Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0019600 Salix brachista HOM05D006793 ORTHO05D003476 2.6e-234 815.1 427 100.0
Potri.008G029500 Populus trichocarpa HOM05D006793 ORTHO05D003476 8.7e-198 693.7 435 86.0
Sabra10G0179700 Salix brachista HOM05D006793 ORTHO05D003476 5.5e-152 541.6 448 68.5
Potri.010G231900 Populus trichocarpa HOM05D006793 ORTHO05D003476 5.7e-149 531.6 487 64.1
Manes.10G053400 Manihot esculenta HOM05D006793 ORTHO05D003476 7.1e-91 338.6 431 51.7
Manes.07G093300 Manihot esculenta HOM05D006793 ORTHO05D003476 2.7e-90 336.7 437 48.7
Duzib114G0110 Durio zibethinus HOM05D006793 ORTHO05D003476 3.0e-89 333.2 443 48.5
Duzib128G0427 Durio zibethinus HOM05D006793 ORTHO05D003476 1.5e-88 330.9 443 49.2
Gohir.A01G128900 Gossypium hirsutum HOM05D006793 ORTHO05D003476 5.6e-88 328.9 440 48.0
Gohir.D01G118500 Gossypium hirsutum HOM05D006793 ORTHO05D003476 1.4e-86 324.3 441 49.0
Thecc.10G090800 Theobroma cacao HOM05D006793 ORTHO05D003476 3.1e-86 323.2 451 47.2
Gorai.002G144500 Gossypium raimondii HOM05D006793 ORTHO05D003476 9.0e-86 321.6 441 48.1
TAR636G1084 Trochodendron aralioides HOM05D006793 ORTHO05D003476 7.6e-85 318.5 464 46.1
Ciclev10031613m.g Citrus clementina HOM05D006793 ORTHO05D003476 3.5e-82 309.7 443 46.7
Actinidia06714 Actinidia chinensis HOM05D006793 ORTHO05D003476 4.6e-82 309.3 438 47.9
TAR633G2614 Trochodendron aralioides HOM05D006793 ORTHO05D009315 1.8e-78 297.4 484 44.2
TAR476G0002 Trochodendron aralioides HOM05D006793 ORTHO05D003476 1.5e-77 294.3 484 44.2
GSVIVG01005025001 Vitis vinifera HOM05D006793 ORTHO05D003476 2.9e-76 290.0 449 45.2
Prupe.2G095200 Prunus persica HOM05D006793 ORTHO05D003476 1.0e-73 281.6 472 42.2
COL.COLO4_32868 Corchorus olitorius HOM05D006793 ORTHO05D003476 1.8e-73 280.8 550 38.7
Dinv31270 Davidia involucrata HOM05D006793 ORTHO05D003476 3.9e-73 279.6 439 45.3
Hma1.2p1_0454F.1_g156300 Hydrangea macrophylla HOM05D006793 ORTHO05D003476 6.7e-73 278.9 439 43.3
FAN10G1411 Fragaria x ananassa HOM05D006793 ORTHO05D003476 3.3e-72 276.6 494 40.7
MD02G1241700 Malus domestica HOM05D006793 ORTHO05D003476 9.6e-72 275.0 506 41.5
Cfa001770 Carpinus fangiana HOM05D006793 ORTHO05D003476 4.8e-71 272.7 522 39.1
FAN06G1743 Fragaria x ananassa HOM05D006793 ORTHO05D003476 4.8e-71 272.7 495 40.8
FvH4_7g06800 Fragaria vesca HOM05D006793 ORTHO05D003476 1.1e-70 271.6 495 40.6
CANSAT56G4476 Cannabis sativa HOM05D006793 ORTHO05D003476 7.6e-69 265.4 503 40.2
FAN01G0293 Fragaria x ananassa HOM05D006793 ORTHO05D003476 1.3e-68 264.6 489 40.1
RcHm_v2.0_Chr1g0336511 Rosa chinensis HOM05D006793 ORTHO05D003476 1.9e-67 260.8 493 41.4
Rhsim03G0110800 Rhododendron simsii HOM05D006793 ORTHO05D003476 6.0e-66 255.8 519 36.8
Atru.chr11.746 Acer truncatum HOM05D006793 ORTHO05D003476 3.0e-65 253.4 547 39.3
TWI38G2135 Tripterygium wilfordii HOM05D006793 ORTHO05D003476 5.7e-64 249.2 563 36.4
Nn6g35167 Nelumbo nucifera HOM05D006793 ORTHO05D003476 3.7e-63 246.5 451 39.5
CiPaw.01G264600 Carya illinoinensis HOM05D006793 ORTHO05D003476 1.8e-62 244.2 479 39.0
MELO3C019853.2 Cucumis melo HOM05D006793 ORTHO05D003476 2.4e-62 243.8 441 41.0
Eucgr.G02731 Eucalyptus grandis HOM05D006793 ORTHO05D003476 2.4e-62 243.8 465 38.5
QL08p052921 Quercus lobata HOM05D006793 ORTHO05D003476 3.1e-62 243.4 513 37.4
Nn2g13905 Nelumbo nucifera HOM05D006793 ORTHO05D003476 1.5e-61 241.1 471 39.1
Sed0017585 Sechium edule HOM05D006793 ORTHO05D003476 1.3e-60 238.0 443 40.4
CsaV3_2G032770 Cucumis sativus L. HOM05D006793 ORTHO05D003476 6.5e-60 235.7 467 39.4
PGR142G3005 Punica granatum HOM05D006793 ORTHO05D003476 1.4e-59 234.6 458 39.7
PSO339G4934 Papaver somniferum HOM05D006793 ORTHO05D003476 3.2e-59 233.4 446 39.2
Aqoxy2G01557 Aquilegia oxysepala HOM05D006793 ORTHO05D003476 1.6e-58 231.1 494 38.9
PSO801G0244 Papaver somniferum HOM05D006793 ORTHO05D003476 2.1e-58 230.7 445 39.1
Haze_16786 Corylus avellana HOM05D006793 ORTHO05D003476 6.1e-58 229.2 491 38.7
MD07G1075000 Malus domestica HOM05D006793 ORTHO05D003476 1.3e-57 228.0 466 38.8
Sopen11g003710 Solanum pennellii HOM05D006793 ORTHO05D003476 8.7e-57 225.3 534 34.8
Migut.F01893 Erythranthe guttata HOM05D006793 ORTHO05D003476 1.9e-56 224.2 466 38.2
PGSC0003DMG400027329 Solanum tuberosum HOM05D006793 ORTHO05D003476 4.3e-56 223.0 536 34.1
Solyc11g007850.2 Solanum lycopersicum HOM05D006793 ORTHO05D003476 6.3e-55 219.2 535 35.3
arahy.Tifrunner.gnm1.ann1.BT04C1 Arachis hypogaea HOM05D006793 ORTHO05D003476 3.4e-53 213.4 510 33.5
Nitab4.5_0006383g0010 Nicotiana tabacum HOM05D006793 ORTHO05D003476 4.5e-53 213.0 536 33.4
SalBow4G0791 Salvia bowleyana HOM05D006793 ORTHO05D003476 7.7e-53 212.2 496 35.3
Peaxi162Scf00321g00037 Petunia axillaris HOM05D006793 ORTHO05D003476 1.0e-52 211.8 515 34.0
arahy.Tifrunner.gnm1.ann1.U5ZVAW Arachis hypogaea HOM05D006793 ORTHO05D003476 1.3e-52 211.5 506 35.0
Lalb_Chr02g0151171 Lupinus albus HOM05D006793 ORTHO05D003476 1.7e-52 211.1 514 32.9
FAN03G3430 Fragaria x ananassa HOM05D006793 ORTHO05D003476 5.0e-52 209.5 450 37.1
Lalb_Chr21g0313091 Lupinus albus HOM05D006793 ORTHO05D003476 6.5e-52 209.1 509 33.6
MSTRG.27506 Avicennia marina HOM05D006793 ORTHO05D003476 4.2e-51 206.5 535 32.1
Glyma.20G190600 Glycine max HOM05D006793 ORTHO05D003476 4.2e-51 206.5 519 35.5
Dinv20859 Davidia involucrata HOM05D006793 ORTHO05D003476 9.4e-51 205.3 174 64.9
DCAR_019058 Daucus carota HOM05D006793 ORTHO05D003476 4.6e-50 203.0 480 35.8
Lj5g0011528 Lotus japonicus HOM05D006793 ORTHO05D003476 6.1e-50 202.6 515 33.0
SGA_v2.0_scaffold62G21362 Striga asiatica HOM05D006793 ORTHO05D003476 1.0e-49 201.8 462 34.8
AUR62002713 Chenopodium quinoa HOM05D006793 ORTHO05D003476 2.3e-49 200.7 505 36.0
EL10Ac8g19653 Beta vulgaris HOM05D006793 ORTHO05D003476 3.9e-49 199.9 503 35.0
AUR62030173 Chenopodium quinoa HOM05D006793 ORTHO05D003476 3.9e-49 199.9 507 34.1
MSTRG.404 Avicennia marina HOM05D006793 ORTHO05D003476 5.1e-49 199.5 536 34.1
Nitab4.5_0000593g0350 Nicotiana tabacum HOM05D006793 ORTHO05D003476 4.3e-48 196.4 525 31.6
Phvul.007G141300 Phaseolus vulgaris HOM05D006793 ORTHO05D003476 4.3e-48 196.4 504 33.7
Cc02_g10490 Coffea canephora HOM05D006793 ORTHO05D003476 8.2e-47 192.2 591 32.5
Glyma.10G199900 Glycine max HOM05D006793 ORTHO05D003476 8.2e-47 192.2 526 32.7
ECA233G3433 Erigeron canadensis HOM05D006793 ORTHO05D003476 1.0e-44 185.3 445 36.0
ClCG08G007950 Citrullus lanatus HOM05D006793 ORTHO05D003476 3.8e-44 183.3 346 40.8
Sc20g0001440 Simmondsia chinensis HOM05D006793 ORTHO05D003476 8.5e-44 182.2 285 41.4
Aa31LG10G7260 Aethionema arabicum HOM05D000145 ORTHO05D003476 1.9e-43 181.0 477 32.1
AL5G32750 Arabidopsis lyrata HOM05D006793 ORTHO05D003476 2.5e-43 180.6 512 33.2
Oeu060293.1 Olea europaea HOM05D006793 ORTHO05D003476 6.1e-42 176.0 523 32.1
AT3G52170 Arabidopsis thaliana HOM05D006793 ORTHO05D003476 4.4e-40 169.9 510 32.7
VMungo0720G1705 Vigna mungo HOM05D006793 ORTHO05D003476 7.4e-40 169.1 171 56.1
THA.LOC104824314 Tarenaya hassleriana HOM05D006793 ORTHO05D003476 2.2e-39 167.5 546 31.9
Carub.0005s1853 Capsella rubella HOM05D006793 ORTHO05D003476 3.7e-39 166.8 501 32.9
C04p40750 Brassica napus HOM05D000992 ORTHO05D006704 6.3e-39 166.0 487 33.9
BolC4t25659H Brassica oleracea HOM05D000992 ORTHO05D006704 6.3e-39 166.0 487 33.9
Medtr1g090853 Medicago truncatula HOM05D006793 ORTHO05D003476 4.1e-38 163.3 173 54.9
TPR.G37771 Trifolium pratense HOM05D006793 ORTHO05D003476 5.3e-38 162.9 549 30.6
CARHR161930 Cardamine hirsuta HOM05D006793 ORTHO05D003476 1.2e-37 161.8 492 31.7
Sp5g10100 Schrenkiella parvula HOM05D006793 ORTHO05D003476 1.5e-37 161.4 520 30.6
BcaC02g09274 Brassica carinata HOM05D006793 ORTHO05D003476 4.5e-37 159.8 481 34.1
A03p48750 Brassica napus HOM05D006793 ORTHO05D003476 7.7e-37 159.1 455 33.2
Cpa.g.sc128.73 Carica papaya HOM05D006793 ORTHO05D003476 1.0e-36 158.7 423 35.5
Lsat_1_v5_gn_8_22741 Lactuca sativa HOM05D006793 ORTHO05D003476 2.9e-36 157.1 434 34.1
MBI17_g07069_MAGBIO Magnolia biondii HOM05D006793 ORTHO05D003476 6.5e-36 156.0 513 32.6
BraA03t13975Z Brassica rapa HOM05D006793 ORTHO05D003476 1.5e-35 154.8 460 32.8
Psat6g174040 Pisum sativum HOM05D006793 ORTHO05D003476 2.5e-35 154.1 189 52.9
Lsat_1_v5_gn_2_103100 Lactuca sativa HOM05D006793 ORTHO05D003476 5.5e-35 152.9 296 38.2
Sed0009649 Sechium edule HOM05D006793 ORTHO05D003476 5.5e-35 152.9 444 32.2
CSS0025253 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D000001 7.2e-35 152.5 406 34.5
A04p07200 Brassica napus HOM05D006793 ORTHO05D003476 6.1e-34 149.4 506 32.4
BraA04t16415Z Brassica rapa HOM05D000992 ORTHO05D006704 8.8e-33 145.6 500 32.0
ECA238G3554 Erigeron canadensis HOM05D006793 ORTHO05D003476 1.5e-32 144.8 418 31.8
Thhalv10010306m.g Eutrema salsugineum HOM05D006793 ORTHO05D003476 1.5e-32 144.8 515 31.3
MD02G1237300 Malus domestica HOM05D006793 ORTHO05D003476 2.8e-31 140.6 435 33.1
HanXRQChr14g0456191 Helianthus annuus HOM05D006793 ORTHO05D003476 1.0e-28 132.1 395 29.6
CDE03G0520 Ceratophyllum demersum HOM05D048142 ORTHO05D003476 6.5e-28 129.4 523 27.7
vmacro07208 Vaccinium macrocarpon HOM05D000992 ORTHO05D006704 3.0e-25 120.6 200 43.0
ATR1126G067 Amborella trichopoda HOM05D006793 ORTHO05D003476 4.4e-24 116.7 139 48.9
CSS0050149 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D003476 5.7e-24 116.3 313 36.1
HanXRQChr12g0368421 Helianthus annuus HOM05D006793 ORTHO05D003476 3.5e-21 107.1 395 28.1
Ca_10462_v3 Cicer arietinum L. HOM05D001977 ORTHO05D002246 5.0e-20 103.2 426 28.6
HPP92_027826 Vanilla planifolia HOM05D006793 ORTHO05D003476 5.0e-20 103.2 379 27.7
Zm00001eb137780 Zea mays HOM05D006793 ORTHO05D003476 9.4e-19 99.0 64 73.4
Os12g0528000 Oryza sativa ssp. japonica HOM05D006793 ORTHO05D003476 1.2e-16 92.0 185 38.9
unitig_899.g14485 Utricularia gibba HOM05D006793 ORTHO05D003476 7.5e-16 89.4 447 26.2
Dinv20860 Davidia involucrata HOM05D006793 ORTHO05D003476 5.4e-14 83.2 98 48.0
Zm00001eb410830 Zea mays HOM05D006793 ORTHO05D003476 5.4e-14 83.2 365 30.4
SEGI_29881 Sequoiadendron giganteum HOM05D006793 ORTHO05D003476 5.0e-12 76.6 212 31.6
MSTRG.22259 Avicennia marina HOM05D008057 ORTHO05D003476 7.2e-11 72.8 79 43.0
Cc00_g01550 Coffea canephora HOM05D008057 ORTHO05D003476 4.7e-10 70.1 73 46.6
CsaV3_1G033920 Cucumis sativus L. HOM05D008057 ORTHO05D003476 6.1e-10 69.7 138 36.2
Hma1.2p1_0016F.1_g010880 Hydrangea macrophylla HOM05D008057 ORTHO05D003476 6.1e-10 69.7 81 39.5
Medtr6g069010 Medicago truncatula HOM05D008057 ORTHO05D003476 6.1e-10 69.7 83 43.4
Peaxi162Scf00171g00028 Petunia axillaris HOM05D008057 ORTHO05D003476 8.0e-10 69.3 106 35.8
CSS0004401 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D003476 2.3e-09 67.8 40 82.5
ClCG03G001720 Citrullus lanatus HOM05D008057 ORTHO05D003476 4.0e-09 67.0 76 44.7
Gohir.A03G090600 Gossypium hirsutum HOM05D008057 ORTHO05D003476 5.2e-09 66.6 89 38.2
MELO3C020667.2 Cucumis melo HOM05D008057 ORTHO05D003476 6.8e-09 66.2 91 40.7
Cpa.g.sc124.3 Carica papaya HOM05D008057 ORTHO05D003476 8.9e-09 65.9 77 40.3
Gohir.D02G118700 Gossypium hirsutum HOM05D008057 ORTHO05D003476 8.9e-09 65.9 89 38.2
Nitab4.5_0009307g0060 Nicotiana tabacum HOM05D008057 ORTHO05D003476 1.2e-08 65.5 72 40.3
Cfa017812 Carpinus fangiana HOM05D008057 ORTHO05D003476 2.6e-08 64.3 79 36.7
CiPaw.16G075800 Carya illinoinensis HOM05D008057 ORTHO05D003476 2.6e-08 64.3 79 38.0
Gorai.005G135100 Gossypium raimondii HOM05D008057 ORTHO05D003476 2.6e-08 64.3 89 37.1
TPR.G31356 Trifolium pratense HOM05D008057 ORTHO05D003476 5.7e-08 63.2 61 47.5
AT5G58210 Arabidopsis thaliana HOM05D012436 ORTHO05D003476 7.5e-08 62.8 63 47.6
COL.COLO4_33681 Corchorus olitorius HOM05D002656 ORTHO05D003062 7.5e-08 62.8 166 28.3
Dinv22201 Davidia involucrata HOM05D008057 ORTHO05D003476 7.5e-08 62.8 76 39.5
Nn3g18533 Nelumbo nucifera HOM05D008057 ORTHO05D003476 7.5e-08 62.8 79 39.2
CARHR272010 Cardamine hirsuta HOM05D012436 ORTHO05D003476 9.8e-08 62.4 63 44.4
GSVIVG01024238001 Vitis vinifera HOM05D008057 ORTHO05D003476 9.8e-08 62.4 55 52.7
Nitab4.5_0008182g0020 Nicotiana tabacum HOM05D008057 ORTHO05D003476 1.3e-07 62.0 72 38.9
THA.LOC104805620 Tarenaya hassleriana HOM05D012436 ORTHO05D003476 1.3e-07 62.0 89 38.2
Thhalv10014108m.g Eutrema salsugineum HOM05D012436 ORTHO05D003476 1.7e-07 61.6 63 47.6
Lj2g0026608 Lotus japonicus HOM05D008057 ORTHO05D003476 1.7e-07 61.6 83 36.1
SGA_v2.0_scaffold14G06996 Striga asiatica HOM05D008057 ORTHO05D003476 1.7e-07 61.6 206 26.7
Migut.N02713 Erythranthe guttata HOM05D008057 ORTHO05D003476 2.2e-07 61.2 99 38.4
CDE04G2158 Ceratophyllum demersum HOM05D008057 ORTHO05D003476 2.9e-07 60.8 213 26.8
Lalb_Chr14g0370111 Lupinus albus HOM05D008057 ORTHO05D003476 2.9e-07 60.8 60 41.7
Psat1g117960 Pisum sativum HOM05D008057 ORTHO05D003476 2.9e-07 60.8 81 40.7
QL10p035701 Quercus lobata HOM05D008057 ORTHO05D003476 3.7e-07 60.5 131 30.5
AL8G34310 Arabidopsis lyrata HOM05D012436 ORTHO05D003476 4.9e-07 60.1 63 46.0
Atru.chr9.28 Acer truncatum HOM05D008057 ORTHO05D003476 8.3e-07 59.3 84 34.5
ECA233G4523 Erigeron canadensis HOM05D008057 ORTHO05D003476 8.3e-07 59.3 117 30.8
RcHm_v2.0_Chr7g0218101 Rosa chinensis HOM05D015681 ORTHO05D003476 1.1e-06 58.9 138 30.4
Glyma.16G210200 Glycine max HOM05D008057 ORTHO05D003476 1.4e-06 58.5 66 40.9
PSO782G0732 Papaver somniferum HOM05D045975 ORTHO05D003476 1.4e-06 58.5 74 35.1
TAR311G0002 Trochodendron aralioides HOM05D008057 ORTHO05D003476 1.4e-06 58.5 86 33.7
Rhsim10G0138900 Rhododendron simsii HOM05D008057 ORTHO05D003476 1.8e-06 58.2 76 39.5
Ciclev10020800m.g Citrus clementina HOM05D008057 ORTHO05D003476 2.4e-06 57.8 74 35.1
Oeu046660.1 Olea europaea HOM05D006793 ORTHO05D003476 2.4e-06 57.8 225 27.1
unitig_746.g26880 Utricularia gibba HOM05D008057 ORTHO05D003476 2.4e-06 57.8 78 42.3
Potri.018G151900 Populus trichocarpa HOM05D008057 ORTHO05D003476 3.2e-06 57.4 88 30.7
Sabra18G0127300 Salix brachista HOM05D008057 ORTHO05D003476 3.2e-06 57.4 88 30.7
Sp6g19870 Schrenkiella parvula HOM05D012436 ORTHO05D003476 4.1e-06 57.0 282 25.2
DCAR_014755 Daucus carota HOM05D008057 ORTHO05D003476 5.4e-06 56.6 74 39.2
MBI03_g11904_MAGBIO Magnolia biondii HOM05D008057 ORTHO05D003476 5.4e-06 56.6 338 23.4
arahy.Tifrunner.gnm1.ann1.1W7ASM Arachis hypogaea HOM05D008057 ORTHO05D003476 7.0e-06 56.2 82 34.1
Sed0004109 Sechium edule HOM05D008057 ORTHO05D003476 7.0e-06 56.2 76 38.2
C07p46840 Brassica napus HOM05D006793 ORTHO05D003476 9.2e-06 55.8 166 31.3


User provided reference genes

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