Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0010800 Salix brachista HOM05D000001 ORTHO05D349398 1.3e-134 483.0 242 100.0
Potri.010G241100 Populus trichocarpa HOM05D000001 ORTHO05D000003 2.0e-18 97.1 248 34.7
Prupe.2G073400 Prunus persica HOM05D000001 ORTHO05D000003 2.7e-18 96.7 137 45.3
CiPaw.14G034200 Carya illinoinensis HOM05D000001 ORTHO05D000003 2.2e-17 93.6 174 37.4
Sabra10G0188700 Salix brachista HOM05D000001 ORTHO05D000003 8.5e-17 91.7 248 33.5
Lj3P925T51 Lonicera japonica HOM05D000001 ORTHO05D000003 4.2e-16 89.4 154 40.3
MD10G1340500 Malus domestica HOM05D000001 ORTHO05D000003 5.5e-16 89.0 141 42.6
Manes.18G081300 Manihot esculenta HOM05D000001 ORTHO05D000003 1.6e-15 87.4 252 30.6
Duzib170G0567 Durio zibethinus HOM05D000001 ORTHO05D000003 8.0e-15 85.1 195 32.3
Gohir.A05G005950 Gossypium hirsutum HOM05D000001 ORTHO05D000003 6.8e-14 82.0 195 32.8
COL.COLO4_29578 Corchorus olitorius HOM05D000001 ORTHO05D000003 8.8e-14 81.6 213 31.9
Gorai.009G006800 Gossypium raimondii HOM05D000001 ORTHO05D000003 1.5e-13 80.9 195 31.8
Thecc.10G115300 Theobroma cacao HOM05D000001 ORTHO05D000003 2.6e-13 80.1 195 31.8
PGR044G1880 Punica granatum HOM05D000001 ORTHO05D000003 9.8e-13 78.2 185 35.1
Dinv31464 Davidia involucrata HOM05D000001 ORTHO05D000003 1.3e-12 77.8 185 35.1
CSS0023623 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 2.2e-12 77.0 185 32.4
CSS0030527 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 2.2e-12 77.0 185 32.4
Sc19g0000180 Simmondsia chinensis HOM05D000001 ORTHO05D000003 4.9e-12 75.9 187 33.2
CANSAT56G2151 Cannabis sativa HOM05D000001 ORTHO05D000003 6.3e-12 75.5 185 32.4
Haze_03494 Corylus avellana HOM05D000001 ORTHO05D000003 6.3e-12 75.5 183 32.8
BolC3t12773H Brassica oleracea HOM05D000001 ORTHO05D000003 8.3e-12 75.1 193 30.6
Phvul.007G035200 Phaseolus vulgaris HOM05D000001 ORTHO05D000003 8.3e-12 75.1 249 29.3
Actinidia18612 Actinidia chinensis HOM05D000001 ORTHO05D000003 1.1e-11 74.7 185 33.5
EL10Ac3g05082 Beta vulgaris HOM05D000001 ORTHO05D000003 1.1e-11 74.7 185 34.1
Ah.04g156760 Amaranthus hybridus HOM05D000001 ORTHO05D000003 1.4e-11 74.3 185 32.4
Ciclev10014627m.g Citrus clementina HOM05D000001 ORTHO05D000003 1.4e-11 74.3 184 33.2
Lalb_Chr21g0309091 Lupinus albus HOM05D000001 ORTHO05D000003 1.4e-11 74.3 249 29.3
Phvul.003G265400 Phaseolus vulgaris HOM05D000001 ORTHO05D000003 1.4e-11 74.3 249 29.7
BcaNung05150 Brassica carinata HOM05D000001 ORTHO05D000003 1.8e-11 73.9 188 30.3
CARHR208500 Cardamine hirsuta HOM05D000001 ORTHO05D000003 2.4e-11 73.6 191 30.4
AT5G04780 Arabidopsis thaliana HOM05D000001 ORTHO05D000003 4.1e-11 72.8 192 30.2
Medtr1g111670 Medicago truncatula HOM05D000001 ORTHO05D000003 7.0e-11 72.0 248 28.6
Psat6g230480 Pisum sativum HOM05D000001 ORTHO05D000003 7.0e-11 72.0 248 27.8
Glyma.20G112100 Glycine max HOM05D000001 ORTHO05D000003 9.2e-11 71.6 191 32.5
BcaB01g05915 Brassica carinata HOM05D000001 ORTHO05D000003 1.2e-10 71.2 192 29.2
TAR636G2817 Trochodendron aralioides HOM05D000001 ORTHO05D000003 1.2e-10 71.2 185 31.9
AL6G14440 Arabidopsis lyrata HOM05D000001 ORTHO05D000003 1.6e-10 70.9 191 29.3
Atru.chr12.1054_Atru.chr12.1055 Acer truncatum HOM05D000001 ORTHO05D000003 2.7e-10 70.1 184 31.0
Lj5g0019903 Lotus japonicus HOM05D000001 ORTHO05D000003 2.7e-10 70.1 185 31.4
THA.LOC104826964 Tarenaya hassleriana HOM05D000001 ORTHO05D000003 2.7e-10 70.1 194 30.9
ECA233G2659 Erigeron canadensis HOM05D000001 ORTHO05D000003 3.5e-10 69.7 185 31.9
HanXRQChr12g0368281 Helianthus annuus HOM05D000001 ORTHO05D000003 3.5e-10 69.7 185 29.7
Prupe.2G071000 Prunus persica HOM05D000001 ORTHO05D000003 3.5e-10 69.7 148 35.8
QL04p046945 Quercus lobata HOM05D000001 ORTHO05D000003 3.5e-10 69.7 187 32.6
TWI38G0516 Tripterygium wilfordii HOM05D000001 ORTHO05D000003 3.5e-10 69.7 185 29.2
VMungo0720G0108 Vigna mungo HOM05D000001 ORTHO05D000003 3.5e-10 69.7 186 32.3
Oeu033988.1 Olea europaea HOM05D000001 ORTHO05D000003 4.5e-10 69.3 184 32.1
DCAR_011741 Daucus carota HOM05D000663 ORTHO05D000834 5.9e-10 68.9 155 32.3
TPR.G26270 Trifolium pratense HOM05D000001 ORTHO05D000003 5.9e-10 68.9 218 29.4
ClCG08G008360 Citrullus lanatus HOM05D000001 ORTHO05D000003 7.7e-10 68.6 185 31.4
CsaV3_6G004340 Cucumis sativus L. HOM05D000001 ORTHO05D000003 1.0e-09 68.2 185 30.3
Os12g0156900 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D000003 1.3e-09 67.8 185 29.2
AUR62004848 Chenopodium quinoa HOM05D000001 ORTHO05D000003 1.7e-09 67.4 185 31.4
AUR62026968 Chenopodium quinoa HOM05D000001 ORTHO05D000003 1.7e-09 67.4 185 31.4
FvH4_7g02270 Fragaria vesca HOM05D000001 ORTHO05D000003 1.7e-09 67.4 185 31.9
Nn6g34800 Nelumbo nucifera HOM05D000001 ORTHO05D000003 1.7e-09 67.4 204 29.4
Carub.0006s0367 Capsella rubella HOM05D000001 ORTHO05D000003 2.9e-09 66.6 188 29.8
RcHm_v2.0_Chr1g0319571 Rosa chinensis HOM05D000001 ORTHO05D000003 2.9e-09 66.6 185 32.4
BcaNung05149 Brassica carinata HOM05D000001 ORTHO05D000003 3.8e-09 66.2 145 31.0
Ca_25651_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 3.8e-09 66.2 186 30.1
MELO3C030264.2 Cucumis melo HOM05D000001 ORTHO05D000003 3.8e-09 66.2 185 30.8
arahy.Tifrunner.gnm1.ann1.JML2SU Arachis hypogaea HOM05D000001 ORTHO05D000003 5.0e-09 65.9 195 31.8
FAN06G3884 Fragaria x ananassa HOM05D000001 ORTHO05D000003 5.0e-09 65.9 185 31.9
SHI24479 Sapria himalayana HOM05D000001 ORTHO05D000003 5.0e-09 65.9 186 29.6
Thhalv10015995m.g Eutrema salsugineum HOM05D000001 ORTHO05D000003 6.6e-09 65.5 185 28.6
Eucgr.J00275 Eucalyptus grandis HOM05D000001 ORTHO05D000003 1.1e-08 64.7 168 31.0
Lsat_1_v5_gn_8_24360 Lactuca sativa HOM05D000001 ORTHO05D000003 1.1e-08 64.7 185 28.6
Migut.F01602 Erythranthe guttata HOM05D000001 ORTHO05D000003 1.5e-08 64.3 184 32.1
FAN10G0053 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.5e-08 64.3 185 31.4
Sp6g38040 Schrenkiella parvula HOM05D000001 ORTHO05D000003 1.5e-08 64.3 188 28.2
GSVIVG01034655001 Vitis vinifera HOM05D000001 ORTHO05D000003 1.5e-08 64.3 185 29.7
unitig_899.g14530 Utricularia gibba HOM05D000001 ORTHO05D000003 2.5e-08 63.5 184 29.9
Aa31LG11G5620 Aethionema arabicum HOM05D005462 ORTHO05D000003 1.2e-07 61.2 187 26.7
MBI17_g01499_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 1.2e-07 61.2 141 34.8
Zm00001eb406960 Zea mays HOM05D000001 ORTHO05D000003 2.1e-07 60.5 140 31.4
Cc02_g09530 Coffea canephora HOM05D000001 ORTHO05D000003 4.7e-07 59.3 195 28.7
Nitab4.5_0003787g0040 Nicotiana tabacum HOM05D000001 ORTHO05D000003 6.1e-07 58.9 184 29.9
FAN03G2736 Fragaria x ananassa HOM05D000001 ORTHO05D000003 8.0e-07 58.5 185 30.3
Nitab4.5_0001047g0040 Nicotiana tabacum HOM05D000001 ORTHO05D000003 8.0e-07 58.5 184 29.9
MD05G1362900 Malus domestica HOM05D000001 ORTHO05D000003 1.8e-06 57.4 173 30.6
SGA_v2.0_scaffold13G06466 Striga asiatica HOM05D000001 ORTHO05D000003 2.3e-06 57.0 190 28.4
CAN.G143.11 Capsicum annuum HOM05D000001 ORTHO05D000003 3.0e-06 56.6 185 28.1
SalBow6G2047 Salvia bowleyana HOM05D000001 ORTHO05D000003 4.0e-06 56.2 148 31.8
Lj4g0017636 Lotus japonicus HOM05D000001 ORTHO05D000003 5.2e-06 55.8 149 33.6
Peaxi162Scf00125g00054 Petunia axillaris HOM05D000001 ORTHO05D000003 5.2e-06 55.8 185 28.1
Ah.03g135700 Amaranthus hybridus HOM05D000001 ORTHO05D000003 8.9e-06 55.1 177 26.0
AUR62041367 Chenopodium quinoa HOM05D000001 ORTHO05D000003 8.9e-06 55.1 141 36.2
AUR62043703 Chenopodium quinoa HOM05D000001 ORTHO05D000003 8.9e-06 55.1 141 36.2
PGSC0003DMG400007598 Solanum tuberosum HOM05D000001 ORTHO05D000003 8.9e-06 55.1 183 28.4


User provided reference genes

Program Settings