Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0019800 Salix brachista HOM05D005304 ORTHO05D004438 3.3e-59 231.5 115 100.0
Potri.008G029600 Populus trichocarpa HOM05D005304 ORTHO05D004438 4.8e-50 201.1 113 90.3
Potri.010G231600 Populus trichocarpa HOM05D005304 ORTHO05D004438 1.6e-42 176.0 114 78.9
Sabra10G0179600 Salix brachista HOM05D005304 ORTHO05D004438 2.5e-35 152.1 111 73.9
Manes.07G093500 Manihot esculenta HOM05D005304 ORTHO05D004438 1.1e-33 146.7 117 65.0
Manes.10G053200 Manihot esculenta HOM05D005304 ORTHO05D004438 7.2e-22 107.5 117 54.7
TAR636G3524 Trochodendron aralioides HOM05D005304 ORTHO05D004438 1.2e-21 106.7 119 48.7
Duzib128G0830 Durio zibethinus HOM05D005304 ORTHO05D004438 3.5e-21 105.1 117 51.3
TAR623G1332 Trochodendron aralioides HOM05D005304 ORTHO05D004438 7.9e-21 104.0 119 49.6
Manes.10G053300 Manihot esculenta HOM05D005304 ORTHO05D004438 1.3e-20 103.2 117 52.1
Duzib128G0918 Durio zibethinus HOM05D005304 ORTHO05D004438 3.0e-20 102.1 117 48.7
Haze_16785 Corylus avellana HOM05D005304 ORTHO05D004438 3.9e-20 101.7 125 48.8
QL03p021677 Quercus lobata HOM05D005304 ORTHO05D004438 3.9e-20 101.7 129 44.2
Duzib114G0655 Durio zibethinus HOM05D005304 ORTHO05D004438 6.7e-20 100.9 112 50.9
Cc02_g10500 Coffea canephora HOM05D005304 ORTHO05D004438 8.7e-20 100.5 126 48.4
Oeu059829.1 Olea europaea HOM05D005304 ORTHO05D004438 8.7e-20 100.5 114 47.4
Lsat_1_v5_gn_8_22700 Lactuca sativa HOM05D005304 ORTHO05D004438 1.5e-19 99.8 120 50.0
COL.COLO4_32872 Corchorus olitorius HOM05D005304 ORTHO05D004438 2.5e-19 99.0 130 46.9
Nn6g35176 Nelumbo nucifera HOM05D005304 ORTHO05D004438 2.5e-19 99.0 114 50.0
QL03p011649 Quercus lobata HOM05D005304 ORTHO05D004438 2.5e-19 99.0 129 44.2
Thecc.10G090600 Theobroma cacao HOM05D005304 ORTHO05D004438 3.3e-19 98.6 119 48.7
Cfa001771 Carpinus fangiana HOM05D005304 ORTHO05D004438 5.7e-19 97.8 131 46.6
CiPaw.01G264700 Carya illinoinensis HOM05D005304 ORTHO05D004438 7.4e-19 97.4 125 48.0
FAN03G1417 Fragaria x ananassa HOM05D005304 ORTHO05D004438 9.7e-19 97.1 113 47.8
TWI38G0392 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 9.7e-19 97.1 114 49.1
CiPaw.02G169800 Carya illinoinensis HOM05D005304 ORTHO05D004438 1.3e-18 96.7 121 43.8
RcHm_v2.0_Chr1g0336411 Rosa chinensis HOM05D005304 ORTHO05D004438 1.6e-18 96.3 113 48.7
CSS0003867 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 2.2e-18 95.9 107 50.5
FvH4_7g06790 Fragaria vesca HOM05D005304 ORTHO05D004438 2.2e-18 95.9 120 49.2
FAN06G1004 Fragaria x ananassa HOM05D005304 ORTHO05D004438 2.2e-18 95.9 120 49.2
FAN10G3090 Fragaria x ananassa HOM05D005304 ORTHO05D004438 2.2e-18 95.9 120 49.2
Gohir.A01G128800 Gossypium hirsutum HOM05D005304 ORTHO05D004438 2.2e-18 95.9 118 47.5
PGR044G1405 Punica granatum HOM05D005304 ORTHO05D004438 2.8e-18 95.5 117 46.2
QL08p052941 Quercus lobata HOM05D005304 ORTHO05D004438 2.8e-18 95.5 69 65.2
TAR633G0523 Trochodendron aralioides HOM05D005304 ORTHO05D004438 2.8e-18 95.5 106 50.9
Lj5g0009089 Lotus japonicus HOM05D005304 ORTHO05D004438 3.7e-18 95.1 134 42.5
Gohir.D01G118400 Gossypium hirsutum HOM05D005304 ORTHO05D004438 6.3e-18 94.4 118 47.5
Gorai.002G144400 Gossypium raimondii HOM05D005304 ORTHO05D004438 6.3e-18 94.4 118 47.5
Lsat_1_v5_gn_9_70641 Lactuca sativa HOM05D005304 ORTHO05D004438 6.3e-18 94.4 121 42.1
SHI54636 Sapria himalayana HOM05D005304 ORTHO05D004438 1.1e-17 93.6 71 60.6
FAN01G2164 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.4e-17 93.2 113 46.9
VMungo0720G0262 Vigna mungo HOM05D005304 ORTHO05D004438 1.4e-17 93.2 142 38.7
TAR369G0323 Trochodendron aralioides HOM05D001401 ORTHO05D002222 1.8e-17 92.8 111 46.8
Oeu032435.1 Olea europaea HOM05D005304 ORTHO05D004438 2.4e-17 92.4 114 44.7
Phvul.007G141600 Phaseolus vulgaris HOM05D005304 ORTHO05D004438 4.1e-17 91.7 134 39.6
Rhsim03G0110900 Rhododendron simsii HOM05D005304 ORTHO05D004438 4.1e-17 91.7 101 51.5
Glyma.20G190800 Glycine max HOM05D005304 ORTHO05D004438 1.5e-16 89.7 134 43.3
Lalb_Chr02g0151151 Lupinus albus HOM05D005304 ORTHO05D004438 2.0e-16 89.4 70 58.6
TWI63G0695 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 2.0e-16 89.4 117 49.6
Ca_10460_v3 Cicer arietinum L. HOM05D005304 ORTHO05D004438 4.5e-16 88.2 77 55.8
Nn2g13894 Nelumbo nucifera HOM05D005304 ORTHO05D004438 4.5e-16 88.2 121 48.8
MELO3C019852.2 Cucumis melo HOM05D005304 ORTHO05D004438 1.0e-15 87.0 126 46.0
Psat6g173960 Pisum sativum HOM05D005304 ORTHO05D004438 1.0e-15 87.0 145 38.6
Prupe.2G095100 Prunus persica HOM05D005304 ORTHO05D004438 1.0e-15 87.0 119 46.2
CsaV3_2G032750 Cucumis sativus L. HOM05D005304 ORTHO05D004438 1.3e-15 86.7 126 46.0
Atru.chr12.921 Acer truncatum HOM05D005304 ORTHO05D004438 1.7e-15 86.3 137 40.1
Gohir.A05G290700 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.7e-15 86.3 109 49.5
Lalb_Chr03g0036331 Lupinus albus HOM05D005304 ORTHO05D004438 1.7e-15 86.3 120 45.0
Nitab4.5_0000107g0230 Nicotiana tabacum HOM05D005304 ORTHO05D004438 1.7e-15 86.3 101 48.5
Gohir.D05G291900 Gossypium hirsutum HOM05D005304 ORTHO05D004438 2.2e-15 85.9 109 48.6
ClCG08G007940 Citrullus lanatus HOM05D005304 ORTHO05D004438 2.9e-15 85.5 130 45.4
FAN10G0320 Fragaria x ananassa HOM05D005304 ORTHO05D004438 2.9e-15 85.5 106 49.1
Gohir.A05G393600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 3.8e-15 85.1 78 56.4
Gohir.D04G021300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 3.8e-15 85.1 78 56.4
Gorai.009G307700 Gossypium raimondii HOM05D005304 ORTHO05D004438 3.8e-15 85.1 124 46.8
Gorai.012G025400 Gossypium raimondii HOM05D005304 ORTHO05D004438 3.8e-15 85.1 78 56.4
Migut.F01894 Erythranthe guttata HOM05D005304 ORTHO05D004438 6.5e-15 84.3 100 47.0
FAN12G4274 Fragaria x ananassa HOM05D005304 ORTHO05D004438 6.5e-15 84.3 124 45.2
Lalb_Chr06g0170051 Lupinus albus HOM05D005304 ORTHO05D004438 6.5e-15 84.3 87 51.7
Prupe.6G114400 Prunus persica HOM05D005304 ORTHO05D004438 6.5e-15 84.3 84 52.4
Potri.010G231700 Populus trichocarpa HOM05D005304 ORTHO05D004438 8.5e-15 84.0 103 47.6
ClCG05G021460 Citrullus lanatus HOM05D005304 ORTHO05D004438 1.1e-14 83.6 112 45.5
FAN02G4580 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.9e-14 82.8 108 48.1
Glyma.10G199500 Glycine max HOM05D005304 ORTHO05D004438 2.5e-14 82.4 146 37.7
TPR.G37843 Trifolium pratense HOM05D005304 ORTHO05D004438 2.5e-14 82.4 98 46.9
Medtr1g090837 Medicago truncatula HOM05D005304 ORTHO05D004438 4.2e-14 81.6 68 58.8
PGSC0003DMG400016914 Solanum tuberosum HOM05D005304 ORTHO05D004438 4.2e-14 81.6 118 42.4
Ciclev10033091m.g Citrus clementina HOM05D005304 ORTHO05D004438 5.5e-14 81.3 119 43.7
CANSAT56G0274 Cannabis sativa HOM05D005304 ORTHO05D004438 7.2e-14 80.9 85 51.8
Nitab4.5_0000593g0370 Nicotiana tabacum HOM05D005304 ORTHO05D004438 1.2e-13 80.1 105 45.7
Sed0018085 Sechium edule HOM05D005304 ORTHO05D004438 1.2e-13 80.1 125 41.6
Manes.11G153500 Manihot esculenta HOM05D005304 ORTHO05D004438 2.1e-13 79.3 122 40.2
Sed0010031 Sechium edule HOM05D005304 ORTHO05D004438 2.1e-13 79.3 118 43.2
Eucgr.J01033 Eucalyptus grandis HOM05D005304 ORTHO05D004438 2.7e-13 79.0 103 45.6
CSS0034177 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 3.6e-13 78.6 60 60.0
Aqoxy2G01602 Aquilegia oxysepala HOM05D005304 ORTHO05D004438 4.6e-13 78.2 74 52.7
MSTRG.27507 Avicennia marina HOM05D005304 ORTHO05D004438 4.6e-13 78.2 104 41.3
CsaV3_5G035790 Cucumis sativus L. HOM05D005304 ORTHO05D004438 4.6e-13 78.2 117 41.9
CiPaw.14G106000 Carya illinoinensis HOM05D005304 ORTHO05D004438 6.1e-13 77.8 87 49.4
Eucgr.J00398 Eucalyptus grandis HOM05D005304 ORTHO05D004438 1.0e-12 77.0 119 44.5
PGR044G0041 Punica granatum HOM05D005304 ORTHO05D004438 1.0e-12 77.0 121 43.8
SalBow6G1975 Salvia bowleyana HOM05D005304 ORTHO05D004438 1.0e-12 77.0 120 41.7
Solyc03g071710.1 Solanum lycopersicum HOM05D005304 ORTHO05D004438 1.0e-12 77.0 118 41.5
Sopen03g019970 Solanum pennellii HOM05D005304 ORTHO05D004438 1.0e-12 77.0 118 41.5
CiPaw.13G144100 Carya illinoinensis HOM05D005304 ORTHO05D004438 1.4e-12 76.6 82 51.2
SalBow4G2705 Salvia bowleyana HOM05D005304 ORTHO05D004438 1.8e-12 76.3 100 49.0
CAN.G612.11 Capsicum annuum HOM05D005304 ORTHO05D004438 3.0e-12 75.5 102 44.1
QL01p014739 Quercus lobata HOM05D005304 ORTHO05D004438 3.0e-12 75.5 80 50.0
Ciclev10029845m.g Citrus clementina HOM05D005304 ORTHO05D004438 8.8e-12 73.9 114 38.6
MELO3C012381.2 Cucumis melo HOM05D005304 ORTHO05D004438 8.8e-12 73.9 117 39.3
Potri.009G003400 Populus trichocarpa HOM05D005304 ORTHO05D004438 8.8e-12 73.9 119 37.8
Cpa.g.sc128.74 Carica papaya HOM05D005304 ORTHO05D004438 1.5e-11 73.2 102 47.1
Duzib168G0406 Durio zibethinus HOM05D005304 ORTHO05D004438 1.5e-11 73.2 72 51.4
Duzib150G0717 Durio zibethinus HOM05D005304 ORTHO05D004438 2.0e-11 72.8 75 49.3
PGR119G0321 Punica granatum HOM05D005304 ORTHO05D004438 2.0e-11 72.8 108 42.6
Sabra08G0019700 Salix brachista HOM05D005304 ORTHO05D004438 2.0e-11 72.8 102 44.1
CSS0028161 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 2.5e-11 72.4 59 57.6
Gorai.009G089100 Gossypium raimondii HOM05D005304 ORTHO05D004438 7.4e-11 70.9 95 43.2
Migut.F01597 Erythranthe guttata HOM05D005304 ORTHO05D004438 9.7e-11 70.5 110 41.8
Gohir.D05G087300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 9.7e-11 70.5 96 42.7
Thecc.09G296200 Theobroma cacao HOM05D005304 ORTHO05D004438 1.7e-10 69.7 70 51.4
Gohir.A05G084500 Gossypium hirsutum HOM05D005304 ORTHO05D004438 2.2e-10 69.3 63 54.0
Sed0009329 Sechium edule HOM05D005304 ORTHO05D004438 2.2e-10 69.3 56 57.1
Manes.04G012000 Manihot esculenta HOM05D005304 ORTHO05D004438 2.8e-10 68.9 119 40.3
Gohir.D07G109600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 6.3e-10 67.8 58 53.4
Gohir.A07G105600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 8.2e-10 67.4 58 53.4
MSTRG.9124 Avicennia marina HOM05D005304 ORTHO05D004438 1.4e-09 66.6 118 39.8
Sed0006013 Sechium edule HOM05D005304 ORTHO05D004438 1.4e-09 66.6 110 42.7
TWI79G0532 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 1.4e-09 66.6 81 37.0
Ciclev10033003m.g Citrus clementina HOM05D005304 ORTHO05D004438 4.1e-09 65.1 83 47.0
Lalb_Chr19g0129331 Lupinus albus HOM05D005304 ORTHO05D004438 4.1e-09 65.1 118 38.1
PGSC0003DMG400023483 Solanum tuberosum HOM05D005304 ORTHO05D004438 6.9e-09 64.3 117 40.2
RcHm_v2.0_Chr5g0056381 Rosa chinensis HOM05D025255 ORTHO05D004438 9.1e-09 63.9 90 45.6
Eucgr.J01032 Eucalyptus grandis HOM05D005304 ORTHO05D004438 2.6e-08 62.4 65 49.2
Gorai.001G117700 Gossypium raimondii HOM05D005304 ORTHO05D004438 3.4e-08 62.0 58 50.0
Sopen05g033870 Solanum pennellii HOM05D005304 ORTHO05D004438 3.4e-08 62.0 71 45.1
PGSC0003DMG400027330 Solanum tuberosum HOM05D005304 ORTHO05D004438 4.5e-08 61.6 101 41.6
PGR142G4012 Punica granatum HOM05D005304 ORTHO05D016259 5.9e-08 61.2 86 39.5
Solyc11g007860.1 Solanum lycopersicum HOM05D005304 ORTHO05D004438 5.9e-08 61.2 101 41.6
Sc25g0001350 Simmondsia chinensis HOM05D005304 ORTHO05D004438 1.0e-07 60.5 75 46.7
Sopen11g003720 Solanum pennellii HOM05D005304 ORTHO05D004438 1.0e-07 60.5 101 41.6
Eucgr.B03916 Eucalyptus grandis HOM05D005304 ORTHO05D004438 2.2e-07 59.3 92 44.6
Eucgr.G02732 Eucalyptus grandis HOM05D005304 ORTHO05D004438 2.2e-07 59.3 75 44.0
PGR102G2181 Punica granatum HOM05D005304 ORTHO05D004438 2.9e-07 58.9 74 44.6
TPR.G31694 Trifolium pratense HOM05D014522 ORTHO05D004438 2.9e-07 58.9 118 37.3
FAN21G1648 Fragaria x ananassa HOM05D025255 ORTHO05D004438 3.8e-07 58.5 58 53.4
SEGI_13512 Sequoiadendron giganteum HOM05D018057 ORTHO05D012767 3.8e-07 58.5 58 53.4
SEGI_20981 Sequoiadendron giganteum HOM05D018057 ORTHO05D012767 3.8e-07 58.5 58 53.4
BcaNung04931 Brassica carinata HOM05D008699 ORTHO05D012283 6.5e-07 57.8 113 40.7
BolC1t05388H Brassica oleracea HOM05D008699 ORTHO05D012283 8.5e-07 57.4 113 40.7
Hma1.2p1_0454F.1_g156290 Hydrangea macrophylla HOM05D005304 ORTHO05D004438 8.5e-07 57.4 123 36.6
Sopen11g003740 Solanum pennellii HOM05D021137 ORTHO05D004438 8.5e-07 57.4 74 43.2
FvH4_3g30440 Fragaria vesca HOM05D025255 ORTHO05D004438 1.1e-06 57.0 96 41.7
FAN11G2118 Fragaria x ananassa HOM05D025255 ORTHO05D004438 1.1e-06 57.0 96 41.7
FAN16G1536 Fragaria x ananassa HOM05D025255 ORTHO05D004438 1.1e-06 57.0 58 53.4
SEGI_05316 Sequoiadendron giganteum HOM05D018057 ORTHO05D004438 1.1e-06 57.0 69 47.8
Medtr4g056580 Medicago truncatula HOM05D014522 ORTHO05D004438 1.4e-06 56.6 119 35.3
Actinidia06715 Actinidia chinensis HOM05D005304 ORTHO05D004438 1.9e-06 56.2 95 42.1
A01p41700 Brassica napus HOM05D008699 ORTHO05D012283 1.9e-06 56.2 113 39.8
DCAR_019059 Daucus carota HOM05D005304 ORTHO05D004438 1.9e-06 56.2 68 48.5
Nitab4.5_0001163g0010 Nicotiana tabacum HOM05D005304 ORTHO05D004438 2.5e-06 55.8 73 46.6
Solyc11g007880.1 Solanum lycopersicum HOM05D021137 ORTHO05D004438 3.2e-06 55.5 74 41.9
A03p36610 Brassica napus HOM05D008699 ORTHO05D012283 4.2e-06 55.1 118 34.7
BraA01t04245Z Brassica rapa HOM05D008699 ORTHO05D012283 7.2e-06 54.3 113 39.8
BraA03t12826Z Brassica rapa HOM05D008699 ORTHO05D012283 9.4e-06 53.9 119 35.3
Cfa010131 Carpinus fangiana HOM05D005304 ORTHO05D004438 9.4e-06 53.9 59 54.2
Haze_23519 Corylus avellana HOM05D005304 ORTHO05D004438 9.4e-06 53.9 57 56.1


User provided reference genes

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