOM05D005580 ORTHO05D006395 1.1e-90 337.0 212 78.3
TAR623G0785 Trochodendron aralioides HOM05D005580 ORTHO05D006395 3.2e-90 335.5 228 76.8
Cc02_g07860 Coffea canephora HOM05D005580 ORTHO05D006395 5.4e-90 334.7 235 75.7
CsaV3_5G026670 Cucumis sativus L. HOM05D005580 ORTHO05D006395 7.0e-90 334.3 209 78.9
Atru.chr12.452 Acer truncatum HOM05D005580 ORTHO05D006395 9.2e-90 334.0 209 82.3
Atru.chr12.474 Acer truncatum HOM05D005580 ORTHO05D006395 9.2e-90 334.0 209 82.3
Nitab4.5_0001097g0030 Nicotiana tabacum HOM05D005580 ORTHO05D006395 1.6e-89 333.2 210 79.0
DCAR_011695 Daucus carota HOM05D005580 ORTHO05D006395 1.3e-88 330.1 228 76.8
CANSAT56G4483 Cannabis sativa HOM05D005580 ORTHO05D006395 1.7e-88 329.7 214 77.6
Lj1g0024567 Lotus japonicus HOM05D005580 ORTHO05D006395 2.3e-88 329.3 213 77.9
vmacro07170 Vaccinium macrocarpon HOM05D005580 ORTHO05D006395 3.0e-88 328.9 223 75.3
CSS0041204 Camellia sinensis var. sinensis HOM05D005580 ORTHO05D006395 1.5e-87 326.6 218 77.1
TPR.G23775 Trifolium pratense HOM05D005580 ORTHO05D006395 1.6e-86 323.2 212 76.4
Medtr7g026320 Medicago truncatula HOM05D005580 ORTHO05D006395 2.8e-86 322.4 210 76.2
DCAR_027619 Daucus carota HOM05D005580 ORTHO05D006395 6.2e-86 321.2 230 74.8
HanXRQChr14g0457951 Helianthus annuus HOM05D005580 ORTHO05D006395 6.2e-86 321.2 212 75.9
Peaxi162Scf00886g00003 Petunia axillaris HOM05D005580 ORTHO05D006395 8.1e-86 320.9 208 78.8
Lsat_1_v5_gn_2_119121 Lactuca sativa HOM05D005580 ORTHO05D006395 3.1e-85 318.9 234 71.4
Solyc05g054450.1 Solanum lycopersicum HOM05D005580 ORTHO05D006395 3.1e-85 318.9 210 76.2
Rhsim03G0130700 Rhododendron simsii HOM05D005580 ORTHO05D006395 4.0e-85 318.5 230 71.7
Sopen05g032940 Solanum pennellii HOM05D005580 ORTHO05D006395 4.0e-85 318.5 210 76.2
TAR633G1881 Trochodendron aralioides HOM05D005580 ORTHO05D006395 2.0e-84 316.2 210 75.2
Ca_26455_v3 Cicer arietinum L. HOM05D005580 ORTHO05D006395 5.8e-84 314.7 211 74.9
PGSC0003DMG400023532 Solanum tuberosum HOM05D005580 ORTHO05D006395 5.8e-84 314.7 209 75.1
THA.LOC104810028 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 9.8e-84 313.9 227 71.8
MBI05_g22035_MAGBIO Magnolia biondii HOM05D005580 ORTHO05D006395 4.9e-83 311.6 225 73.3
Lalb_Chr10g0091641 Lupinus albus HOM05D005580 ORTHO05D006395 1.4e-82 310.1 230 71.7
MSTRG.8252 Avicennia marina HOM05D005580 ORTHO05D006395 3.2e-82 308.9 208 74.0
Lj8C84T10 Lonicera japonica HOM05D005580 ORTHO05D006395 4.1e-82 308.5 230 69.6
Psat3g161760 Pisum sativum HOM05D005580 ORTHO05D006395 5.4e-82 308.1 231 69.7
Nn2g13341 Nelumbo nucifera HOM05D005580 ORTHO05D006395 7.1e-82 307.8 227 70.9
ECA238G1104 Erigeron canadensis HOM05D005580 ORTHO05D006395 1.6e-81 306.6 205 74.6
Lsat_1_v5_gn_8_15580 Lactuca sativa HOM05D005580 ORTHO05D006395 4.6e-81 305.1 198 77.3
PGR142G3643 Punica granatum HOM05D005580 ORTHO05D006395 4.6e-81 305.1 232 71.6
Nn2g11101 Nelumbo nucifera HOM05D005580 ORTHO05D006395 1.0e-80 303.9 206 75.7
HanXRQChr02g0037481 Helianthus annuus HOM05D005580 ORTHO05D006395 2.3e-80 302.8 202 71.8
THA.LOC104824274 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 5.6e-79 298.1 222 70.3
SalBow6G2402 Salvia bowleyana HOM05D005580 ORTHO05D006395 6.2e-78 294.7 224 66.5
PSO339G4490 Papaver somniferum HOM05D005580 ORTHO05D006395 3.1e-77 292.4 206 69.9
PSO384G2205 Papaver somniferum HOM05D005580 ORTHO05D006395 6.8e-77 291.2 206 69.4
Sp5g07050 Schrenkiella parvula HOM05D005580 ORTHO05D006395 6.8e-77 291.2 208 72.1
CsaV3_5G008020 Cucumis sativus L. HOM05D005580 ORTHO05D006395 8.9e-77 290.8 219 67.6
Thhalv10010708m.g Eutrema salsugineum HOM05D005580 ORTHO05D006395 1.2e-76 290.4 208 71.2
Sc10g0001550 Simmondsia chinensis HOM05D005580 ORTHO05D006395 5.8e-76 288.1 234 66.2
THA.LOC104807715 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 5.8e-76 288.1 227 65.6
PSO339G6083 Papaver somniferum HOM05D005580 ORTHO05D006395 9.9e-76 287.3 197 74.1
Dinv26015 Davidia involucrata HOM05D005580 ORTHO05D006395 3.7e-75 285.4 203 70.4
PSO151G0057 Papaver somniferum HOM05D005580 ORTHO05D006395 3.7e-75 285.4 197 73.6
HPP92_019446 Vanilla planifolia HOM05D005580 ORTHO05D006395 3.7e-75 285.4 228 64.9
MELO3C023848.2 Cucumis melo HOM05D005580 ORTHO05D006395 8.4e-75 284.3 210 67.1
ClCG07G003270 Citrullus lanatus HOM05D005580 ORTHO05D006395 3.2e-74 282.3 218 65.1
A09p48340 Brassica napus HOM05D005580 ORTHO05D006395 5.4e-74 281.6 220 66.8
BraA09t40286Z Brassica rapa HOM05D005580 ORTHO05D006395 5.4e-74 281.6 220 66.8
Os05g0459300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 7.1e-74 281.2 195 72.8
BolC8t50680H Brassica oleracea HOM05D005580 ORTHO05D006395 1.6e-73 280.0 220 66.8
unitig_8.g3317 Utricularia gibba HOM05D005580 ORTHO05D006395 1.6e-73 280.0 225 66.7
BcaC02g09755 Brassica carinata HOM05D005580 ORTHO05D006395 2.1e-73 279.6 230 65.7
C04p36960 Brassica napus HOM05D005580 ORTHO05D006395 2.1e-73 279.6 230 65.7
BolC4t25261H Brassica oleracea HOM05D005580 ORTHO05D006395 2.1e-73 279.6 230 65.7
C08p30460 Brassica napus HOM05D005580 ORTHO05D006395 3.5e-73 278.9 220 65.9
BcaC07g39844 Brassica carinata HOM05D005580 ORTHO05D006395 4.6e-73 278.5 220 65.9
BraA04t16163Z Brassica rapa HOM05D005580 ORTHO05D006395 4.6e-73 278.5 230 66.1
Carub.0005s2214 Capsella rubella HOM05D005580 ORTHO05D006395 6.0e-73 278.1 204 70.6
ATR0559G355 Amborella trichopoda HOM05D005580 ORTHO05D006395 7.8e-73 277.7 221 64.7
C08p30630 Brassica napus HOM05D005580 ORTHO05D006395 7.8e-73 277.7 220 65.9
A04p04530 Brassica napus HOM05D005580 ORTHO05D006395 1.3e-72 276.9 230 66.1
AL5G36570 Arabidopsis lyrata HOM05D005580 ORTHO05D006395 5.1e-72 275.0 230 65.2
AT3G55420 Arabidopsis thaliana HOM05D005580 ORTHO05D006395 2.5e-71 272.7 230 64.8
BcaB01g00102 Brassica carinata HOM05D005580 ORTHO05D006395 3.3e-71 272.3 227 64.8
Aa31LG10G10450 Aethionema arabicum HOM05D005580 ORTHO05D006395 5.6e-71 271.6 193 71.5
SEGI_33908 Sequoiadendron giganteum HOM05D005580 ORTHO05D006395 2.8e-70 269.2 202 66.3
Ah.16g102300 Amaranthus hybridus HOM05D005580 ORTHO05D006395 3.6e-70 268.9 223 61.0
Sed0012553 Sechium edule HOM05D005580 ORTHO05D006395 6.2e-70 268.1 207 64.7
AUR62012083 Chenopodium quinoa HOM05D005580 ORTHO05D006395 1.3e-67 260.4 218 61.9
Dinv03047 Davidia involucrata HOM05D005580 ORTHO05D006395 1.7e-67 260.0 229 67.2
CDE02G1824 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 8.4e-67 257.7 204 64.2
Actinidia02948 Actinidia chinensis HOM05D005580 ORTHO05D006395 2.4e-66 256.1 216 64.8
BcaC07g39859 Brassica carinata HOM05D005580 ORTHO05D006395 2.3e-64 249.6 210 61.9
Lj1P937T48 Lonicera japonica HOM05D005580 ORTHO05D006395 9.0e-61 237.7 143 81.8
CARHR165440 Cardamine hirsuta HOM05D005580 ORTHO05D006395 4.6e-57 225.3 190 65.3
BcaB02g08423 Brassica carinata HOM05D005580 ORTHO05D006395 1.7e-56 223.4 190 64.7
Os12g0571300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 9.6e-55 217.6 198 54.5
Cc05_g01760 Coffea canephora HOM05D005580 ORTHO05D006395 6.2e-54 214.9 219 55.7
Ciclev10032947m.g Citrus clementina HOM05D005580 ORTHO05D006395 3.1e-53 212.6 120 86.7
AUR62039380 Chenopodium quinoa HOM05D000020 ORTHO05D001617 1.7e-51 206.8 166 63.9
CDE08G0377 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 2.0e-44 183.3 204 52.9
Aqoxy4G02929 Aquilegia oxysepala HOM05D005580 ORTHO05D006395 2.2e-43 179.9 139 68.3
SGA_v2.0_scaffold2G01004 Striga asiatica HOM05D005580 ORTHO05D006395 1.1e-42 177.6 121 69.4
Oeu048246.1 Olea europaea HOM05D005580 ORTHO05D006395 8.7e-40 167.9 104 77.9
SGA_v2.0_scaffold221G42666 Striga asiatica HOM05D005580 ORTHO05D006395 4.3e-39 165.6 105 71.4
Migut.F01495 Erythranthe guttata HOM05D005580 ORTHO05D006395 1.1e-37 161.0 102 76.5
SEGI_21732 Sequoiadendron giganteum HOM05D003049 ORTHO05D003531 2.9e-19 99.8 62 74.2
arahy.Tifrunner.gnm1.ann1.HEV3CF Arachis hypogaea HOM05D000969 ORTHO05D011765 1.3e-14 84.3 88 54.5
AagrBONN_evm.TU.Sc2ySwM_117.4197 Anthoceros agrestis HOM05D025074 ORTHO05D006395 1.3e-06 57.8 163 25.2
AagrBONN_evm.TU.Sc2ySwM_368.2233 Anthoceros agrestis HOM05D025074 ORTHO05D006395 3.7e-06 56.2 192 27.6


User provided reference genes

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