Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra07G0119300 Salix brachista HOM05D001295 ORTHO05D005319 1.7e-148 529.3 264 100.0
Sabra07G0107500 Salix brachista HOM05D001295 ORTHO05D005319 4.0e-137 491.5 250 98.0
Gohir.D08G098300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 1.8e-76 290.0 256 62.1
Gorai.004G105900 Gossypium raimondii HOM05D001295 ORTHO05D005319 4.0e-76 288.9 256 61.7
TWI15G0408 Tripterygium wilfordii HOM05D001295 ORTHO05D005319 4.0e-76 288.9 263 58.2
GSVIVG01004102001 Vitis vinifera HOM05D001295 ORTHO05D005319 1.5e-75 287.0 252 60.3
Ciclev10021666m.g Citrus clementina HOM05D001295 ORTHO05D005319 1.4e-73 280.4 255 57.6
Actinidia34573 Actinidia chinensis HOM05D001295 ORTHO05D005319 2.0e-72 276.6 257 59.1
Dinv05087 Davidia involucrata HOM05D001295 ORTHO05D005319 2.7e-72 276.2 258 57.0
COL.COLO4_21796 Corchorus olitorius HOM05D001295 ORTHO05D005319 1.7e-71 273.5 251 59.4
Manes.04G047700 Manihot esculenta HOM05D001295 ORTHO05D005319 3.6e-69 265.8 253 56.9
Gohir.A08G092500 Gossypium hirsutum HOM05D001295 ORTHO05D005319 1.4e-68 263.8 256 58.6
TAR633G1947 Trochodendron aralioides HOM05D001295 ORTHO05D005319 1.8e-68 263.5 255 58.8
QL10p051666 Quercus lobata HOM05D001295 ORTHO05D005319 4.0e-68 262.3 249 58.6
Duzib212G0222 Durio zibethinus HOM05D001295 ORTHO05D005319 5.2e-68 261.9 259 55.2
QL10p051312 Quercus lobata HOM05D001295 ORTHO05D005319 8.9e-68 261.2 249 56.6
Prupe.1G199500 Prunus persica HOM05D001295 ORTHO05D005319 1.5e-67 260.4 242 57.9
PGR142G2463 Punica granatum HOM05D001295 ORTHO05D005319 2.0e-67 260.0 244 57.4
Atru.chr4.1272 Acer truncatum HOM05D001295 ORTHO05D005319 2.6e-67 259.6 255 56.1
AUR62023829 Chenopodium quinoa HOM05D001295 ORTHO05D005319 3.4e-67 259.2 252 52.8
Thecc.04G173300 Theobroma cacao HOM05D001295 ORTHO05D005319 7.5e-67 258.1 244 55.7
AUR62002356 Chenopodium quinoa HOM05D001295 ORTHO05D005319 2.2e-66 256.5 250 52.0
Potri.007G132100 Populus trichocarpa HOM05D001295 ORTHO05D005319 2.2e-66 256.5 242 57.0
COL.COLO4_09274 Corchorus olitorius HOM05D001295 ORTHO05D005319 2.9e-66 256.1 244 54.9
Cfa015203 Carpinus fangiana HOM05D001295 ORTHO05D005319 4.9e-66 255.4 245 56.3
Eucgr.H00340 Eucalyptus grandis HOM05D001295 ORTHO05D005319 1.1e-65 254.2 249 55.0
Manes.11G126000 Manihot esculenta HOM05D001295 ORTHO05D005319 1.9e-65 253.4 241 53.5
CiPaw.01G095500 Carya illinoinensis HOM05D001295 ORTHO05D005319 8.6e-63 244.6 241 56.4
Gohir.A02G093300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 1.5e-62 243.8 247 52.6
Lsat_1_v5_gn_3_110661 Lactuca sativa HOM05D001295 ORTHO05D005319 4.3e-62 242.3 251 53.0
MSTRG.4291 Avicennia marina HOM05D001295 ORTHO05D005319 5.6e-62 241.9 256 54.3
Sopen06g029480 Solanum pennellii HOM05D001295 ORTHO05D005319 2.1e-61 240.0 257 53.3
PSO017G5265 Papaver somniferum HOM05D001295 ORTHO05D005319 2.8e-61 239.6 256 51.2
PGSC0003DMG400026920 Solanum tuberosum HOM05D001295 ORTHO05D005319 4.7e-61 238.8 257 52.5
Migut.G01307 Erythranthe guttata HOM05D001295 ORTHO05D005319 1.4e-60 237.3 250 52.0
Sc21g0002910 Simmondsia chinensis HOM05D001295 ORTHO05D005319 3.1e-60 236.1 251 50.6
ATR0743G262 Amborella trichopoda HOM05D001295 ORTHO05D005319 4.0e-60 235.7 250 46.8
Oeu020777.1 Olea europaea HOM05D001295 ORTHO05D005319 5.2e-60 235.3 251 52.6
PSO837G0039 Papaver somniferum HOM05D001295 ORTHO05D005319 5.2e-60 235.3 252 51.6
Aqoxy5G00377 Aquilegia oxysepala HOM05D001295 ORTHO05D005319 8.9e-60 234.6 254 49.6
Gorai.005G126300 Gossypium raimondii HOM05D001295 ORTHO05D005319 8.9e-60 234.6 245 52.2
Solyc06g073130.4 Solanum lycopersicum HOM05D001295 ORTHO05D005319 2.0e-59 233.4 253 52.6
CAN.G65.159 Capsicum annuum HOM05D001295 ORTHO05D005319 3.4e-59 232.6 257 51.0
AL3G12950 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 4.4e-59 232.3 254 52.4
ClCG07G011710 Citrullus lanatus HOM05D001295 ORTHO05D005319 9.8e-59 231.1 250 55.2
Cc03_g12290 Coffea canephora HOM05D001295 ORTHO05D005319 1.3e-58 230.7 244 53.7
CSS0045865 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 2.2e-58 229.9 219 59.8
CSS0006680 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 2.9e-58 229.6 219 59.8
SalBow8G2942 Salvia bowleyana HOM05D001295 ORTHO05D005319 8.3e-58 228.0 264 49.6
Thecc.04G173200 Theobroma cacao HOM05D001295 ORTHO05D005319 1.1e-57 227.6 216 60.6
Hund12401 Selenicereus undatus HOM05D001295 ORTHO05D005319 2.4e-57 226.5 256 50.4
Thhalv10021391m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 3.2e-57 226.1 254 51.6
Lj3g0016601 Lotus japonicus HOM05D001295 ORTHO05D005319 3.2e-57 226.1 255 53.3
CARHR077360 Cardamine hirsuta HOM05D001295 ORTHO05D005319 4.1e-57 225.7 254 51.2
CsaV3_4G002500 Cucumis sativus L. HOM05D001295 ORTHO05D005319 5.4e-57 225.3 253 53.8
HanXRQChr13g0419451 Helianthus annuus HOM05D001295 ORTHO05D005319 5.4e-57 225.3 250 53.6
MD04G1046100 Malus domestica HOM05D001295 ORTHO05D005319 5.4e-57 225.3 246 51.2
Peaxi162Scf00180g00045 Petunia axillaris HOM05D001295 ORTHO05D005319 5.4e-57 225.3 249 50.2
AT3G03320 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 1.2e-56 224.2 254 51.2
FAN24G0827 Fragaria x ananassa HOM05D001295 ORTHO05D005319 6.0e-56 221.9 241 50.2
THA.LOC104820845 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 1.3e-55 220.7 257 51.0
VMungo1080G0958 Vigna mungo HOM05D001295 ORTHO05D005319 1.7e-55 220.3 251 50.6
Carub.0003s0249 Capsella rubella HOM05D001295 ORTHO05D005319 2.3e-55 219.9 256 50.4
Sed0000422 Sechium edule HOM05D001295 ORTHO05D005319 2.3e-55 219.9 250 50.8
FvH4_2g24830 Fragaria vesca HOM05D001295 ORTHO05D005319 3.9e-55 219.2 241 49.8
Phvul.005G154600 Phaseolus vulgaris HOM05D001295 ORTHO05D005319 3.9e-55 219.2 252 49.6
Ca_01246_v3 Cicer arietinum L. HOM05D001295 ORTHO05D005319 8.6e-55 218.0 257 49.0
Nitab4.5_0002553g0060 Nicotiana tabacum HOM05D001295 ORTHO05D005319 2.5e-54 216.5 298 44.6
TPR.G6512 Trifolium pratense HOM05D001295 ORTHO05D005319 2.5e-54 216.5 262 47.7
Glyma.15G028500 Glycine max HOM05D001295 ORTHO05D005319 4.3e-54 215.7 251 50.6
RcHm_v2.0_Chr6g0292651 Rosa chinensis HOM05D001295 ORTHO05D005319 4.3e-54 215.7 241 50.2
A05p43870 Brassica napus HOM05D001295 ORTHO05D005319 1.2e-53 214.2 254 50.4
BraA05t23124Z Brassica rapa HOM05D001295 ORTHO05D005319 1.2e-53 214.2 254 50.0
BcaC05g30303 Brassica carinata HOM05D001295 ORTHO05D005319 2.8e-53 213.0 256 50.0
arahy.Tifrunner.gnm1.ann1.982DXJ Arachis hypogaea HOM05D001295 ORTHO05D005319 3.6e-53 212.6 246 49.2
FAN27G1301 Fragaria x ananassa HOM05D001295 ORTHO05D005319 3.1e-52 209.5 241 49.0
BolC5t35010H Brassica oleracea HOM05D001295 ORTHO05D005319 5.2e-52 208.8 254 49.2
Sp3g02350 Schrenkiella parvula HOM05D001295 ORTHO05D005319 5.2e-52 208.8 254 48.8
MELO3C022439.2 Cucumis melo HOM05D001295 ORTHO05D005319 6.8e-52 208.4 270 41.5
Lj3C135G1 Lonicera japonica HOM05D001295 ORTHO05D005319 6.8e-52 208.4 213 55.9
ClCG06G001010 Citrullus lanatus HOM05D001295 ORTHO05D005319 8.9e-52 208.0 247 44.5
Nn1g09559 Nelumbo nucifera HOM05D001295 ORTHO05D005319 8.9e-52 208.0 183 57.4
C05p63460 Brassica napus HOM05D001295 ORTHO05D005319 1.5e-51 207.2 254 48.0
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 1.5e-51 207.2 247 43.3
DCAR_028425 Daucus carota HOM05D001295 ORTHO05D005319 2.0e-51 206.8 248 49.6
Psat5g290520 Pisum sativum HOM05D001295 ORTHO05D005319 1.3e-50 204.1 250 48.0
Gohir.D02G111400 Gossypium hirsutum HOM05D001295 ORTHO05D005319 2.2e-50 203.4 245 47.3
Lalb_Chr22g0352051 Lupinus albus HOM05D001295 ORTHO05D005319 1.1e-49 201.1 246 48.4
Migut.G01305 Erythranthe guttata HOM05D001295 ORTHO05D005319 3.2e-49 199.5 255 45.9
Medtr2g099125 Medicago truncatula HOM05D001295 ORTHO05D005319 5.4e-49 198.7 260 43.8
Sed0017723 Sechium edule HOM05D001295 ORTHO05D005319 5.4e-49 198.7 243 44.4
FAN15G1214 Fragaria x ananassa HOM05D001295 ORTHO05D005319 7.1e-49 198.4 241 46.5
HPP92_007597 Vanilla planifolia HOM05D001295 ORTHO05D005319 4.6e-48 195.7 252 43.3
Lalb_Chr14g0372571 Lupinus albus HOM05D001295 ORTHO05D005319 7.8e-48 194.9 245 44.9
Aa31LG5G13780 Aethionema arabicum HOM05D001295 ORTHO05D005319 1.0e-47 194.5 271 45.4
arahy.Tifrunner.gnm1.ann1.1HI5HP Arachis hypogaea HOM05D001295 ORTHO05D005319 1.3e-47 194.1 272 44.5
arahy.Tifrunner.gnm1.ann1.CA0DYB Arachis hypogaea HOM05D001295 ORTHO05D005319 3.0e-47 193.0 272 43.8
Ciclev10021418m.g Citrus clementina HOM05D001295 ORTHO05D005319 5.1e-47 192.2 225 50.2
EL10Ac3g06020 Beta vulgaris HOM05D001295 ORTHO05D005319 2.5e-46 189.9 254 47.2
Sabra07G0119200 Salix brachista HOM05D001295 ORTHO05D005319 7.3e-46 188.3 213 49.8
Nitab4.5_0001586g0250 Nicotiana tabacum HOM05D001295 ORTHO05D005319 5.2e-44 182.2 347 34.9
Sabra07G0119100 Salix brachista HOM05D001295 ORTHO05D005319 6.8e-44 181.8 238 45.4
THA.LOC104803837 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 8.9e-44 181.4 271 40.6
Carub.0004s2592 Capsella rubella HOM05D001295 ORTHO05D005319 1.2e-43 181.0 251 41.8
CARHR138550 Cardamine hirsuta HOM05D001295 ORTHO05D005319 9.9e-43 177.9 252 40.9
Thhalv10001762m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 8.4e-42 174.9 246 39.8
Sp4g25550 Schrenkiella parvula HOM05D001295 ORTHO05D005319 2.4e-41 173.3 246 40.7
Aa31LG1G25200 Aethionema arabicum HOM05D001295 ORTHO05D005319 5.4e-41 172.2 244 41.0
ECA240G1882 Erigeron canadensis HOM05D001295 ORTHO05D005319 3.5e-40 169.5 145 57.9
Zm00001eb064040 Zea mays HOM05D001295 ORTHO05D005319 2.3e-39 166.8 249 39.8
BcaB02g08938 Brassica carinata HOM05D001295 ORTHO05D005319 3.0e-39 166.4 246 39.8
Migut.G01326 Erythranthe guttata HOM05D001295 ORTHO05D005319 5.1e-39 165.6 130 61.5
Migut.G01331 Erythranthe guttata HOM05D001295 ORTHO05D005319 5.1e-39 165.6 203 47.3
SGA_v2.0_scaffold12G06175 Striga asiatica HOM05D001295 ORTHO05D005319 6.6e-39 165.2 180 50.6
BcaC02g12392 Brassica carinata HOM05D001295 ORTHO05D005319 2.8e-37 159.8 248 38.7
C04p04470 Brassica napus HOM05D001295 ORTHO05D005319 2.8e-37 159.8 248 38.7
A05p03770 Brassica napus HOM05D001295 ORTHO05D005319 8.1e-37 158.3 247 39.3
AL4G42200 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 1.1e-36 157.9 249 39.0
BolC4t22080H Brassica oleracea HOM05D001295 ORTHO05D005319 1.4e-36 157.5 248 38.3
BraA05t19365Z Brassica rapa HOM05D001295 ORTHO05D005319 5.3e-36 155.6 251 38.2
vmacro00675 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 6.9e-36 155.2 177 46.9
Rhsim09G0020700 Rhododendron simsii HOM05D001295 ORTHO05D005319 9.0e-36 154.8 266 39.5
C01p44730 Brassica napus HOM05D001295 ORTHO05D005319 2.1e-32 143.7 285 34.0
SalBow5G4879 Salvia bowleyana HOM05D001295 ORTHO05D005319 4.6e-32 142.5 175 46.9
Haze_01445 Corylus avellana HOM05D001295 ORTHO05D005319 7.9e-32 141.7 157 49.7
AT2G43465 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 3.9e-31 139.4 208 41.8
Mapoly0209s0009 Marchantia polymorpha HOM05D001295 ORTHO05D005319 9.6e-30 134.8 262 36.6
AagrBONN_evm.TU.Sc2ySwM_228.190 Anthoceros agrestis HOM05D001295 ORTHO05D005319 2.9e-26 123.2 248 33.5
BolC2t06464H Brassica oleracea HOM05D001295 ORTHO05D005319 3.8e-26 122.9 261 33.0
Sabra17G0001700 Salix brachista HOM05D001295 ORTHO05D005319 1.9e-25 120.6 120 58.3
Pp3c13_1370 Physcomitrium patens HOM05D001295 ORTHO05D005319 3.2e-25 119.8 188 39.9
A09p42860 Brassica napus HOM05D001295 ORTHO05D005319 9.3e-25 118.2 223 35.0
vmacro00676 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 5.1e-23 112.5 92 65.2
RhsimUnG0137700 Rhododendron simsii HOM05D001295 ORTHO05D005319 8.7e-23 111.7 88 68.2
SMO337G0100 Selaginella moellendorffii HOM05D001295 ORTHO05D005319 1.8e-20 104.0 122 48.4
Hma1.2p1_0401F.1_g144800 Hydrangea macrophylla HOM05D001295 ORTHO05D005319 2.0e-19 100.5 85 62.4
Lj3A83T16 Lonicera japonica HOM05D001295 ORTHO05D005319 6.5e-18 95.5 113 52.2
Cpa.g.sc9.324 Carica papaya HOM05D001295 ORTHO05D005319 5.5e-17 92.4 63 73.0
unitig_37.g12026 Utricularia gibba HOM05D001295 ORTHO05D005319 1.9e-14 84.0 66 71.2
Sabra17G0015200 Salix brachista HOM05D001295 ORTHO05D005319 1.3e-13 81.3 177 35.6
Lj3g0015879 Lotus japonicus HOM05D001295 ORTHO05D005319 6.9e-12 75.5 86 51.2
MELO3C001160.2 Cucumis melo HOM05D001295 ORTHO05D005319 6.5e-10 68.9 52 67.3
AL4G36180 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 3.2e-09 66.6 127 33.1
Sabra17G0001500 Salix brachista HOM05D001295 ORTHO05D005319 3.2e-09 66.6 69 46.4
Sabra17G0000500 Salix brachista HOM05D001295 ORTHO05D005319 9.3e-09 65.1 69 46.4
MBI07_g05950_MAGBIO Magnolia biondii HOM05D003063 ORTHO05D003242 1.0e-07 61.6 98 36.7


User provided reference genes

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