Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0016900 Salix brachista HOM05D008140 ORTHO05D009650 1.6e-100 369.4 183 100.0
Potri.008G025100 Populus trichocarpa HOM05D008140 ORTHO05D009650 8.6e-78 293.9 177 81.9
Potri.008G025200 Populus trichocarpa HOM05D008140 ORTHO05D009650 1.1e-77 293.5 177 82.5
Sabra10G0182500 Salix brachista HOM05D008140 ORTHO05D009650 1.7e-62 243.0 177 71.2
Potri.010G235400 Populus trichocarpa HOM05D008140 ORTHO05D009650 2.3e-62 242.7 177 70.6
Cfa011233 Carpinus fangiana HOM05D008140 ORTHO05D009650 1.5e-29 133.7 160 50.0
QL04p042101 Quercus lobata HOM05D008140 ORTHO05D009650 4.3e-29 132.1 176 44.9
QL04p041480 Quercus lobata HOM05D008140 ORTHO05D009650 1.7e-25 120.2 165 43.0
CiPaw.13G036800 Carya illinoinensis HOM05D008140 ORTHO05D009650 2.9e-25 119.4 148 50.0
FAN01G1993 Fragaria x ananassa HOM05D008140 ORTHO05D009650 1.4e-24 117.1 148 45.3
Duzib106G0172 Durio zibethinus HOM05D008140 ORTHO05D009650 1.6e-23 113.6 156 45.5
MD07G1068400 Malus domestica HOM05D008140 ORTHO05D009650 7.9e-23 111.3 168 45.2
Prupe.2G086100 Prunus persica HOM05D008140 ORTHO05D009650 7.9e-23 111.3 161 47.8
FAN03G1479 Fragaria x ananassa HOM05D008140 ORTHO05D009650 1.3e-22 110.5 149 43.6
QL04p041665 Quercus lobata HOM05D008140 ORTHO05D009650 3.0e-22 109.4 159 42.1
COL.COLO4_06812 Corchorus olitorius HOM05D008140 ORTHO05D009650 3.9e-22 109.0 183 42.1
FvH4_7g05940 Fragaria vesca HOM05D008140 ORTHO05D009650 5.1e-22 108.6 149 43.6
FAN06G2722 Fragaria x ananassa HOM05D008140 ORTHO05D009650 5.1e-22 108.6 149 43.6
Cfa011234 Carpinus fangiana HOM05D008140 ORTHO05D009650 1.5e-21 107.1 165 44.2
FAN10G4346 Fragaria x ananassa HOM05D008140 ORTHO05D009650 1.9e-21 106.7 149 43.6
TWI38G0562 Tripterygium wilfordii HOM05D008140 ORTHO05D009650 2.5e-21 106.3 166 42.8
Haze_02596 Corylus avellana HOM05D008140 ORTHO05D009650 4.3e-21 105.5 164 42.7
RcHm_v2.0_Chr1g0333141 Rosa chinensis HOM05D008140 ORTHO05D009650 2.1e-20 103.2 170 42.9
Manes.07G090200 Manihot esculenta HOM05D008140 ORTHO05D009650 8.2e-20 101.3 107 56.1
RcHm_v2.0_Chr1g0333151 Rosa chinensis HOM05D008140 ORTHO05D009650 4.0e-19 99.0 170 42.9
Thecc.10G110900 Theobroma cacao HOM05D008140 ORTHO05D009650 1.7e-17 93.6 168 42.3
Ciclev10033301m.g Citrus clementina HOM05D008140 ORTHO05D009650 2.2e-17 93.2 167 38.9
Haze_02595 Corylus avellana HOM05D008140 ORTHO05D009650 9.3e-16 87.8 166 39.8
CiPaw.13G036900 Carya illinoinensis HOM05D008140 ORTHO05D009650 1.0e-14 84.3 165 38.8
QL04p041477 Quercus lobata HOM05D008140 ORTHO05D009650 1.5e-13 80.5 149 39.6
Cfa011231 Carpinus fangiana HOM05D008140 ORTHO05D009650 1.9e-13 80.1 124 44.4
Haze_02597 Corylus avellana HOM05D008140 ORTHO05D009650 9.7e-13 77.8 123 44.7
AL4G36090 Arabidopsis lyrata HOM05D008140 ORTHO05D009650 1.3e-12 77.4 160 35.0
AT2G38790 Arabidopsis thaliana HOM05D008140 ORTHO05D009650 2.2e-12 76.6 161 35.4
CiPaw.14G029100 Carya illinoinensis HOM05D008140 ORTHO05D009650 2.2e-12 76.6 175 35.4
Lalb_Chr06g0170171 Lupinus albus HOM05D008140 ORTHO05D009650 2.2e-12 76.6 139 37.4
BolC4t22473H Brassica oleracea HOM05D008140 ORTHO05D009650 2.8e-12 76.3 178 34.3
CARHR133500 Cardamine hirsuta HOM05D008140 ORTHO05D009650 2.8e-12 76.3 167 35.9
BcaC02g12023 Brassica carinata HOM05D008140 ORTHO05D009650 3.7e-12 75.9 178 34.3
C04p08800 Brassica napus HOM05D008140 ORTHO05D009650 4.8e-12 75.5 178 34.3
A05p07360 Brassica napus HOM05D008140 ORTHO05D009650 6.3e-12 75.1 178 34.3
BraA05t19701Z Brassica rapa HOM05D008140 ORTHO05D009650 6.3e-12 75.1 178 34.3
A03p21600 Brassica napus HOM05D008140 ORTHO05D009650 8.2e-12 74.7 167 35.9
BraA03t11396Z Brassica rapa HOM05D008140 ORTHO05D009650 8.2e-12 74.7 167 35.9
Carub.0004s2081 Capsella rubella HOM05D008140 ORTHO05D009650 1.1e-11 74.3 151 35.8
CiPaw.13G036700 Carya illinoinensis HOM05D008140 ORTHO05D009650 1.8e-11 73.6 165 37.0
Nitab4.5_0001850g0010 Nicotiana tabacum HOM05D009634 ORTHO05D009650 1.8e-11 73.6 122 40.2
THA.LOC104803169 Tarenaya hassleriana HOM05D008140 ORTHO05D009650 1.8e-11 73.6 145 37.2
THA.LOC104803183 Tarenaya hassleriana HOM05D008140 ORTHO05D009650 3.1e-11 72.8 105 42.9
A05p07380 Brassica napus HOM05D008140 ORTHO05D009650 4.1e-11 72.4 165 35.2
BraA05t19703Z Brassica rapa HOM05D008140 ORTHO05D009650 4.1e-11 72.4 165 35.2
Cfa011235 Carpinus fangiana HOM05D008140 ORTHO05D009650 5.3e-11 72.0 113 44.2
Oeu026565.1 Olea europaea HOM05D009634 ORTHO05D009650 6.9e-11 71.6 114 39.5
Peaxi162Scf00244g00074 Petunia axillaris HOM05D009634 ORTHO05D009650 6.9e-11 71.6 96 43.8
TAR636G0417 Trochodendron aralioides HOM05D008140 ORTHO05D009650 9.0e-11 71.2 189 35.4
BcaB02g09155 Brassica carinata HOM05D008140 ORTHO05D009650 1.2e-10 70.9 177 32.2
BcaB02g09156 Brassica carinata HOM05D008140 ORTHO05D009650 1.2e-10 70.9 177 32.2
C03p25590 Brassica napus HOM05D008140 ORTHO05D009650 2.6e-10 69.7 148 34.5
BolC3t14947H Brassica oleracea HOM05D008140 ORTHO05D009650 2.6e-10 69.7 148 34.5
CANSAT56G1901 Cannabis sativa HOM05D008140 ORTHO05D009650 2.6e-10 69.7 144 34.7
Nitab4.5_0002878g0010 Nicotiana tabacum HOM05D009634 ORTHO05D009650 1.0e-09 67.8 103 41.7
Peaxi162Scf00244g00075 Petunia axillaris HOM05D009634 ORTHO05D009650 1.7e-09 67.0 113 39.8
Sp4g21180 Schrenkiella parvula HOM05D008140 ORTHO05D009650 2.9e-09 66.2 170 31.2
PGSC0003DMG400027311 Solanum tuberosum HOM05D009634 ORTHO05D009650 3.2e-08 62.8 105 39.0
Sopen11g003360 Solanum pennellii HOM05D009634 ORTHO05D009650 5.5e-08 62.0 107 39.3
Solyc11g007520.1 Solanum lycopersicum HOM05D009634 ORTHO05D009650 7.2e-08 61.6 107 38.3
Nitab4.5_0012334g0020 Nicotiana tabacum HOM05D009634 ORTHO05D009650 9.4e-08 61.2 99 39.4
Rhsim03G0105800 Rhododendron simsii HOM05D008140 ORTHO05D009650 2.1e-07 60.1 109 38.5
Oeu059859.1 Olea europaea HOM05D009634 ORTHO05D009650 3.6e-07 59.3 109 35.8
Aqoxy2G01366 Aquilegia oxysepala HOM05D008140 ORTHO05D009650 6.1e-07 58.5 142 29.6
Nitab4.5_0002878g0050 Nicotiana tabacum HOM05D009634 ORTHO05D009650 1.4e-06 57.4 98 35.7
Nitab4.5_0002878g0060 Nicotiana tabacum HOM05D009634 ORTHO05D009650 2.3e-06 56.6 98 36.7


User provided reference genes

Program Settings