Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0023600 Salix brachista HOM05D003976 ORTHO05D004711 0.0e+00 2305.8 1181 100.0
Potri.008G035300 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 1748.8 1119 84.3
Potri.010G227100 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 1664.8 1120 80.4
Sabra10G0175200 Salix brachista HOM05D003976 ORTHO05D004711 0.0e+00 1583.5 1155 76.3
TWI63G1397 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 1555.8 1128 74.6
Manes.01G054600 Manihot esculenta HOM05D003976 ORTHO05D004711 0.0e+00 1520.8 1124 73.7
TWI15G0187 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 1516.9 1133 73.9
RcHm_v2.0_Chr1g0362571 Rosa chinensis HOM05D003976 ORTHO05D004711 0.0e+00 1508.8 1137 72.4
GSVIVG01016219001 Vitis vinifera HOM05D003976 ORTHO05D004711 0.0e+00 1508.4 1143 71.8
MD07G1169800 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 1506.9 1211 69.3
Cfa001691 Carpinus fangiana HOM05D003976 ORTHO05D004711 0.0e+00 1503.4 1138 72.3
CANSAT56G1655 Cannabis sativa HOM05D003976 ORTHO05D004711 0.0e+00 1496.1 1127 72.0
Prupe.2G208700 Prunus persica HOM05D003976 ORTHO05D004711 0.0e+00 1491.1 1138 72.2
Dinv31232 Davidia involucrata HOM05D003976 ORTHO05D004711 0.0e+00 1487.2 1128 71.7
Lj5g0000763 Lotus japonicus HOM05D003976 ORTHO05D004711 0.0e+00 1487.2 1134 71.3
TAR633G0511 Trochodendron aralioides HOM05D003976 ORTHO05D004711 0.0e+00 1483.8 1130 71.9
Glyma.10G207900 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1475.7 1133 70.6
Thecc.10G083800 Theobroma cacao HOM05D003976 ORTHO05D004711 0.0e+00 1471.8 1128 71.8
FvH4_7g18760 Fragaria vesca HOM05D003976 ORTHO05D004711 0.0e+00 1471.1 1138 70.6
Lalb_Chr06g0170321 Lupinus albus HOM05D003976 ORTHO05D004711 0.0e+00 1468.4 1135 70.0
Duzib114G0598 Durio zibethinus HOM05D003976 ORTHO05D004711 0.0e+00 1468.0 1128 71.9
Atru.chr12.845 Acer truncatum HOM05D003976 ORTHO05D004711 0.0e+00 1465.3 1135 70.4
Glyma.20G182800 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1464.1 1144 69.9
MD01G1103100 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 1464.1 1137 71.2
CiPaw.01G268500 Carya illinoinensis HOM05D003976 ORTHO05D004711 0.0e+00 1463.4 1138 70.8
CSS0009675 Camellia sinensis var. sinensis HOM05D003976 ORTHO05D004711 0.0e+00 1458.0 1142 70.1
Ca_00795_v3 Cicer arietinum L. HOM05D003976 ORTHO05D004711 0.0e+00 1450.3 1134 69.8
Nn4g25176 Nelumbo nucifera HOM05D003976 ORTHO05D004711 0.0e+00 1449.9 1128 70.2
FAN03G2922 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1447.2 1138 69.9
Phvul.007G098800 Phaseolus vulgaris HOM05D003976 ORTHO05D004711 0.0e+00 1444.9 1133 69.7
Medtr8g104855 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 1443.3 1140 69.1
TPR.G32679 Trifolium pratense HOM05D003976 ORTHO05D004711 0.0e+00 1439.9 1132 69.9
Medtr5g017640 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 1439.5 1132 69.5
FAN06G0006 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1436.0 1138 69.4
Aqoxy1G01141 Aquilegia oxysepala HOM05D003976 ORTHO05D004711 0.0e+00 1434.5 1129 69.2
PGR044G0607 Punica granatum HOM05D003976 ORTHO05D004711 0.0e+00 1431.8 1143 68.9
VMungo0251G3371 Vigna mungo HOM05D003976 ORTHO05D004711 0.0e+00 1423.3 1123 69.5
Oeu007408.1 Olea europaea HOM05D003976 ORTHO05D004711 0.0e+00 1408.7 1128 68.4
Sopen11g004150 Solanum pennellii HOM05D003976 ORTHO05D004711 0.0e+00 1402.5 1126 68.1
Gohir.D04G001800 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1397.9 1126 68.8
Gohir.A05G414300 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1397.5 1126 68.7
Migut.F01955 Erythranthe guttata HOM05D003976 ORTHO05D004711 0.0e+00 1394.4 1143 67.4
Gorai.012G002900 Gossypium raimondii HOM05D003976 ORTHO05D004711 0.0e+00 1392.1 1126 68.6
Lj2C20G12 Lonicera japonica HOM05D003976 ORTHO05D004711 0.0e+00 1391.7 1135 66.6
Sed0018764 Sechium edule HOM05D003976 ORTHO05D004711 0.0e+00 1391.3 1128 67.3
Solyc11g008340.3 Solanum lycopersicum HOM05D003976 ORTHO05D004711 0.0e+00 1390.2 1126 67.9
Nitab4.5_0001450g0090 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 1389.4 1167 66.2
Sc06g0007810 Simmondsia chinensis HOM05D003976 ORTHO05D004711 0.0e+00 1389.0 1127 67.2
THA.LOC104826898 Tarenaya hassleriana HOM05D003976 ORTHO05D004711 0.0e+00 1382.5 1132 67.8
MELO3C019825.2 Cucumis melo HOM05D003976 ORTHO05D004711 0.0e+00 1369.0 1177 63.8
CsaV3_6G036710 Cucumis sativus L. HOM05D003976 ORTHO05D004711 0.0e+00 1365.5 1125 65.6
SalBow4G0398 Salvia bowleyana HOM05D003976 ORTHO05D004711 0.0e+00 1362.8 1155 65.5
PSO063G6915 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1362.1 1144 66.3
MSTRG.27486 Avicennia marina HOM05D003976 ORTHO05D004711 0.0e+00 1359.0 1102 67.2
PSO339G0981 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1356.3 1144 66.2
Haze_16845 Corylus avellana HOM05D003976 ORTHO05D004711 0.0e+00 1340.9 1164 65.5
Nitab4.5_0001659g0180 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 1339.7 1111 67.2
Sp3g08650 Schrenkiella parvula HOM05D003976 ORTHO05D004711 0.0e+00 1328.9 1134 64.9
CARHR084860 Cardamine hirsuta HOM05D003976 ORTHO05D004711 0.0e+00 1324.3 1126 65.1
DCAR_019085 Daucus carota HOM05D003976 ORTHO05D004711 0.0e+00 1316.6 1144 65.0
AT3G10380 Arabidopsis thaliana HOM05D003976 ORTHO05D004711 0.0e+00 1316.2 1126 65.2
Carub.0003s0956 Capsella rubella HOM05D003976 ORTHO05D004711 0.0e+00 1314.7 1133 64.3
Ciclev10030617m.g Citrus clementina HOM05D003976 ORTHO05D004711 0.0e+00 1311.6 1127 66.7
C05p57780 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1303.5 1150 63.6
BolC5t34435H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1303.1 1150 63.6
Psat7g009400 Pisum sativum HOM05D003976 ORTHO05D004711 0.0e+00 1303.1 1021 69.5
AL3G21710 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 0.0e+00 1301.6 1127 64.8
FAN01G1125 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1301.6 1124 65.2
A05p38770 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1300.0 1135 63.9
MBI18_g27471_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 0.0e+00 1295.4 1106 65.2
BolC1t05404H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1288.9 1168 62.4
BcaB04g21214 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1286.9 1134 63.0
ECA238G0457 Erigeron canadensis HOM05D003976 ORTHO05D004711 0.0e+00 1286.6 1136 63.4
Thhalv10019960m.g Eutrema salsugineum HOM05D003976 ORTHO05D004711 0.0e+00 1285.8 1132 63.6
BcaC09g48100 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1281.5 1126 63.5
BraA01t04258Z Brassica rapa HOM05D003976 ORTHO05D004711 0.0e+00 1281.2 1168 61.8
Oeu033874.1 Olea europaea HOM05D003976 ORTHO05D004711 0.0e+00 1277.3 1040 67.3
C03p44100 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1276.9 1147 62.3
Nn3g18724 Nelumbo nucifera HOM05D003976 ORTHO05D004711 0.0e+00 1276.5 1123 64.0
A01p41880 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1276.2 1105 64.3
BolC3t16685H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1276.2 1152 62.1
FAN10G1353 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1275.0 1113 64.8
ClCG08G007720 Citrullus lanatus HOM05D003976 ORTHO05D004711 0.0e+00 1271.1 1119 63.1
FAN06G1302 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1269.2 1141 63.3
Aa31LG3G2960 Aethionema arabicum HOM05D003976 ORTHO05D004711 0.0e+00 1264.2 1092 64.0
BraA03t12817Z Brassica rapa HOM05D003976 ORTHO05D004711 0.0e+00 1263.1 1146 62.0
A03p36500 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1260.4 1147 61.9
HanXRQChr05g0161261 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1254.2 1130 62.2
HanXRQChr14g0455711 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1251.1 1128 62.7
HanXRQChr14g0456581 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1251.1 1128 62.7
AUR62023345 Chenopodium quinoa HOM05D003976 ORTHO05D004711 0.0e+00 1243.0 1135 61.9
BcaC05g29471 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1237.6 1134 61.7
AUR62013811 Chenopodium quinoa HOM05D003976 ORTHO05D004711 0.0e+00 1226.8 1157 60.6
EL10Ac1g00696 Beta vulgaris HOM05D003976 ORTHO05D004711 0.0e+00 1208.7 1204 59.2
CDE10G1014 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 0.0e+00 1199.1 1120 60.1
FAN10G3044 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1196.4 1083 62.8
arahy.Tifrunner.gnm1.ann1.9SI57B Arachis hypogaea HOM05D003976 ORTHO05D004711 0.0e+00 1194.1 1077 63.0
Lsat_1_v5_gn_2_113061 Lactuca sativa HOM05D003976 ORTHO05D004711 0.0e+00 1184.9 1126 59.9
HPP92_022853 Vanilla planifolia HOM05D003976 ORTHO05D004711 0.0e+00 1171.0 1162 58.5
SEGI_27589 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 0.0e+00 1169.5 1107 58.1
Os08g0318500 Oryza sativa ssp. japonica HOM05D003976 ORTHO05D004711 0.0e+00 1165.2 1123 57.9
Eucgr.K02187 Eucalyptus grandis HOM05D003976 ORTHO05D004711 0.0e+00 1142.5 978 65.6
SGA_v2.0_scaffold100G29552 Striga asiatica HOM05D003976 ORTHO05D004711 0.0e+00 1139.4 1245 55.1
Zm00001eb330040 Zea mays HOM05D003976 ORTHO05D004711 0.0e+00 1138.3 1124 57.6
Hma1.2p1_0384F.1_g140840 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 0.0e+00 1108.6 785 75.5
unitig_46.g18603 Utricularia gibba HOM05D003976 ORTHO05D004711 6.3e-307 1057.7 1102 55.5
Gohir.D10G210600 Gossypium hirsutum HOM05D003976 ORTHO05D004711 4.9e-291 1005.0 935 62.0
QL08p054317 Quercus lobata HOM05D003976 ORTHO05D004711 6.4e-291 1004.6 789 69.8
ATR0730G009 Amborella trichopoda HOM05D003976 ORTHO05D004711 1.1e-290 1003.8 944 59.4
Gorai.011G236100 Gossypium raimondii HOM05D003976 ORTHO05D004711 1.9e-287 993.0 983 59.2
Pp3c16_24260 Physcomitrium patens HOM05D003976 ORTHO05D004711 4.9e-259 898.7 1129 47.5
Mapoly0170s0008 Marchantia polymorpha HOM05D003976 ORTHO05D004711 4.3e-255 885.6 1108 46.8
Pp3c3_21120 Physcomitrium patens HOM05D003976 ORTHO05D004711 1.2e-233 814.3 1099 45.1
CiPaw.02G172200 Carya illinoinensis HOM05D003976 ORTHO05D004711 3.2e-226 789.6 655 67.9
Actinidia18607 Actinidia chinensis HOM05D003976 ORTHO05D004711 5.5e-226 788.9 862 55.8
Gohir.A10G202400 Gossypium hirsutum HOM05D003976 ORTHO05D004711 3.6e-225 786.2 790 58.9
Pp3c12_15420 Physcomitrium patens HOM05D003976 ORTHO05D004711 1.9e-223 780.4 1093 43.2
COL.COLO4_34215 Corchorus olitorius HOM05D003976 ORTHO05D004711 2.2e-214 750.4 628 67.0
SMO172G0221 Selaginella moellendorffii HOM05D003976 ORTHO05D004711 6.3e-214 748.8 1083 42.8
arahy.Tifrunner.gnm1.ann1.WBL645 Arachis hypogaea HOM05D003976 ORTHO05D004711 2.0e-204 717.2 646 62.7
BraA05t22668Z Brassica rapa HOM05D003976 ORTHO05D004711 1.1e-202 711.4 628 63.4
Peaxi162Scf00145g01214 Petunia axillaris HOM05D003976 ORTHO05D004711 1.8e-192 677.6 627 62.7
vmacro00386 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 5.2e-184 649.4 877 48.0
Peaxi162Scf00145g01215 Petunia axillaris HOM05D003976 ORTHO05D004711 1.5e-183 647.9 500 68.8
Hund17145 Selenicereus undatus HOM05D003976 ORTHO05D004711 1.9e-178 630.9 715 52.4
COL.COLO4_34214 Corchorus olitorius HOM05D003976 ORTHO05D004711 1.1e-173 615.1 493 69.6
AagrBONN_evm.TU.Sc2ySwM_228.4637 Anthoceros agrestis HOM05D003976 ORTHO05D004711 7.5e-167 592.4 869 43.3
CBR_g30687 Chara braunii HOM05D003976 ORTHO05D004711 2.9e-158 563.9 1244 33.1
CAN.G321.62 Capsicum annuum HOM05D003976 ORTHO05D004711 3.9e-155 553.5 415 71.6
CiPaw.02G172100 Carya illinoinensis HOM05D003976 ORTHO05D004711 1.7e-147 528.1 399 71.7
BraA05t22669Z Brassica rapa HOM05D003976 ORTHO05D004711 3.3e-146 523.9 452 64.4
CDE10G0060 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 9.6e-122 442.6 428 57.0
Cpa.g.sc53.134 Carica papaya HOM05D003976 ORTHO05D004711 1.8e-112 411.8 389 62.7
Lalb_Chr21g0313681 Lupinus albus HOM05D003976 ORTHO05D004711 2.2e-110 404.8 343 65.3
QL08p054329 Quercus lobata HOM05D003976 ORTHO05D004711 1.4e-109 402.1 364 64.3
Rhsim03G0115800 Rhododendron simsii HOM05D003976 ORTHO05D004711 3.0e-107 394.4 308 70.5
vmacro00383 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 3.2e-101 374.4 325 65.5
Cpa.g.sc53.132 Carica papaya HOM05D003976 ORTHO05D004711 1.0e-94 352.8 299 66.6
CDE10G0443 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 2.6e-90 338.2 394 50.0
Lalb_Chr21g0313551 Lupinus albus HOM05D003976 ORTHO05D004711 1.8e-83 315.5 261 66.3
BcaNung07314 Brassica carinata HOM05D003976 ORTHO05D004711 7.0e-72 276.9 205 71.2
VMungo0720G2709 Vigna mungo HOM05D003976 ORTHO05D004711 4.0e-67 261.2 194 73.7
Cc02_g10920 Coffea canephora HOM05D003976 ORTHO05D004711 1.4e-59 236.1 183 68.3
HPP92_026132 Vanilla planifolia HOM05D003976 ORTHO05D004711 5.4e-56 224.2 170 68.8
ATR0730G060 Amborella trichopoda HOM05D003976 ORTHO05D004711 5.0e-54 217.6 130 81.5
PSO478G0690 Papaver somniferum HOM05D003976 ORTHO05D004711 2.3e-51 208.8 129 83.7
SEGI_25267 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 1.0e-46 193.4 140 67.9
CDE10G0301 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 9.9e-42 176.8 120 73.3
vmacro00384 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 4.6e-39 167.9 114 76.3
vmacro00385 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 7.3e-37 160.6 104 76.9
TPR.G33031 Trifolium pratense HOM05D003976 ORTHO05D004711 9.5e-37 160.2 105 75.2
Lj6g0023100 Lotus japonicus HOM05D003976 ORTHO05D004711 6.8e-35 154.1 102 74.5
CAN.G796.1 Capsicum annuum HOM05D003976 ORTHO05D004711 1.7e-33 149.4 179 50.3
Cc02_g10910 Coffea canephora HOM05D003976 ORTHO05D004711 3.8e-33 148.3 97 79.4
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 1.9e-32 146.0 205 43.9
Psat7g009440 Pisum sativum HOM05D003976 ORTHO05D004711 2.3e-30 139.0 113 62.8
Actinidia18608 Actinidia chinensis HOM05D003976 ORTHO05D004711 1.9e-29 136.0 137 55.5
SHI08886 Sapria himalayana HOM05D000002 ORTHO05D000001 1.4e-27 129.8 92 72.8
Gohir.D10G210566 Gossypium hirsutum HOM05D003976 ORTHO05D004711 1.5e-26 126.3 114 57.9
TPR.G28835 Trifolium pratense HOM05D003976 ORTHO05D004711 4.4e-26 124.8 96 64.6
Hma1.2p1_0384F.1_g140740 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 2.9e-25 122.1 89 74.2
SHI08885 Sapria himalayana HOM05D000002 ORTHO05D000001 2.9e-25 122.1 79 72.2
Cre01.g003050 Chlamydomonas reinhardtii HOM05D003976 ORTHO05D004711 3.8e-25 121.7 203 33.0
Cc06_g17220 Coffea canephora HOM05D003976 ORTHO05D004711 3.5e-23 115.2 82 68.3
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 4.8e-20 104.8 122 49.2
Prupe.5G231200 Prunus persica HOM05D003976 ORTHO05D004711 2.6e-18 99.0 99 57.6
AL491U10010 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 1.7e-17 96.3 58 79.3
Lalb_Chr21g0313561 Lupinus albus HOM05D003976 ORTHO05D004711 1.1e-16 93.6 81 61.7
Lalb_Chr21g0313691 Lupinus albus HOM05D003976 ORTHO05D004711 1.1e-16 93.6 81 61.7
Cc03_g09730 Coffea canephora HOM05D003976 ORTHO05D004711 2.4e-11 75.9 58 65.5
TPR.G6473 Trifolium pratense HOM05D003976 ORTHO05D004711 1.3e-09 70.1 48 70.8
Aa31LG6G7350 Aethionema arabicum HOM05D003976 ORTHO05D004711 2.5e-08 65.9 53 60.4
Lsat_1_v5_gn_6_63420 Lactuca sativa HOM05D003976 ORTHO05D004711 3.2e-08 65.5 71 45.1
HanXRQChr05g0134171 Helianthus annuus HOM05D003976 ORTHO05D004711 2.1e-07 62.8 42 73.8
Hma1.2p1_0384F.1_g140760 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 1.8e-06 59.7 33 84.8


User provided reference genes

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