Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 1.7e-252 875.5 453 100.0
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 5.8e-200 701.0 468 80.1
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 1.5e-187 659.8 469 77.4
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 2.6e-184 649.0 468 76.1
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 2.2e-159 566.2 475 65.3
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 1.4e-140 503.8 465 59.8
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 1.4e-140 503.8 475 58.3
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 1.8e-140 503.4 475 58.1
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 2.8e-138 496.1 476 57.8
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 2.0e-136 490.0 477 58.3
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 7.7e-136 488.0 464 59.5
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 7.2e-134 481.5 474 56.5
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 7.2e-134 481.5 477 56.4
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 9.4e-134 481.1 466 58.2
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 2.1e-133 479.9 471 55.8
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 2.1e-133 479.9 474 57.0
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 2.7e-133 479.6 459 57.5
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 4.7e-133 478.8 470 57.4
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 6.1e-133 478.4 478 56.7
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 1.0e-132 477.6 468 57.1
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 1.0e-132 477.6 472 56.4
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 1.8e-132 476.9 469 56.5
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 1.1e-131 474.2 466 57.5
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 1.1e-131 474.2 470 56.8
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 9.7e-131 471.1 471 56.1
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 2.2e-130 469.9 464 58.2
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 3.7e-130 469.2 474 55.5
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 4.8e-130 468.8 475 55.6
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 2.4e-129 466.5 476 54.4
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 3.1e-129 466.1 469 55.9
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.2e-128 464.2 471 55.6
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 1.2e-128 464.2 471 55.4
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 2.9e-127 459.5 473 55.2
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 1.4e-126 457.2 473 55.0
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 2.5e-126 456.4 473 55.0
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 3.2e-126 456.1 477 54.9
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 9.4e-126 454.5 463 54.9
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 9.4e-126 454.5 473 56.9
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 2.7e-125 453.0 469 54.4
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 6.1e-125 451.8 473 55.2
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 1.0e-124 451.1 471 54.1
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 1.4e-124 450.7 474 54.2
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 3.9e-124 449.1 463 53.6
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 3.9e-124 449.1 463 53.6
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 5.2e-124 448.7 467 54.0
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 5.2e-124 448.7 461 54.9
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 7.4e-123 444.9 477 54.1
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 4.8e-122 442.2 476 52.9
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 1.6e-120 437.2 471 52.7
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 3.5e-120 436.0 601 45.6
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 3.8e-119 432.6 474 52.1
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 8.5e-119 431.4 471 53.9
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 1.1e-118 431.0 470 52.8
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 7.2e-118 428.3 466 53.2
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 2.0e-115 420.2 481 50.3
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 2.0e-115 420.2 457 52.5
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 1.7e-114 417.2 473 50.5
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 1.2e-112 411.0 472 51.1
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 2.0e-112 410.2 530 46.6
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 2.9e-111 406.4 492 49.4
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 2.5e-110 403.3 458 51.7
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 7.2e-110 401.7 466 50.0
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 1.6e-109 400.6 458 49.8
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 1.6e-109 400.6 398 54.5
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 2.7e-109 399.8 458 49.8
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 2.7e-109 399.8 477 47.6
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 3.6e-109 399.4 470 48.5
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 2.3e-108 396.7 473 49.3
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 2.3e-108 396.7 469 49.0
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 2.3e-108 396.7 494 46.8
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 4.0e-108 396.0 465 48.2
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 5.2e-108 395.6 468 48.9
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 6.8e-108 395.2 473 48.2
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 1.2e-107 394.4 459 47.5
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.5e-107 394.0 473 49.0
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 2.6e-107 393.3 460 47.8
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 4.4e-107 392.5 428 54.7
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 7.5e-107 391.7 464 48.5
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 7.5e-107 391.7 469 48.4
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 7.5e-107 391.7 471 51.2
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 1.7e-106 390.6 456 48.2
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 2.2e-106 390.2 459 49.0
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 2.2e-106 390.2 478 50.0
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 8.3e-106 388.3 466 48.3
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 1.1e-105 387.9 467 48.8
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 1.4e-105 387.5 457 48.4
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 1.4e-105 387.5 459 47.9
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 1.8e-105 387.1 466 47.6
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 2.7e-104 383.3 468 46.8
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 3.5e-104 382.9 467 46.7
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 4.5e-104 382.5 469 47.5
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 1.0e-103 381.3 467 46.5
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 2.3e-103 380.2 498 45.6
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 2.5e-102 376.7 350 57.1
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 1.2e-101 374.4 468 47.9
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 1.2e-101 374.4 474 47.5
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 4.7e-101 372.5 477 46.8
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 4.7e-101 372.5 474 48.1
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 6.1e-101 372.1 450 48.4
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 1.0e-100 371.3 477 46.5
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 1.4e-100 370.9 442 49.8
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 3.0e-100 369.8 463 45.6
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 1.2e-99 367.9 434 49.5
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 2.0e-99 367.1 472 46.8
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 3.4e-99 366.3 371 55.0
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 9.8e-99 364.8 474 47.9
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 1.1e-97 361.3 473 46.9
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 2.4e-97 360.1 389 50.6
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 5.4e-97 359.0 525 44.0
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 7.0e-97 358.6 458 46.5
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 1.6e-96 357.5 461 47.9
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 1.6e-96 357.5 461 47.9
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 2.0e-96 357.1 473 47.1
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 5.0e-95 352.4 465 46.7
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 8.6e-95 351.7 460 46.3
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 1.9e-94 350.5 465 45.6
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 3.3e-94 349.7 451 46.1
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 6.8e-92 342.0 456 43.9
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 1.4e-89 334.3 481 43.9
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 1.9e-89 334.0 463 46.2
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 5.4e-89 332.4 455 46.8
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 1.1e-86 324.7 278 58.6
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 1.5e-86 324.3 421 45.4
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 2.3e-84 317.0 309 53.7
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 5.2e-84 315.8 465 40.9
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 1.2e-83 314.7 369 45.5
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 2.0e-83 313.9 417 45.6
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 1.9e-81 307.4 458 41.3
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 4.1e-81 306.2 450 42.9
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 3.0e-79 300.1 432 42.8
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 4.3e-78 296.2 377 50.4
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 2.1e-77 293.9 359 43.7
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 1.1e-76 291.6 364 45.6
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.8e-76 290.8 455 42.0
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 2.6e-75 287.0 303 50.5
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 4.1e-73 279.6 470 39.4
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 5.4e-73 279.3 374 47.9
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 4.6e-72 276.2 388 43.0
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 2.5e-70 270.4 352 44.3
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 7.6e-67 258.8 367 43.6
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 1.3e-66 258.1 406 39.9
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 1.7e-63 247.7 320 43.8
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.7e-63 247.7 313 40.9
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 3.0e-63 246.9 313 40.9
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 1.2e-61 241.5 248 50.8
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 2.1e-61 240.7 219 59.8
BcaC06g32214 Brassica carinata HOM05D003737 ORTHO05D004640 3.2e-57 226.9 338 42.0
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 7.1e-57 225.7 391 35.5
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 7.1e-57 225.7 399 39.6
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.3e-55 221.5 316 42.4
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 3.3e-54 216.9 287 39.0
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 4.8e-53 213.0 366 37.4
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 3.1e-52 210.3 373 36.5
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 4.5e-51 206.5 255 47.1
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 5.8e-51 206.1 271 40.2
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 2.9e-50 203.8 186 55.4
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 8.4e-50 202.2 142 68.3
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 2.1e-48 197.6 361 37.7
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 1.3e-47 194.9 271 42.8
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 1.3e-45 188.3 241 42.7
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 8.1e-45 185.7 194 50.5
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 5.8e-43 179.5 452 31.9
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 4.9e-42 176.4 216 45.4
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 4.5e-35 153.3 134 56.0
Ciclev10003487m.g Citrus clementina HOM05D003737 ORTHO05D004640 3.8e-34 150.2 100 74.0
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 2.7e-32 144.1 239 39.7
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 3.9e-31 140.2 203 41.4
AUR62034111 Chenopodium quinoa HOM05D003737 ORTHO05D004640 5.0e-26 123.2 96 61.5
Cfa015121 Carpinus fangiana HOM05D003737 ORTHO05D004640 4.2e-25 120.2 74 77.0
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 4.6e-24 116.7 199 39.7
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 2.8e-21 107.5 192 36.5
Phvul.007G106800 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 3.7e-21 107.1 82 64.6
PRCOL_00004494 Prasinoderma coloniale HOM05D003737 ORTHO05D004640 3.1e-20 104.0 186 37.6
Haze_10688 Corylus avellana HOM05D003737 ORTHO05D004640 1.7e-18 98.2 129 45.7
Thhalv10015457m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 2.2e-18 97.8 81 59.3
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 2.1e-16 91.3 71 60.6
Atru.chr12.1692 Acer truncatum HOM05D003737 ORTHO05D004640 1.1e-14 85.5 55 74.5
CAN.G481.43 Capsicum annuum HOM05D000879 ORTHO05D002043 1.5e-09 68.6 52 59.6


User provided reference genes

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