Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0032300 Salix brachista HOM05D003984 ORTHO05D004740 1.0e-151 540.0 272 100.0
Potri.008G046000 Populus trichocarpa HOM05D003984 ORTHO05D004740 6.2e-141 504.2 272 94.5
Manes.10G040500 Manihot esculenta HOM05D003984 ORTHO05D004740 5.8e-131 471.1 272 87.9
Potri.010G215500 Populus trichocarpa HOM05D003984 ORTHO05D004740 2.3e-127 459.1 274 88.0
Manes.07G104700 Manihot esculenta HOM05D003984 ORTHO05D004740 3.9e-127 458.4 272 85.3
QL08p057270 Quercus lobata HOM05D003984 ORTHO05D004740 1.9e-126 456.1 274 86.5
MD01G1114200 Malus domestica HOM05D003984 ORTHO05D004740 3.3e-126 455.3 275 85.8
MD07G1182100 Malus domestica HOM05D003984 ORTHO05D004740 5.6e-126 454.5 275 86.2
COL.COLO4_23777 Corchorus olitorius HOM05D003984 ORTHO05D004740 9.6e-126 453.8 273 85.0
Prupe.2G220800 Prunus persica HOM05D003984 ORTHO05D004740 6.2e-125 451.1 275 84.7
Thecc.10G065000 Theobroma cacao HOM05D003984 ORTHO05D004740 2.4e-124 449.1 273 84.6
Cfa001574 Carpinus fangiana HOM05D003984 ORTHO05D004740 6.9e-124 447.6 275 85.1
CiPaw.01G278000 Carya illinoinensis HOM05D003984 ORTHO05D004740 6.9e-124 447.6 275 84.4
Atru.chr12.610 Acer truncatum HOM05D003984 ORTHO05D004740 1.2e-123 446.8 273 84.2
RcHm_v2.0_Chr1g0364411 Rosa chinensis HOM05D003984 ORTHO05D004740 2.0e-123 446.0 275 83.6
ClCG09G020350 Citrullus lanatus HOM05D003984 ORTHO05D004740 3.4e-123 445.3 275 84.7
Dinv11820 Davidia involucrata HOM05D003984 ORTHO05D004740 7.6e-123 444.1 275 83.3
Ciclev10032445m.g Citrus clementina HOM05D003984 ORTHO05D004740 3.8e-122 441.8 274 83.9
Dinv31376 Davidia involucrata HOM05D003984 ORTHO05D004740 4.9e-122 441.4 275 82.9
CiPaw.02G177500 Carya illinoinensis HOM05D003984 ORTHO05D004740 2.5e-121 439.1 276 84.1
CSS0011111 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 3.2e-121 438.7 274 83.6
CSS0036351 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 3.2e-121 438.7 275 81.5
CANSAT56G1305 Cannabis sativa HOM05D003984 ORTHO05D004740 5.5e-121 438.0 275 81.8
SGA_v2.0_scaffold62G21447 Striga asiatica HOM05D003984 ORTHO05D004740 5.5e-121 438.0 267 83.9
Duzib114G0791 Durio zibethinus HOM05D003984 ORTHO05D004740 9.3e-121 437.2 273 84.2
GSVIVG01032647001 Vitis vinifera HOM05D003984 ORTHO05D004740 9.3e-121 437.2 275 83.6
CSS0025505 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.2e-120 436.8 275 81.1
CsaV3_5G026080 Cucumis sativus L. HOM05D003984 ORTHO05D004740 1.2e-120 436.8 275 82.5
Peaxi162Scf01024g00120 Petunia axillaris HOM05D003984 ORTHO05D004740 1.6e-120 436.4 271 82.7
TWI15G0393 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 1.3e-119 433.3 271 83.8
Duzib128G0096 Durio zibethinus HOM05D003984 ORTHO05D004740 3.0e-119 432.2 274 83.6
Nitab4.5_0000830g0100 Nicotiana tabacum HOM05D003984 ORTHO05D004740 3.0e-119 432.2 272 81.6
MSTRG.27450 Avicennia marina HOM05D003984 ORTHO05D004740 1.5e-118 429.9 275 80.4
Nitab4.5_0001248g0030 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.9e-118 429.5 272 81.2
Cc09_g02350 Coffea canephora HOM05D003984 ORTHO05D004740 3.3e-118 428.7 272 81.2
Peaxi162Scf00195g00824 Petunia axillaris HOM05D003984 ORTHO05D004740 4.3e-118 428.3 271 81.5
Sed0003028 Sechium edule HOM05D003984 ORTHO05D004740 4.8e-117 424.9 275 80.7
AUR62036011 Chenopodium quinoa HOM05D003984 ORTHO05D004740 6.3e-117 424.5 274 81.4
FAN10G1795 Fragaria x ananassa HOM05D003984 ORTHO05D004740 6.3e-117 424.5 275 80.7
Medtr1g116240 Medicago truncatula HOM05D003984 ORTHO05D004740 6.3e-117 424.5 275 81.1
Hund22456 Selenicereus undatus HOM05D003984 ORTHO05D004740 6.3e-117 424.5 275 82.2
Lj5g0020432 Lotus japonicus HOM05D003984 ORTHO05D004740 8.2e-117 424.1 272 82.4
FAN06G2832 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.4e-116 423.3 275 80.4
FvH4_7g20520 Fragaria vesca HOM05D003984 ORTHO05D004740 1.8e-116 422.9 275 80.0
Actinidia13840 Actinidia chinensis HOM05D003984 ORTHO05D004740 2.4e-116 422.5 270 81.9
Solyc04g049710.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 2.4e-116 422.5 272 79.8
Gohir.D10G216200 Gossypium hirsutum HOM05D003984 ORTHO05D004740 3.1e-116 422.2 273 80.2
Gorai.012G092700 Gossypium raimondii HOM05D003984 ORTHO05D004740 3.1e-116 422.2 273 80.2
FAN03G0045 Fragaria x ananassa HOM05D003984 ORTHO05D004740 4.1e-116 421.8 275 79.6
Gohir.A05G343700 Gossypium hirsutum HOM05D003984 ORTHO05D004740 4.1e-116 421.8 273 79.9
Sopen04g019960 Solanum pennellii HOM05D003984 ORTHO05D004740 4.1e-116 421.8 272 79.8
Gorai.011G241800 Gossypium raimondii HOM05D003984 ORTHO05D004740 5.3e-116 421.4 273 80.2
Migut.F02015 Erythranthe guttata HOM05D003984 ORTHO05D004740 2.0e-115 419.5 267 80.9
Lalb_Chr21g0307521 Lupinus albus HOM05D003984 ORTHO05D004740 2.6e-115 419.1 282 80.1
Glyma.10G294300 Glycine max HOM05D003984 ORTHO05D004740 3.4e-115 418.7 275 80.4
Lj8A94T49 Lonicera japonica HOM05D003984 ORTHO05D004740 3.4e-115 418.7 276 80.1
Oeu055063.1 Olea europaea HOM05D003984 ORTHO05D004740 3.4e-115 418.7 275 78.9
TPR.G10390 Trifolium pratense HOM05D003984 ORTHO05D004740 5.9e-115 417.9 276 80.8
EL10Ac2g03538 Beta vulgaris HOM05D003984 ORTHO05D004740 1.0e-114 417.2 275 80.4
CSS0002243 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.0e-114 417.2 262 84.4
Nn2g10608 Nelumbo nucifera HOM05D003984 ORTHO05D004740 1.0e-114 417.2 277 77.6
VMungo0720G0811 Vigna mungo HOM05D003984 ORTHO05D004740 1.0e-114 417.2 274 80.7
Lalb_Chr06g0164371 Lupinus albus HOM05D003984 ORTHO05D004740 3.8e-114 415.2 275 80.7
PGR044G2197 Punica granatum HOM05D003984 ORTHO05D004740 3.8e-114 415.2 268 82.1
Sabra10G0166500 Salix brachista HOM05D003984 ORTHO05D004740 5.0e-114 414.8 289 77.9
Gohir.A10G208060 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.1e-113 413.7 273 79.5
Lalb_Chr02g0144171 Lupinus albus HOM05D003984 ORTHO05D004740 1.1e-113 413.7 278 80.2
TAR633G2252 Trochodendron aralioides HOM05D003984 ORTHO05D004740 1.1e-113 413.7 275 78.2
Rhsim09G0154900 Rhododendron simsii HOM05D003984 ORTHO05D004740 1.4e-113 413.3 258 83.7
Ah.10g033080 Amaranthus hybridus HOM05D003984 ORTHO05D004740 2.5e-113 412.5 284 77.5
TWI63G0288 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 3.2e-113 412.1 261 82.8
PGSC0003DMG400032551 Solanum tuberosum HOM05D003984 ORTHO05D004740 7.2e-113 411.0 270 78.5
Phvul.007G005800 Phaseolus vulgaris HOM05D003984 ORTHO05D004740 9.3e-113 410.6 276 79.0
Glyma.20G244200 Glycine max HOM05D003984 ORTHO05D004740 1.6e-112 409.8 275 79.6
CAN.G186.31 Capsicum annuum HOM05D003984 ORTHO05D004740 2.1e-112 409.5 270 77.8
Psat6g240040 Pisum sativum HOM05D003984 ORTHO05D004740 2.1e-112 409.5 273 79.5
arahy.Tifrunner.gnm1.ann1.V3HSKN Arachis hypogaea HOM05D003984 ORTHO05D004740 2.7e-112 409.1 273 79.9
Nitab4.5_0000691g0240 Nicotiana tabacum HOM05D003984 ORTHO05D004740 4.6e-112 408.3 272 78.3
AUR62041612 Chenopodium quinoa HOM05D003984 ORTHO05D004740 1.3e-111 406.8 301 73.4
DCAR_019150 Daucus carota HOM05D003984 ORTHO05D004740 1.3e-111 406.8 274 75.9
Eucgr.J01137 Eucalyptus grandis HOM05D003984 ORTHO05D004740 1.3e-111 406.8 273 77.7
Solyc04g009550.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 3.9e-111 405.2 270 77.0
SGA_v2.0_scaffold329G48849 Striga asiatica HOM05D003984 ORTHO05D004740 1.1e-110 403.7 269 79.2
Nn2g12956 Nelumbo nucifera HOM05D003984 ORTHO05D004740 4.3e-110 401.7 276 77.5
Oeu057248.1 Olea europaea HOM05D003984 ORTHO05D004740 3.7e-109 398.7 262 78.6
Sed0000226 Sechium edule HOM05D003984 ORTHO05D004740 4.8e-109 398.3 272 76.5
THA.LOC104825886 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 6.3e-109 397.9 270 76.7
Nitab4.5_0004104g0120 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.4e-108 396.7 258 79.8
arahy.Tifrunner.gnm1.ann1.B234YK Arachis hypogaea HOM05D003984 ORTHO05D004740 6.9e-108 394.4 318 68.9
Migut.F01787 Erythranthe guttata HOM05D003984 ORTHO05D004740 2.0e-107 392.9 268 76.5
DCAR_015251 Daucus carota HOM05D003984 ORTHO05D004740 2.6e-107 392.5 258 78.7
Lj1A928T58 Lonicera japonica HOM05D003984 ORTHO05D004740 3.4e-107 392.1 316 68.4
TAR623G0696 Trochodendron aralioides HOM05D003984 ORTHO05D004740 7.7e-107 391.0 259 78.4
PSO384G2137 Papaver somniferum HOM05D003984 ORTHO05D004740 2.2e-106 389.4 273 75.5
HanXRQChr12g0367731 Helianthus annuus HOM05D003984 ORTHO05D004740 2.9e-106 389.0 275 75.3
Haze_16954 Corylus avellana HOM05D003984 ORTHO05D004740 3.8e-106 388.7 246 81.7
ECA238G2056 Erigeron canadensis HOM05D003984 ORTHO05D004740 3.8e-106 388.7 267 76.8
THA.LOC104810167 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 4.2e-105 385.2 256 78.5
PSO339G0239 Papaver somniferum HOM05D003984 ORTHO05D004740 5.5e-105 384.8 273 74.4
THA.LOC104824242 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 7.2e-105 384.4 267 76.4
Aqoxy4G03159 Aquilegia oxysepala HOM05D003984 ORTHO05D004740 1.0e-103 380.6 288 71.9
HanXRQChr07g0200921 Helianthus annuus HOM05D003984 ORTHO05D004740 5.7e-102 374.8 265 75.8
SalBow3G2899 Salvia bowleyana HOM05D003984 ORTHO05D004740 1.7e-101 373.2 274 73.7
CDE09G0608 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 4.8e-101 371.7 276 72.8
Lsat_1_v5_gn_2_115481 Lactuca sativa HOM05D003984 ORTHO05D004740 2.4e-100 369.4 258 77.1
ATR0594G132 Amborella trichopoda HOM05D003984 ORTHO05D004740 6.9e-100 367.9 278 71.2
Aa31sc33G70 Aethionema arabicum HOM05D003984 ORTHO05D004740 1.5e-99 366.7 272 73.2
Lsat_1_v5_gn_8_21240 Lactuca sativa HOM05D003984 ORTHO05D004740 1.5e-99 366.7 276 71.7
PSO339G2647 Papaver somniferum HOM05D003984 ORTHO05D004740 2.6e-99 365.9 277 71.5
Ca_11380_v3 Cicer arietinum L. HOM05D003984 ORTHO05D004740 1.4e-97 360.1 283 71.0
AL5G36110 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 2.5e-97 359.4 269 71.4
AL5G36120 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 2.5e-97 359.4 268 69.8
AT3G55000 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 2.1e-96 356.3 269 71.4
Carub.0005s2162 Capsella rubella HOM05D003984 ORTHO05D004740 2.1e-96 356.3 270 71.1
Os11g0102600 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 2.1e-96 356.3 265 71.3
Os12g0102200 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 2.1e-96 356.3 265 71.3
HPP92_017944 Vanilla planifolia HOM05D003984 ORTHO05D004740 3.6e-96 355.5 274 70.1
Gohir.D04G082100 Gossypium hirsutum HOM05D003984 ORTHO05D004740 4.7e-96 355.1 233 79.8
HanXRQChr14g0460861 Helianthus annuus HOM05D003984 ORTHO05D004740 7.9e-96 354.4 265 73.6
Thhalv10010647m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 1.0e-95 354.0 269 70.6
CARHR165000 Cardamine hirsuta HOM05D003984 ORTHO05D004740 1.8e-95 353.2 268 71.6
BcaB02g07705 Brassica carinata HOM05D003984 ORTHO05D004740 3.9e-95 352.1 269 70.3
BcaC08g44716 Brassica carinata HOM05D003984 ORTHO05D004740 6.7e-95 351.3 270 69.6
HPP92_019786 Vanilla planifolia HOM05D003984 ORTHO05D004740 6.7e-95 351.3 272 68.8
A07p22390 Brassica napus HOM05D003984 ORTHO05D004740 8.8e-95 350.9 269 69.9
C06p22550 Brassica napus HOM05D003984 ORTHO05D004740 8.8e-95 350.9 270 69.6
AT3G55005 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 1.5e-94 350.1 266 70.3
Sp5g07420 Schrenkiella parvula HOM05D003984 ORTHO05D004740 2.0e-94 349.7 269 69.5
Zm00001eb094350 Zea mays HOM05D003984 ORTHO05D004740 2.0e-94 349.7 265 70.9
Lj1C926T5 Lonicera japonica HOM05D003984 ORTHO05D004740 2.6e-94 349.4 281 68.0
BolC6t37445H Brassica oleracea HOM05D003984 ORTHO05D004740 5.7e-94 348.2 269 69.1
Sp5g07430 Schrenkiella parvula HOM05D003984 ORTHO05D004740 1.3e-93 347.1 268 70.5
BraA07t29915Z Brassica rapa HOM05D003984 ORTHO05D004740 1.8e-92 343.2 288 65.3
Zm00001eb163130 Zea mays HOM05D003984 ORTHO05D004740 3.1e-92 342.4 265 70.9
Carub.0005s2163 Capsella rubella HOM05D003984 ORTHO05D004740 1.6e-91 340.1 268 68.3
CDE02G0952 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 3.5e-91 339.0 261 71.3
unitig_0.g190 Utricularia gibba HOM05D003984 ORTHO05D004740 1.3e-90 337.0 243 74.5
Sc20g0002240 Simmondsia chinensis HOM05D003984 ORTHO05D004740 1.5e-89 333.6 269 69.1
MELO3C025490.2 Cucumis melo HOM05D003984 ORTHO05D004740 8.0e-88 327.8 218 81.2
CARHR165010 Cardamine hirsuta HOM05D003984 ORTHO05D004740 2.6e-86 322.8 266 65.8
MSTRG.9196 Avicennia marina HOM05D003984 ORTHO05D004740 9.7e-86 320.9 207 81.6
BraA09t40255Z Brassica rapa HOM05D003984 ORTHO05D004740 5.3e-84 315.1 269 63.6
A09p48020 Brassica napus HOM05D003984 ORTHO05D004740 1.2e-83 313.9 268 63.4
C08p30240 Brassica napus HOM05D003984 ORTHO05D004740 2.7e-83 312.8 272 63.2
Sopen04g004710 Solanum pennellii HOM05D003984 ORTHO05D004740 2.2e-82 309.7 202 79.7
BcaNung04652 Brassica carinata HOM05D003984 ORTHO05D004740 3.8e-82 308.9 271 62.4
Thhalv10010676m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 1.2e-80 303.9 248 69.0
BcaB01g00136 Brassica carinata HOM05D003984 ORTHO05D004740 3.6e-80 302.4 268 61.9
BolC8t50631H Brassica oleracea HOM05D003984 ORTHO05D004740 4.0e-79 298.9 267 60.3
Sc20g0002230 Simmondsia chinensis HOM05D003984 ORTHO05D004740 2.3e-71 273.1 197 74.6
FAN01G2342 Fragaria x ananassa HOM05D003984 ORTHO05D004740 3.4e-70 269.2 152 89.5
FAN06G1180 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.1e-65 254.2 174 75.3
AagrBONN_evm.TU.Sc2ySwM_344.1695 Anthoceros agrestis HOM05D003984 ORTHO05D004740 1.8e-39 167.2 222 46.8
SEGI_35779 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 5.8e-38 162.2 243 42.8
Mapoly0066s0078 Marchantia polymorpha HOM05D003984 ORTHO05D004740 6.4e-37 158.7 154 55.8
Cpa.g.sc1.281 Carica papaya HOM05D003984 ORTHO05D004740 3.2e-36 156.4 115 71.3
Pp3c14_5580 Physcomitrium patens HOM05D003984 ORTHO05D004740 5.4e-36 155.6 160 51.2
Actinidia29191 Actinidia chinensis HOM05D003984 ORTHO05D004740 5.1e-34 149.1 121 68.6
FAN06G2469 Fragaria x ananassa HOM05D003984 ORTHO05D004740 2.1e-32 143.7 92 81.5
TAR624G0784 Trochodendron aralioides HOM05D003984 ORTHO05D004740 4.2e-28 129.4 101 67.3
SEGI_13922 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 6.6e-26 122.1 73 82.2
CBR_g37750 Chara braunii HOM05D000019 ORTHO05D000002 7.3e-25 118.6 170 44.1
SMO356G0399 Selaginella moellendorffii HOM05D003984 ORTHO05D004740 3.0e-18 96.7 162 40.1
AUR62035988 Chenopodium quinoa HOM05D003984 ORTHO05D004740 3.6e-16 89.7 92 53.3
SHI42769 Sapria himalayana HOM05D003984 ORTHO05D004740 1.1e-15 88.2 122 49.2
CBR_g10977 Chara braunii HOM05D003984 ORTHO05D004740 1.4e-15 87.8 137 40.1
HanXRQChr17g0557371 Helianthus annuus HOM05D000549 ORTHO05D004740 1.9e-12 77.4 41 82.9
CSS0046661 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 2.4e-12 77.0 59 66.1
RcHm_v2.0_Chr2g0140211 Rosa chinensis HOM05D003984 ORTHO05D004740 1.3e-10 71.2 43 72.1
Nn6g33815 Nelumbo nucifera HOM05D003984 ORTHO05D004740 2.3e-10 70.5 41 75.6
PRCOL_00000040 Prasinoderma coloniale HOM05D003984 ORTHO05D004740 5.6e-09 65.9 143 32.2
Sabra18G0026300 Salix brachista HOM05D002732 ORTHO05D002955 5.3e-07 59.3 32 93.8


User provided reference genes

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