Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0037800 Salix brachista HOM05D006083 ORTHO05D007634 0.0e+00 3372.8 1734 100.0
Potri.008G052500 Populus trichocarpa HOM05D006083 ORTHO05D007634 0.0e+00 2986.8 1722 89.2
Potri.010G208200 Populus trichocarpa HOM05D006083 ORTHO05D007634 0.0e+00 2491.8 1730 76.9
Manes.07G113300 Manihot esculenta HOM05D006083 ORTHO05D007634 0.0e+00 1728.0 1734 56.4
Cfa001507 Carpinus fangiana HOM05D006083 ORTHO05D007634 0.0e+00 1552.0 1725 52.3
Haze_17036 Corylus avellana HOM05D006083 ORTHO05D007634 0.0e+00 1548.9 1753 51.5
Thecc.10G046700 Theobroma cacao HOM05D006083 ORTHO05D007634 0.0e+00 1476.1 1752 49.9
QL08p059019 Quercus lobata HOM05D006083 ORTHO05D007634 0.0e+00 1467.6 1758 50.2
Atru.chr12.505 Acer truncatum HOM05D006083 ORTHO05D007634 0.0e+00 1444.5 1597 51.5
COL.COLO4_14970 Corchorus olitorius HOM05D006083 ORTHO05D007634 0.0e+00 1439.1 1752 48.7
CiPaw.01G284100 Carya illinoinensis HOM05D006083 ORTHO05D007634 0.0e+00 1421.0 1753 49.1
TWI15G0674 Tripterygium wilfordii HOM05D006083 ORTHO05D007634 0.0e+00 1372.8 1722 48.4
Gorai.012G069900 Gossypium raimondii HOM05D006083 ORTHO05D007634 0.0e+00 1365.5 1745 47.9
Gohir.D04G062600 Gossypium hirsutum HOM05D006083 ORTHO05D007634 0.0e+00 1361.3 1743 47.7
Gohir.A05G349900 Gossypium hirsutum HOM05D006083 ORTHO05D007634 0.0e+00 1360.9 1746 47.3
Prupe.2G231200 Prunus persica HOM05D006083 ORTHO05D007634 0.0e+00 1353.6 1747 48.3
Dinv31433 Davidia involucrata HOM05D006083 ORTHO05D007634 0.0e+00 1327.8 1755 47.7
Duzib114G0803 Durio zibethinus HOM05D006083 ORTHO05D007634 0.0e+00 1308.5 1471 51.0
FAN06G5109 Fragaria x ananassa HOM05D006083 ORTHO05D007634 0.0e+00 1307.4 1765 46.2
FAN06G0387 Fragaria x ananassa HOM05D006083 ORTHO05D007634 0.0e+00 1300.0 1764 46.1
MD07G1193600 Malus domestica HOM05D006083 ORTHO05D007634 0.0e+00 1298.1 1841 44.4
FAN03G2083 Fragaria x ananassa HOM05D006083 ORTHO05D007634 0.0e+00 1296.2 1773 45.7
FAN01G1089 Fragaria x ananassa HOM05D006083 ORTHO05D007634 0.0e+00 1293.1 1773 45.8
FvH4_7g21930 Fragaria vesca HOM05D006083 ORTHO05D007634 0.0e+00 1274.6 1742 45.9
CSS0008531 Camellia sinensis var. sinensis HOM05D006083 ORTHO05D007634 0.0e+00 1252.3 1768 44.9
Actinidia02966 Actinidia chinensis HOM05D006083 ORTHO05D007634 0.0e+00 1203.7 1764 43.8
Glyma.18G288300 Glycine max HOM05D006083 ORTHO05D007634 0.0e+00 1197.6 1689 44.5
CANSAT56G1432 Cannabis sativa HOM05D006083 ORTHO05D007634 0.0e+00 1194.5 1743 43.8
GSVIVG01016589001 Vitis vinifera HOM05D006083 ORTHO05D007634 0.0e+00 1193.7 1732 45.3
Ciclev10030497m.g Citrus clementina HOM05D006083 ORTHO05D007634 0.0e+00 1158.7 1735 44.3
Lj1g0008101 Lotus japonicus HOM05D006083 ORTHO05D007634 0.0e+00 1149.0 1692 43.6
VMungo1383G1537 Vigna mungo HOM05D006083 ORTHO05D007634 0.0e+00 1131.3 1690 42.8
arahy.Tifrunner.gnm1.ann1.ES2X5Y Arachis hypogaea HOM05D006083 ORTHO05D007634 0.0e+00 1125.5 1731 42.2
arahy.Tifrunner.gnm1.ann1.V7LDKI Arachis hypogaea HOM05D006083 ORTHO05D007634 0.0e+00 1125.5 1731 42.2
Rhsim03G0132700 Rhododendron simsii HOM05D006083 ORTHO05D007634 0.0e+00 1106.7 1766 41.5
Ca_07227_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 0.0e+00 1105.1 1638 43.0
Psat3g185080 Pisum sativum HOM05D006083 ORTHO05D007634 0.0e+00 1085.9 1702 41.2
Medtr7g024000 Medicago truncatula HOM05D006083 ORTHO05D007634 0.0e+00 1079.3 1694 41.7
Lalb_Chr10g0091771 Lupinus albus HOM05D006083 ORTHO05D007634 1.1e-307 1060.8 1273 46.7
ClCG09G020050 Citrullus lanatus HOM05D006083 ORTHO05D007634 5.4e-307 1058.5 1791 41.4
TAR623G0128 Trochodendron aralioides HOM05D006083 ORTHO05D007634 1.5e-304 1050.4 1637 42.2
Nn2g12936 Nelumbo nucifera HOM05D006083 ORTHO05D007634 9.9e-301 1037.7 1763 40.3
MELO3C025449.2 Cucumis melo HOM05D006083 ORTHO05D007634 1.9e-299 1033.5 1711 41.6
Eucgr.G02918 Eucalyptus grandis HOM05D006083 ORTHO05D007634 5.5e-299 1031.9 1686 41.7
CsaV3_5G026410 Cucumis sativus L. HOM05D006083 ORTHO05D007634 7.4e-296 1021.5 1700 41.5
Lalb_Chr04g0257841 Lupinus albus HOM05D006083 ORTHO05D007634 1.3e-295 1020.8 1275 45.4
PGR142G3850 Punica granatum HOM05D006083 ORTHO05D007634 2.6e-293 1013.1 1710 40.2
vmacro07157 Vaccinium macrocarpon HOM05D006083 ORTHO05D007634 1.4e-291 1007.3 2074 36.0
Sed0020975 Sechium edule HOM05D006083 ORTHO05D007634 2.4e-286 989.9 1719 40.5
Lj1A934T60 Lonicera japonica HOM05D006083 ORTHO05D007634 4.1e-286 989.2 1330 45.7
Hund12547 Selenicereus undatus HOM05D006083 ORTHO05D007634 4.2e-283 979.2 1788 39.5
TPR.G15506 Trifolium pratense HOM05D006083 ORTHO05D007634 1.8e-281 973.8 1289 43.8
THA.LOC104810174 Tarenaya hassleriana HOM05D006083 ORTHO05D007634 3.7e-279 966.1 1664 40.4
FAN10G0925 Fragaria x ananassa HOM05D006083 ORTHO05D007634 3.8e-276 956.1 1488 43.3
Aqoxy4G02985 Aquilegia oxysepala HOM05D006083 ORTHO05D007634 5.7e-272 942.2 1767 37.1
EL10Ac2g03425 Beta vulgaris HOM05D006083 ORTHO05D007634 5.0e-268 929.1 1702 39.0
Sopen04g005570 Solanum pennellii HOM05D006083 ORTHO05D007634 6.5e-268 928.7 1739 38.0
Sc06g0002680 Simmondsia chinensis HOM05D006083 ORTHO05D007634 8.5e-268 928.3 1286 44.3
Solyc04g011380.4 Solanum lycopersicum HOM05D006083 ORTHO05D007634 5.5e-267 925.6 1774 37.1
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 1.8e-265 920.6 1726 39.0
Peaxi162Scf00060g00026 Petunia axillaris HOM05D006083 ORTHO05D007634 5.7e-264 915.6 1700 38.2
CAN.G786.23 Capsicum annuum HOM05D006083 ORTHO05D007634 9.7e-264 914.8 1678 38.3
Cc02_g08180 Coffea canephora HOM05D006083 ORTHO05D007634 5.3e-262 909.1 1714 37.9
AUR62040954 Chenopodium quinoa HOM05D006083 ORTHO05D007634 2.5e-259 900.2 1740 37.0
Thhalv10016135m.g Eutrema salsugineum HOM05D006083 ORTHO05D007634 6.1e-258 895.6 1682 38.5
MBI14_g18543_MAGBIO Magnolia biondii HOM05D006083 ORTHO05D007634 6.7e-257 892.1 1834 36.1
DCAR_027665 Daucus carota HOM05D006083 ORTHO05D007634 2.6e-256 890.2 1815 36.2
AT2G39580 Arabidopsis thaliana HOM05D006083 ORTHO05D007634 4.5e-253 879.4 1709 39.1
SHI22592 Sapria himalayana HOM05D006083 ORTHO05D007634 3.8e-252 876.3 1823 36.8
AL4G36990 Arabidopsis lyrata HOM05D006083 ORTHO05D007634 2.7e-250 870.2 1642 38.7
CARHR134450 Cardamine hirsuta HOM05D006083 ORTHO05D007634 3.6e-250 869.8 1672 38.4
AUR62038373 Chenopodium quinoa HOM05D006083 ORTHO05D007634 1.3e-247 861.3 1655 38.1
C04p67440 Brassica napus HOM05D006083 ORTHO05D007634 1.4e-246 857.8 1685 37.9
BolC4t28242H Brassica oleracea HOM05D006083 ORTHO05D007634 5.4e-246 855.9 1666 37.9
Sp4g21870 Schrenkiella parvula HOM05D006083 ORTHO05D007634 3.5e-245 853.2 1710 37.0
PSO339G3664 Papaver somniferum HOM05D006083 ORTHO05D007634 5.9e-245 852.4 1782 36.0
Carub.0004s2165 Capsella rubella HOM05D006083 ORTHO05D007634 2.9e-244 850.1 1650 37.9
PSO384G3245 Papaver somniferum HOM05D006083 ORTHO05D007634 1.1e-243 848.2 1780 36.1
BraA04t18470Z Brassica rapa HOM05D006083 ORTHO05D007634 4.2e-243 846.3 1671 37.8
Aa31LG5G20040 Aethionema arabicum HOM05D006083 ORTHO05D007634 6.1e-242 842.4 1675 37.7
A04p30380 Brassica napus HOM05D006083 ORTHO05D007634 1.4e-241 841.3 1702 37.5
Phvul.008G013732 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 1.5e-240 837.8 914 48.1
Oeu040905.3 Olea europaea HOM05D006083 ORTHO05D007634 3.3e-227 793.5 1295 39.4
HanXRQChr09g0247731 Helianthus annuus HOM05D006083 ORTHO05D007634 5.6e-227 792.7 1768 35.3
CANSAT56G0880 Cannabis sativa HOM05D006083 ORTHO05D007634 9.8e-224 781.9 814 51.6
Lsat_1_v5_gn_9_65161 Lactuca sativa HOM05D006083 ORTHO05D007634 1.2e-221 775.0 1713 36.2
Ca_29789_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 1.9e-206 724.5 771 49.8
Cpa.g.sc1.374 Carica papaya HOM05D006083 ORTHO05D007634 2.1e-205 721.1 670 54.9
TAR369G0895 Trochodendron aralioides HOM05D006083 ORTHO05D007634 1.1e-203 715.3 707 54.3
RcHm_v2.0_Chr1g0366211 Rosa chinensis HOM05D006083 ORTHO05D007634 2.6e-200 704.1 637 57.3
RcHm_v2.0_Chr1g0366201 Rosa chinensis HOM05D006083 ORTHO05D007634 3.7e-178 630.6 1103 41.5
Nitab4.5_0005525g0010 Nicotiana tabacum HOM05D006083 ORTHO05D007634 6.2e-178 629.8 1677 32.3
ATR0559G184 Amborella trichopoda HOM05D006083 ORTHO05D007634 4.5e-168 597.0 1858 30.0
Zm00001eb028750 Zea mays HOM05D006083 ORTHO05D007634 1.5e-163 582.0 1667 31.3
CDE05G2458 Ceratophyllum demersum HOM05D006083 ORTHO05D007634 2.6e-155 554.7 1617 29.6
Nitab4.5_0003969g0020 Nicotiana tabacum HOM05D006083 ORTHO05D007634 2.6e-155 554.7 1294 35.7
SEGI_22945 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 8.0e-125 453.4 922 30.9
FAN10G2882 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.2e-123 449.5 410 54.9
BcaB06g29099 Brassica carinata HOM05D006083 ORTHO05D007634 7.8e-112 410.2 1154 33.3
Peaxi162Scf00060g00126 Petunia axillaris HOM05D006083 ORTHO05D007634 1.3e-98 366.3 660 37.7
Cpa.g.sc1.375 Carica papaya HOM05D006083 ORTHO05D007634 4.9e-98 364.4 635 39.8
HPP92_018996 Vanilla planifolia HOM05D006083 ORTHO05D007634 6.2e-93 347.4 652 35.3
TAR369G0795 Trochodendron aralioides HOM05D006083 ORTHO05D007634 2.1e-85 322.4 869 34.9
Mapoly0075s0039 Marchantia polymorpha HOM05D006083 ORTHO05D007634 4.2e-81 308.1 905 28.3
Os12g0566500 Oryza sativa ssp. japonica HOM05D006083 ORTHO05D007634 4.3e-78 298.1 463 37.1
SEGI_25206 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 6.4e-74 284.3 541 31.4
Phvul.008G013666 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 1.8e-68 266.2 583 39.5
Actinidia07719 Actinidia chinensis HOM05D001446 ORTHO05D001360 1.6e-61 243.0 666 29.3
Pp3c6_12750 Physcomitrium patens HOM05D006083 ORTHO05D007634 2.4e-60 239.2 841 25.7
AagrBONN_evm.TU.Sc2ySwM_228.2795 Anthoceros agrestis HOM05D000140 ORTHO05D007634 2.0e-59 236.1 640 30.6
SMO367G1201 Selaginella moellendorffii HOM05D006083 ORTHO05D007634 6.9e-52 211.1 1202 24.4
Hund24433 Selenicereus undatus HOM05D006083 ORTHO05D007634 6.9e-52 211.1 809 31.3
Ca_07226_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 4.5e-35 155.2 132 53.8
Lalb_Chr04g0257831 Lupinus albus HOM05D006083 ORTHO05D007634 3.6e-32 145.6 348 36.8
Cpa.g.sc1.376 Carica papaya HOM05D006083 ORTHO05D007634 1.1e-30 140.6 396 32.6
Glyma.02G093802 Glycine max HOM05D006083 ORTHO05D007634 2.0e-30 139.8 138 48.6
Lalb_Chr10g0091761 Lupinus albus HOM05D006083 ORTHO05D007634 4.4e-30 138.7 347 37.5
TPR.G40211 Trifolium pratense HOM05D006083 ORTHO05D007634 5.4e-20 105.1 300 35.7
RcHm_v2.0_Chr3g0492191 Rosa chinensis HOM05D006083 ORTHO05D007634 9.1e-20 104.4 202 43.1
Sc06g0002670 Simmondsia chinensis HOM05D006083 ORTHO05D007634 6.8e-15 88.2 396 31.1
Oeu023787.1 Olea europaea HOM05D006083 ORTHO05D007634 2.2e-13 83.2 368 29.6
HPP92_018997 Vanilla planifolia HOM05D006083 ORTHO05D007634 1.4e-12 80.5 610 26.4
Lsat_1_v5_gn_7_4020 Lactuca sativa HOM05D006083 ORTHO05D007634 2.4e-12 79.7 54 75.9
AL7G29000 Arabidopsis lyrata HOM05D006083 ORTHO05D011291 9.1e-12 77.8 66 51.5
ATR0618G162 Amborella trichopoda HOM05D006083 ORTHO05D007634 4.5e-11 75.5 91 41.8
Ca_29897_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 2.9e-10 72.8 108 40.7
AagrBONN_evm.TU.Sc2ySwM_228.2798 Anthoceros agrestis HOM05D006083 ORTHO05D007634 7.5e-06 58.2 89 44.9


User provided reference genes

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