Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0033700 Salix brachista HOM05D000283 ORTHO05D006673 0.0e+00 2379.0 1324 100.0
Potri.008G047600 Populus trichocarpa HOM05D000283 ORTHO05D006673 0.0e+00 2051.9 1326 87.8
Potri.010G213800 Populus trichocarpa HOM05D000283 ORTHO05D006673 0.0e+00 1694.5 1329 73.7
Sabra10G0165500 Salix brachista HOM05D000283 ORTHO05D006673 0.0e+00 1578.9 1329 67.7
Manes.10G039300 Manihot esculenta HOM05D000283 ORTHO05D006673 5.5e-267 925.2 1330 46.5
Manes.10G039200 Manihot esculenta HOM05D000283 ORTHO05D006673 8.8e-249 864.8 1353 45.2
QL08p057512 Quercus lobata HOM05D000283 ORTHO05D006673 3.2e-243 846.3 1372 43.7
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 1.8e-233 813.9 1365 42.9
Atru.chr12.593 Acer truncatum HOM05D000283 ORTHO05D006673 8.3e-223 778.5 1297 43.7
Duzib114G0075 Durio zibethinus HOM05D000283 ORTHO05D006673 6.6e-220 768.8 1337 41.3
CiPaw.01G279600 Carya illinoinensis HOM05D000283 ORTHO05D006673 2.1e-218 763.8 1409 40.6
CSS0040218 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 1.5e-216 757.7 1379 41.3
CSS0006513 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 2.2e-215 753.8 1379 41.3
Gorai.012G066900 Gossypium raimondii HOM05D000283 ORTHO05D006673 7.3e-211 738.8 1310 41.0
CiPaw.02G178500 Carya illinoinensis HOM05D000283 ORTHO05D006673 4.0e-209 733.0 1509 37.6
TWI38G0559 Tripterygium wilfordii HOM05D000283 ORTHO05D006673 1.5e-208 731.1 1395 39.7
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 1.2e-205 721.5 1536 36.6
Thecc.10G063100 Theobroma cacao HOM05D000283 ORTHO05D006673 7.3e-203 712.2 1296 39.9
Ciclev10033332m.g Citrus clementina HOM05D000283 ORTHO05D006673 1.1e-201 708.4 1378 39.6
Gohir.A05G352800 Gossypium hirsutum HOM05D000283 ORTHO05D006673 1.7e-188 664.5 1310 38.7
arahy.Tifrunner.gnm1.ann1.SA4FWZ Arachis hypogaea HOM05D000283 ORTHO05D006673 1.5e-184 651.4 1432 38.2
Gohir.D04G060201 Gossypium hirsutum HOM05D000283 ORTHO05D006673 1.5e-184 651.4 1309 38.1
COL.COLO4_29238 Corchorus olitorius HOM05D000283 ORTHO05D006673 2.0e-184 651.0 1431 36.5
arahy.Tifrunner.gnm1.ann1.U4C8JV Arachis hypogaea HOM05D000283 ORTHO05D006673 7.6e-184 649.0 1429 38.4
Prupe.2G224500 Prunus persica HOM05D000283 ORTHO05D006673 9.3e-182 642.1 1395 38.4
Hma1.2p1_0348F.1_g131680 Hydrangea macrophylla HOM05D000283 ORTHO05D006673 4.3e-179 633.3 1379 38.7
Glyma.20G242400 Glycine max HOM05D000283 ORTHO05D006673 2.7e-173 614.0 1442 36.1
Duzib106G1116 Durio zibethinus HOM05D000283 ORTHO05D006673 8.2e-170 602.4 1487 34.4
Glyma.10G292400 Glycine max HOM05D000283 ORTHO05D006673 3.1e-169 600.5 1433 36.3
Phvul.007G007900 Phaseolus vulgaris HOM05D000283 ORTHO05D006673 9.3e-166 589.0 1437 35.6
RcHm_v2.0_Chr1g0365001 Rosa chinensis HOM05D000283 ORTHO05D006673 6.1e-157 559.7 1380 37.3
Rhsim09G0155800 Rhododendron simsii HOM05D000283 ORTHO05D006673 5.1e-156 556.6 1407 36.0
VMungo0720G0439 Vigna mungo HOM05D000283 ORTHO05D006673 8.8e-156 555.8 1447 34.7
Psat6g238520 Pisum sativum HOM05D000283 ORTHO05D006673 2.0e-152 544.7 1453 35.3
TPR.G10427 Trifolium pratense HOM05D000283 ORTHO05D006673 2.6e-152 544.3 1444 35.3
Medtr1g115950 Medicago truncatula HOM05D000283 ORTHO05D006673 3.4e-152 543.9 1454 35.4
MD07G1184600 Malus domestica HOM05D000283 ORTHO05D006673 3.6e-149 533.9 1340 36.8
MD01G1117200 Malus domestica HOM05D000283 ORTHO05D006673 2.6e-147 527.7 1381 35.4
TAR633G0056 Trochodendron aralioides HOM05D000283 ORTHO05D006673 1.1e-145 522.3 1400 32.8
TAR636G0162 Trochodendron aralioides HOM05D000283 ORTHO05D006673 7.7e-144 516.2 1389 32.8
FvH4_7g20760 Fragaria vesca HOM05D000283 ORTHO05D006673 1.8e-140 505.0 1374 34.1
FAN06G2682 Fragaria x ananassa HOM05D000283 ORTHO05D006673 4.4e-139 500.4 1373 34.0
Ca_11324_v3 Cicer arietinum L. HOM05D000283 ORTHO05D006673 1.3e-138 498.8 1137 37.6
FAN06G0550 Fragaria x ananassa HOM05D000283 ORTHO05D006673 2.2e-138 498.0 1379 33.9
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 1.1e-137 495.7 1381 34.3
Lalb_Chr02g0143851 Lupinus albus HOM05D000283 ORTHO05D006673 1.8e-137 495.0 1396 33.6
FAN03G1488 Fragaria x ananassa HOM05D000283 ORTHO05D006673 2.4e-137 494.6 1383 33.8
Lj8A92T85 Lonicera japonica HOM05D000283 ORTHO05D006673 1.3e-135 488.8 1399 34.5
Lj5g0015824 Lotus japonicus HOM05D000283 ORTHO05D006673 1.5e-131 475.3 1474 34.1
CANSAT56G3782 Cannabis sativa HOM05D000283 ORTHO05D006673 2.7e-125 454.5 1398 32.9
Nn2g11490 Nelumbo nucifera HOM05D000283 ORTHO05D006673 6.8e-124 449.9 1328 32.8
Peaxi162Scf00135g00027 Petunia axillaris HOM05D000283 ORTHO05D006673 2.0e-115 421.8 1343 31.2
MSTRG.8954 Avicennia marina HOM05D000283 ORTHO05D006673 3.4e-107 394.4 1389 28.7
ClCG09G020310 Citrullus lanatus HOM05D000283 ORTHO05D006673 4.4e-107 394.0 1428 29.7
SalBow6G2235 Salvia bowleyana HOM05D000283 ORTHO05D006673 1.3e-106 392.5 1378 30.8
Cc02_g08660 Coffea canephora HOM05D000283 ORTHO05D006673 3.7e-106 391.0 1330 32.5
Eucgr.G02778 Eucalyptus grandis HOM05D000283 ORTHO05D006673 7.0e-105 386.7 1434 30.4
Lalb_Chr02g0143831 Lupinus albus HOM05D000283 ORTHO05D006673 1.4e-100 372.5 737 41.4
Aqoxy2G01934 Aquilegia oxysepala HOM05D000283 ORTHO05D006673 2.3e-100 371.7 1406 28.8
Migut.F00680 Erythranthe guttata HOM05D000283 ORTHO05D006673 3.4e-99 367.9 1375 31.6
Nitab4.5_0007221g0010 Nicotiana tabacum HOM05D000283 ORTHO05D006673 1.3e-95 355.9 1342 29.7
GSVIVG01032629001 Vitis vinifera HOM05D000283 ORTHO05D006673 6.6e-95 353.6 552 43.8
MSTRG.27328 Avicennia marina HOM05D000283 ORTHO05D006673 3.3e-94 351.3 1387 29.5
Nitab4.5_0006737g0060 Nicotiana tabacum HOM05D000283 ORTHO05D006673 1.2e-93 349.4 1342 29.7
Sopen04g005360 Solanum pennellii HOM05D000283 ORTHO05D006673 2.1e-85 322.0 1381 28.7
PGSC0003DMG400011483 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.1e-84 319.7 1382 28.6
THA.LOC104799366 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 1.0e-71 276.6 1434 27.5
Cpa.g.sc1.302 Carica papaya HOM05D000283 ORTHO05D006673 2.3e-71 275.4 291 51.5
Cpa.g.sc1.301 Carica papaya HOM05D000283 ORTHO05D006673 1.6e-69 269.2 928 31.0
Solyc04g010185.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 4.5e-67 261.2 941 29.6
Haze_16971 Corylus avellana HOM05D000283 ORTHO05D006673 7.6e-67 260.4 992 28.9
Oeu025162.3 Olea europaea HOM05D000283 ORTHO05D006673 1.5e-62 246.1 1241 26.2
DCAR_010662 Daucus carota HOM05D000283 ORTHO05D006673 2.5e-62 245.4 1403 25.9
PSO782G0271 Papaver somniferum HOM05D000283 ORTHO05D006673 4.3e-62 244.6 539 38.2
PGSC0003DMG400011491 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.8e-60 239.2 1057 28.0
PSO478G2008 Papaver somniferum HOM05D000283 ORTHO05D006673 1.2e-59 236.5 565 36.5
ClCG09G020330 Citrullus lanatus HOM05D000283 ORTHO05D006673 2.6e-59 235.3 684 32.7
THA.LOC104809887 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 6.4e-58 230.7 1242 27.7
MELO3C025488.2 Cucumis melo HOM05D000283 ORTHO05D006673 9.3e-49 200.3 688 30.8
MELO3C025491.2 Cucumis melo HOM05D000283 ORTHO05D006673 6.0e-48 197.6 679 30.5
DCAR_020267 Daucus carota HOM05D000457 ORTHO05D000560 3.0e-47 195.3 1129 27.8
Sed0006338 Sechium edule HOM05D000283 ORTHO05D006673 1.6e-45 189.5 700 31.0
Sed0026677 Sechium edule HOM05D000283 ORTHO05D006673 2.4e-44 185.7 691 31.3
CsaV3_5G026060 Cucumis sativus L. HOM05D000283 ORTHO05D006673 1.5e-43 183.0 717 30.0
AL6G24200 Arabidopsis lyrata HOM05D010678 ORTHO05D006673 3.4e-43 181.8 1357 25.8
Thhalv10012490m.g Eutrema salsugineum HOM05D010678 ORTHO05D006673 3.8e-42 178.3 1226 25.8
Sopen04g005270 Solanum pennellii HOM05D000283 ORTHO05D006673 6.5e-42 177.6 1105 26.0
AT5G13590 Arabidopsis thaliana HOM05D010678 ORTHO05D006673 1.1e-38 166.8 1339 26.0
CsaV3_5G026100 Cucumis sativus L. HOM05D000283 ORTHO05D006673 2.5e-38 165.6 394 33.8
CDE07G1705 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 4.3e-38 164.9 1404 23.6
Actinidia29198 Actinidia chinensis HOM05D000283 ORTHO05D006673 7.4e-38 164.1 686 29.2
Sp6g30440 Schrenkiella parvula HOM05D010678 ORTHO05D006673 2.2e-37 162.5 1287 25.2
Carub.0006s1175 Capsella rubella HOM05D010678 ORTHO05D006673 2.2e-34 152.5 1356 25.3
CARHR199850 Cardamine hirsuta HOM05D010678 ORTHO05D006673 8.8e-31 140.6 1346 25.6
PGSC0003DMG400011472 Solanum tuberosum HOM05D000283 ORTHO05D006673 8.8e-31 140.6 314 32.8
MELO3C025492.2 Cucumis melo HOM05D000283 ORTHO05D006673 2.0e-30 139.4 656 26.8
ATR0681G260 Amborella trichopoda HOM05D000283 ORTHO05D006673 9.1e-28 130.6 878 27.0
SGA_v2.0_scaffold60G20995 Striga asiatica HOM05D000283 ORTHO05D006673 4.5e-27 128.3 1382 25.9
CDE04G2023 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 7.7e-27 127.5 1369 22.9
BcaNung01143 Brassica carinata HOM05D010678 ORTHO05D006673 7.4e-22 110.9 468 28.6
BolC2t06571H Brassica oleracea HOM05D010678 ORTHO05D006673 4.8e-21 108.2 533 28.1
Solyc04g010155.2 Solanum lycopersicum HOM05D000283 ORTHO05D006673 5.3e-20 104.8 219 38.4
BraA02t05176Z Brassica rapa HOM05D010678 ORTHO05D006673 9.1e-20 104.0 529 27.0
A02p02040 Brassica napus HOM05D010678 ORTHO05D006673 2.6e-19 102.4 519 27.7
C02p06270 Brassica napus HOM05D010678 ORTHO05D006673 2.6e-19 102.4 1322 21.6
Sopen04g005310 Solanum pennellii HOM05D000283 ORTHO05D006673 7.2e-17 94.4 372 29.6
Sopen04g005330 Solanum pennellii HOM05D000283 ORTHO05D006673 1.4e-15 90.1 364 28.8
BcaC04g19099 Brassica carinata HOM05D010678 ORTHO05D006673 3.0e-15 89.0 482 27.8
BolC9t59195H Brassica oleracea HOM05D010678 ORTHO05D006673 3.0e-15 89.0 482 27.8
C09p63510 Brassica napus HOM05D010678 ORTHO05D006673 3.7e-13 82.0 496 26.8
BraA10t44531Z Brassica rapa HOM05D010678 ORTHO05D006673 7.0e-12 77.8 566 26.3
A10p24680 Brassica napus HOM05D010678 ORTHO05D006673 9.1e-12 77.4 551 26.1
PGSC0003DMG400011503 Solanum tuberosum HOM05D000283 ORTHO05D006673 2.0e-11 76.3 184 37.5
PGSC0003DMG400042471 Solanum tuberosum HOM05D000283 ORTHO05D006673 2.9e-10 72.4 230 33.0
BcaNung01899 Brassica carinata HOM05D010678 ORTHO05D006673 8.5e-10 70.9 1371 21.6
Sopen03g020140 Solanum pennellii HOM05D000002 ORTHO05D000001 1.1e-09 70.5 142 38.7
Psat3g141280 Pisum sativum HOM05D000846 ORTHO05D001340 3.2e-09 68.9 157 34.4
Psat3g141160 Pisum sativum HOM05D000846 ORTHO05D001340 4.2e-09 68.6 157 33.8
PSO478G1013 Papaver somniferum HOM05D006627 ORTHO05D007753 2.1e-08 66.2 828 23.2
PSO782G1175 Papaver somniferum HOM05D006627 ORTHO05D007753 6.1e-08 64.7 819 23.1
COL.COLO4_31476 Corchorus olitorius HOM05D000283 ORTHO05D006673 1.8e-07 63.2 46 69.6
Oeu025164.1 Olea europaea HOM05D000283 ORTHO05D010811 5.2e-07 61.6 310 26.8
COL.COLO4_10625 Corchorus olitorius HOM05D000283 ORTHO05D006673 1.2e-06 60.5 43 69.8
COL.COLO4_26050 Corchorus olitorius HOM05D000283 ORTHO05D006673 1.2e-06 60.5 43 69.8
BcaNung06336 Brassica carinata HOM05D010678 ORTHO05D006673 1.5e-06 60.1 136 37.5
Solyc04g010130.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 2.6e-06 59.3 89 39.3


User provided reference genes

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