Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0002400 Salix brachista HOM05D007702 ORTHO05D009736 2.9e-157 558.5 286 100.0
Potri.008G004800 Populus trichocarpa HOM05D007702 ORTHO05D009736 2.8e-115 419.1 273 83.5
Manes.06G177600 Manihot esculenta HOM05D007702 ORTHO05D009736 1.5e-73 280.4 278 58.6
MD09G1165300 Malus domestica HOM05D007702 ORTHO05D009736 1.3e-61 240.7 262 54.2
Haze_08173 Corylus avellana HOM05D007702 ORTHO05D009736 4.8e-59 232.3 253 54.5
Prupe.3G023000 Prunus persica HOM05D007702 ORTHO05D009736 1.8e-58 230.3 261 49.8
Thecc.06G057000 Theobroma cacao HOM05D007702 ORTHO05D009736 3.1e-58 229.6 253 53.4
Cfa012496 Carpinus fangiana HOM05D007702 ORTHO05D009736 2.6e-57 226.5 250 54.0
Duzib235G0870 Durio zibethinus HOM05D007702 ORTHO05D009736 4.5e-57 225.7 255 53.3
Gohir.A10G002000 Gossypium hirsutum HOM05D007702 ORTHO05D009736 1.9e-55 220.3 265 52.1
Ciclev10032212m.g Citrus clementina HOM05D007702 ORTHO05D009736 4.6e-54 215.7 270 48.9
Gorai.011G002500 Gossypium raimondii HOM05D007702 ORTHO05D009736 1.8e-53 213.8 252 52.8
CiPaw.11G097300 Carya illinoinensis HOM05D007702 ORTHO05D009736 3.9e-53 212.6 284 48.6
Gohir.D10G002100 Gossypium hirsutum HOM05D007702 ORTHO05D009736 1.1e-52 211.1 258 51.9
Cpa.g.sc155.12 Carica papaya HOM05D007702 ORTHO05D009736 1.3e-51 207.6 271 47.2
BraA06t23478Z Brassica rapa HOM05D007702 ORTHO05D009736 3.7e-51 206.1 244 51.6
BcaB07g33554 Brassica carinata HOM05D007702 ORTHO05D009736 4.8e-51 205.7 286 44.8
Cc03_g07590 Coffea canephora HOM05D007702 ORTHO05D009736 8.2e-51 204.9 266 49.2
RcHm_v2.0_Chr2g0149381 Rosa chinensis HOM05D007702 ORTHO05D009736 5.3e-50 202.2 236 50.8
CSS0020400 Camellia sinensis var. sinensis HOM05D007702 ORTHO05D009736 1.2e-49 201.1 273 46.9
Solyc01g102860.2 Solanum lycopersicum HOM05D007702 ORTHO05D009736 1.5e-49 200.7 253 48.2
A06p02690 Brassica napus HOM05D007702 ORTHO05D009736 2.0e-49 200.3 287 47.0
QL12p001257 Quercus lobata HOM05D007702 ORTHO05D009736 4.5e-49 199.1 227 52.9
PGSC0003DMG400018255 Solanum tuberosum HOM05D007702 ORTHO05D009736 7.7e-49 198.4 236 50.4
Eucgr.J03180 Eucalyptus grandis HOM05D007702 ORTHO05D009736 1.0e-48 198.0 240 50.0
Thhalv10012117m.g Eutrema salsugineum HOM05D007702 ORTHO05D009736 1.0e-48 198.0 306 41.5
Peaxi162Scf00051g00198 Petunia axillaris HOM05D007702 ORTHO05D009736 1.0e-48 198.0 280 47.1
BcaC08g43279 Brassica carinata HOM05D007702 ORTHO05D009736 2.9e-48 196.4 288 46.5
C06p06290 Brassica napus HOM05D007702 ORTHO05D009736 2.9e-48 196.4 288 46.5
BolC6t35738H Brassica oleracea HOM05D007702 ORTHO05D009736 2.9e-48 196.4 288 46.5
AUR62001339 Chenopodium quinoa HOM05D007702 ORTHO05D009736 2.9e-48 196.4 250 48.0
Sopen01g045260 Solanum pennellii HOM05D007702 ORTHO05D009736 2.9e-48 196.4 240 48.3
DCAR_007958 Daucus carota HOM05D007702 ORTHO05D009736 8.5e-48 194.9 253 46.6
CANSAT54G1387 Cannabis sativa HOM05D007702 ORTHO05D009736 1.4e-47 194.1 232 50.9
CANSAT54G2309 Cannabis sativa HOM05D007702 ORTHO05D009736 1.4e-47 194.1 183 58.5
PGR042G2668 Punica granatum HOM05D007702 ORTHO05D009736 1.9e-47 193.7 147 66.0
Aa31LG10G3400 Aethionema arabicum HOM05D007702 ORTHO05D009736 2.5e-47 193.4 244 46.3
Carub.0001s3998 Capsella rubella HOM05D007702 ORTHO05D009736 4.2e-47 192.6 280 43.6
Sc12g0011180 Simmondsia chinensis HOM05D007715 ORTHO05D009760 4.2e-47 192.6 249 47.4
Aqoxy7G02739 Aquilegia oxysepala HOM05D007702 ORTHO05D009736 5.5e-47 192.2 250 46.8
EL10Ac7g18156 Beta vulgaris HOM05D007702 ORTHO05D009736 5.5e-47 192.2 291 43.0
AUR62025666 Chenopodium quinoa HOM05D007702 ORTHO05D009736 5.5e-47 192.2 260 45.4
FAN14G5785 Fragaria x ananassa HOM05D007715 ORTHO05D009760 5.5e-47 192.2 237 48.1
TAR383G0542 Trochodendron aralioides HOM05D007702 ORTHO05D009736 5.5e-47 192.2 252 46.0
Actinidia21887 Actinidia chinensis HOM05D007702 ORTHO05D009736 7.2e-47 191.8 285 43.2
Ah.08g217790 Amaranthus hybridus HOM05D007702 ORTHO05D009736 7.2e-47 191.8 250 44.4
FAN02G3529 Fragaria x ananassa HOM05D007715 ORTHO05D009760 2.1e-46 190.3 237 47.3
COL.COLO4_31154 Corchorus olitorius HOM05D007702 ORTHO05D009736 2.7e-46 189.9 225 51.6
FAN05G4144 Fragaria x ananassa HOM05D007715 ORTHO05D009760 1.8e-45 187.2 238 47.5
Nn2g12749 Nelumbo nucifera HOM05D007702 ORTHO05D009736 1.8e-45 187.2 218 50.9
Sp1g37800 Schrenkiella parvula HOM05D007702 ORTHO05D009736 2.3e-45 186.8 298 40.9
FvH4_6g36940 Fragaria vesca HOM05D007702 ORTHO05D009736 3.0e-45 186.4 234 47.9
Nitab4.5_0006053g0030 Nicotiana tabacum HOM05D007702 ORTHO05D009736 5.1e-45 185.7 238 47.5
Migut.I01200 Erythranthe guttata HOM05D007702 ORTHO05D009736 1.5e-44 184.1 164 57.9
CARHR041100 Cardamine hirsuta HOM05D007702 ORTHO05D009736 2.0e-44 183.7 240 45.4
Ca_00991_v3 Cicer arietinum L. HOM05D007702 ORTHO05D009736 1.7e-43 180.6 132 65.9
Nitab4.5_0010634g0010 Nicotiana tabacum HOM05D007702 ORTHO05D009736 1.7e-43 180.6 238 47.9
AT1G51080 Arabidopsis thaliana HOM05D007702 ORTHO05D009736 2.2e-43 180.3 239 45.6
THA.LOC104817895 Tarenaya hassleriana HOM05D007702 ORTHO05D009736 2.2e-43 180.3 271 41.3
MBI07_g12934_MAGBIO Magnolia biondii HOM05D007702 ORTHO05D009736 2.8e-43 179.9 192 53.1
GSVIVG01029550001 Vitis vinifera HOM05D007702 ORTHO05D009736 3.7e-43 179.5 250 46.4
Atru.chr1.2666 Acer truncatum HOM05D007702 ORTHO05D009736 4.8e-43 179.1 277 44.0
AL1G58880 Arabidopsis lyrata HOM05D007702 ORTHO05D009736 4.8e-43 179.1 251 45.8
CDE05G1247 Ceratophyllum demersum HOM05D007702 ORTHO05D009736 5.3e-42 175.6 250 45.2
Medtr2g101430 Medicago truncatula HOM05D007702 ORTHO05D009736 5.3e-42 175.6 126 68.3
unitig_748.g7485 Utricularia gibba HOM05D007702 ORTHO05D009736 5.3e-42 175.6 264 41.7
PSO423G0097 Papaver somniferum HOM05D007702 ORTHO05D009736 6.5e-40 168.7 252 44.8
SGA_v2.0_scaffold71G23985 Striga asiatica HOM05D007702 ORTHO05D009736 6.5e-40 168.7 301 40.2
PSO144G0036 Papaver somniferum HOM05D007702 ORTHO05D009736 8.5e-40 168.3 246 44.3
arahy.Tifrunner.gnm1.ann1.TT2UX9 Arachis hypogaea HOM05D007702 ORTHO05D009736 3.2e-39 166.4 165 53.3
ClCG09G001650 Citrullus lanatus HOM05D007702 ORTHO05D009736 2.1e-38 163.7 239 42.3
Psat5g305320 Pisum sativum HOM05D007702 ORTHO05D009736 4.7e-38 162.5 239 42.7
Oeu049633.1 Olea europaea HOM05D007702 ORTHO05D009736 6.1e-38 162.2 223 45.3
TPR.G39495 Trifolium pratense HOM05D007702 ORTHO05D009736 1.4e-37 161.0 135 60.7
MELO3C024282.2 Cucumis melo HOM05D007702 ORTHO05D009736 1.8e-37 160.6 130 63.1
CsaV3_7G033690 Cucumis sativus L. HOM05D007702 ORTHO05D009736 1.8e-37 160.6 130 62.3
CAN.G2401.1 Capsicum annuum HOM05D000005 ORTHO05D000012 8.2e-35 151.8 176 51.1
Lsat_1_v5_gn_1_39381 Lactuca sativa HOM05D007702 ORTHO05D009736 1.1e-34 151.4 129 56.6
ATR1126G014 Amborella trichopoda HOM05D007702 ORTHO05D009736 1.4e-34 151.0 126 57.1
Aa31LG6G10000 Aethionema arabicum HOM05D007702 ORTHO05D009736 1.7e-32 144.1 127 53.5
SalBow6G4959 Salvia bowleyana HOM05D007702 ORTHO05D009736 2.2e-32 143.7 128 58.6
Rhsim08G0250300 Rhododendron simsii HOM05D007702 ORTHO05D009736 5.5e-31 139.0 278 36.3
vmacro18744 Vaccinium macrocarpon HOM05D007702 ORTHO05D009736 6.1e-30 135.6 141 49.6
Os03g0138900 Oryza sativa ssp. japonica HOM05D007702 ORTHO05D009736 4.0e-29 132.9 259 36.3
ECA236G1927 Erigeron canadensis HOM05D007702 ORTHO05D009736 2.6e-28 130.2 238 38.2
Gorai.011G091300 Gossypium raimondii HOM05D007702 ORTHO05D009736 6.3e-27 125.6 234 37.2
FAN09G0474 Fragaria x ananassa HOM05D007715 ORTHO05D009760 7.0e-26 122.1 199 40.2
Aa31LG3G5120 Aethionema arabicum HOM05D007702 ORTHO05D009736 2.5e-23 113.6 159 44.0
Pp3c5_18880 Physcomitrium patens HOM05D007702 ORTHO05D009736 3.2e-23 113.2 241 33.2
Mapoly0020s0094 Marchantia polymorpha HOM05D007702 ORTHO05D009736 4.2e-23 112.8 233 33.5
AagrBONN_evm.TU.Sc2ySwM_228.5746 Anthoceros agrestis HOM05D007702 ORTHO05D009736 1.4e-21 107.8 239 33.9
EL10Ac3g06847 Beta vulgaris HOM05D000495 ORTHO05D009736 1.5e-20 104.4 142 47.2
Zm00001eb230260 Zea mays HOM05D007702 ORTHO05D009736 4.4e-20 102.8 174 40.8
SEGI_14624 Sequoiadendron giganteum HOM05D007702 ORTHO05D009736 2.4e-18 97.1 240 31.7
Dinv37777 Davidia involucrata HOM05D000532 ORTHO05D002745 4.7e-14 82.8 156 40.4
FAN02G1843 Fragaria x ananassa HOM05D007702 ORTHO05D009736 1.0e-13 81.6 148 39.2
FAN10G3703 Fragaria x ananassa HOM05D007702 ORTHO05D009736 4.0e-13 79.7 152 40.1
FAN07G0391 Fragaria x ananassa HOM05D007702 ORTHO05D009736 3.7e-11 73.2 157 36.9
Actinidia21654 Actinidia chinensis HOM05D007715 ORTHO05D009760 6.6e-08 62.4 70 45.7
AL3G14490 Arabidopsis lyrata HOM05D007702 ORTHO05D009736 1.5e-07 61.2 52 53.8


User provided reference genes

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