Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra07G0117600 Salix brachista HOM05D004131 ORTHO05D004778 1.7e-71 273.1 199 100.0
Sabra07G0113200 Salix brachista HOM05D004131 ORTHO05D004778 4.2e-70 268.5 199 98.0
Potri.007G139900 Populus trichocarpa HOM05D004131 ORTHO05D004778 3.4e-64 248.8 199 93.5
Potri.017G010100 Populus trichocarpa HOM05D004131 ORTHO05D004778 2.7e-61 239.2 199 89.4
GSVIVG01038193001 Vitis vinifera HOM05D004131 ORTHO05D004778 3.2e-54 215.7 199 84.9
TWI63G0908 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 2.1e-53 213.0 200 73.5
Sabra17G0009400 Salix brachista HOM05D004131 ORTHO05D004778 2.7e-53 212.6 271 63.8
Ciclev10022332m.g Citrus clementina HOM05D004131 ORTHO05D004778 1.0e-52 210.7 200 83.0
Atru.chr4.1513 Acer truncatum HOM05D004131 ORTHO05D004778 2.3e-52 209.5 211 73.9
Nn7g37517 Nelumbo nucifera HOM05D004131 ORTHO05D004778 5.2e-52 208.4 202 84.2
TWI38G2196 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 1.5e-51 206.8 200 86.0
Cfa021469 Carpinus fangiana HOM05D004131 ORTHO05D004778 3.3e-51 205.7 111 91.0
Migut.G00833 Erythranthe guttata HOM05D004131 ORTHO05D004778 4.4e-51 205.3 201 80.6
Actinidia18408 Actinidia chinensis HOM05D004131 ORTHO05D004778 5.7e-51 204.9 199 75.9
Gorai.011G132700 Gossypium raimondii HOM05D004131 ORTHO05D004778 7.4e-51 204.5 113 92.9
Manes.01G017500 Manihot esculenta HOM05D004131 ORTHO05D004778 9.7e-51 204.1 200 84.5
Duzib268G1863 Durio zibethinus HOM05D004131 ORTHO05D004778 1.7e-50 203.4 113 91.2
Gohir.A10G146200 Gossypium hirsutum HOM05D004131 ORTHO05D004778 1.7e-50 203.4 113 92.0
Gohir.D10G120800 Gossypium hirsutum HOM05D004131 ORTHO05D004778 1.7e-50 203.4 113 92.0
Haze_11173 Corylus avellana HOM05D004131 ORTHO05D004778 4.8e-50 201.8 113 90.3
Haze_11178 Corylus avellana HOM05D004131 ORTHO05D004778 4.8e-50 201.8 113 90.3
Migut.N03052 Erythranthe guttata HOM05D004131 ORTHO05D004778 4.8e-50 201.8 199 75.4
Dinv33225 Davidia involucrata HOM05D004131 ORTHO05D004778 1.4e-49 200.3 199 75.4
TAR636G2398 Trochodendron aralioides HOM05D004131 ORTHO05D004778 2.4e-49 199.5 200 69.5
Dinv18309 Davidia involucrata HOM05D004131 ORTHO05D004778 5.3e-49 198.4 113 90.3
CSS0004184 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 7.0e-49 198.0 200 78.5
MSTRG.24561 Avicennia marina HOM05D004131 ORTHO05D004778 1.6e-48 196.8 199 77.4
Duzib212G0438 Durio zibethinus HOM05D004131 ORTHO05D004778 1.6e-48 196.8 199 80.9
unitig_8.g3637 Utricularia gibba HOM05D004131 ORTHO05D004778 2.0e-48 196.4 111 88.3
FvH4_1g00470 Fragaria vesca HOM05D004131 ORTHO05D004778 2.6e-48 196.1 111 88.3
Lalb_Chr16g0384341 Lupinus albus HOM05D004131 ORTHO05D004778 3.5e-48 195.7 113 85.8
CsaV3_5G040580 Cucumis sativus L. HOM05D004131 ORTHO05D004778 5.9e-48 194.9 202 78.2
Lj4g0014155 Lotus japonicus HOM05D004131 ORTHO05D004778 5.9e-48 194.9 113 85.8
CSS0028329 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 7.7e-48 194.5 199 77.9
CDE08G0022 Ceratophyllum demersum HOM05D004131 ORTHO05D004778 7.7e-48 194.5 203 71.9
FAN28G1052 Fragaria x ananassa HOM05D004131 ORTHO05D004778 7.7e-48 194.5 111 87.4
MD02G1003900 Malus domestica HOM05D004131 ORTHO05D004778 1.0e-47 194.1 201 80.6
PSO675G2278 Papaver somniferum HOM05D004131 ORTHO05D004778 1.3e-47 193.7 114 85.1
COL.COLO4_04655 Corchorus olitorius HOM05D004131 ORTHO05D004778 2.9e-47 192.6 111 89.2
Glyma.07G206100 Glycine max HOM05D004131 ORTHO05D004778 2.9e-47 192.6 111 85.6
Ah.13g073340 Amaranthus hybridus HOM05D004131 ORTHO05D004778 6.5e-47 191.4 111 85.6
Glyma.02G138900 Glycine max HOM05D004131 ORTHO05D004778 8.5e-47 191.0 113 83.2
Ca_18622_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 1.1e-46 190.7 113 82.3
Ca_18628_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 1.1e-46 190.7 113 82.3
Aqoxy2G04165 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 1.5e-46 190.3 113 82.3
FAN26G1335 Fragaria x ananassa HOM05D004131 ORTHO05D004778 3.2e-46 189.1 109 87.2
Lsat_1_v5_gn_7_67880 Lactuca sativa HOM05D004131 ORTHO05D004778 3.2e-46 189.1 206 75.2
RcHm_v2.0_Chr2g0084981 Rosa chinensis HOM05D004131 ORTHO05D004778 4.2e-46 188.7 106 88.7
Phvul.003G059400 Phaseolus vulgaris HOM05D004131 ORTHO05D004778 5.5e-46 188.3 108 86.1
FAN23G0024 Fragaria x ananassa HOM05D004131 ORTHO05D004778 7.2e-46 188.0 106 88.7
MD15G1147200 Malus domestica HOM05D004131 ORTHO05D004778 7.2e-46 188.0 106 88.7
Prupe.7G267400 Prunus persica HOM05D004131 ORTHO05D004778 7.2e-46 188.0 119 82.4
Solyc12g019470.2 Solanum lycopersicum HOM05D004131 ORTHO05D004778 9.4e-46 187.6 200 76.0
CiPaw.01G198800 Carya illinoinensis HOM05D004131 ORTHO05D004778 1.2e-45 187.2 202 80.2
ECA130G0002 Erigeron canadensis HOM05D004131 ORTHO05D004778 1.2e-45 187.2 113 81.4
TPR.G23549 Trifolium pratense HOM05D004131 ORTHO05D004778 1.2e-45 187.2 197 77.7
CAN.G448.4 Capsicum annuum HOM05D004131 ORTHO05D004778 2.1e-45 186.4 201 75.1
MELO3C022231.2 Cucumis melo HOM05D004131 ORTHO05D004778 2.1e-45 186.4 114 82.5
Sopen12g009750 Solanum pennellii HOM05D004131 ORTHO05D004778 2.7e-45 186.0 109 84.4
Lalb_Chr05g0218801 Lupinus albus HOM05D004131 ORTHO05D004778 4.7e-45 185.3 113 82.3
TAR362G1052 Trochodendron aralioides HOM05D004131 ORTHO05D004778 4.7e-45 185.3 111 83.8
HPP92_023727 Vanilla planifolia HOM05D004131 ORTHO05D004778 6.1e-45 184.9 113 82.3
HanXRQChr02g0059071 Helianthus annuus HOM05D004131 ORTHO05D004778 1.0e-44 184.1 104 87.5
Lj6C265T11 Lonicera japonica HOM05D004131 ORTHO05D004778 1.8e-44 183.3 113 81.4
Nitab4.5_0000064g0030 Nicotiana tabacum HOM05D004131 ORTHO05D004778 1.8e-44 183.3 105 86.7
Nitab4.5_0005089g0010 Nicotiana tabacum HOM05D004131 ORTHO05D004778 1.8e-44 183.3 105 86.7
ATR0743G176 Amborella trichopoda HOM05D004131 ORTHO05D004778 3.0e-44 182.6 110 82.7
Medtr4g087630 Medicago truncatula HOM05D004131 ORTHO05D004778 3.0e-44 182.6 108 81.5
CiPaw.02G123300 Carya illinoinensis HOM05D004131 ORTHO05D004778 4.0e-44 182.2 200 78.5
Psat7g119160 Pisum sativum HOM05D004131 ORTHO05D004778 4.0e-44 182.2 106 84.0
Cc03_g14990 Coffea canephora HOM05D004131 ORTHO05D004778 5.2e-44 181.8 111 82.0
PSO017G4173 Papaver somniferum HOM05D004131 ORTHO05D004778 8.8e-44 181.0 107 84.1
Peaxi162Scf00483g00111 Petunia axillaris HOM05D004131 ORTHO05D004778 8.8e-44 181.0 104 86.5
Actinidia28972 Actinidia chinensis HOM05D004131 ORTHO05D004778 1.2e-43 180.6 102 91.2
CANSAT56G2001 Cannabis sativa HOM05D004131 ORTHO05D004778 1.5e-43 180.3 102 86.3
ECA233G3286 Erigeron canadensis HOM05D004131 ORTHO05D004778 1.5e-43 180.3 199 75.4
PGSC0003DMG400005367 Solanum tuberosum HOM05D004131 ORTHO05D004778 1.5e-43 180.3 107 83.2
THA.LOC104804159 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 1.5e-43 180.3 106 85.8
CSS0000211 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 3.3e-43 179.1 102 88.2
CSS0046112 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 3.3e-43 179.1 102 88.2
SalBow3G2571 Salvia bowleyana HOM05D004131 ORTHO05D004778 3.3e-43 179.1 102 86.3
Sp5g03340 Schrenkiella parvula HOM05D004131 ORTHO05D004778 3.3e-43 179.1 199 71.9
SalBow6G7192 Salvia bowleyana HOM05D004131 ORTHO05D004778 5.7e-43 178.3 202 78.2
Thhalv10006256m.g Eutrema salsugineum HOM05D004131 ORTHO05D004778 7.5e-43 177.9 113 80.5
Aa31LG10G14050 Aethionema arabicum HOM05D004131 ORTHO05D004778 9.7e-43 177.6 106 83.0
AT3G59800 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 1.3e-42 177.2 199 72.4
THA.LOC104805841 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 2.2e-42 176.4 106 84.0
AUR62023766 Chenopodium quinoa HOM05D004131 ORTHO05D004778 2.8e-42 176.0 215 65.6
Eucgr.G01598 Eucalyptus grandis HOM05D004131 ORTHO05D004778 3.7e-42 175.6 101 85.1
Eucgr.L00027 Eucalyptus grandis HOM05D004131 ORTHO05D004778 3.7e-42 175.6 101 85.1
MBI07_g36705_MAGBIO Magnolia biondii HOM05D004131 ORTHO05D004778 6.3e-42 174.9 107 82.2
AL5G41850 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 1.1e-41 174.1 113 77.9
arahy.Tifrunner.gnm1.ann1.GY80IK Arachis hypogaea HOM05D004131 ORTHO05D004778 1.4e-41 173.7 135 71.9
BraA04t15927Z Brassica rapa HOM05D004131 ORTHO05D004778 1.4e-41 173.7 204 66.2
Sc13g0007290 Simmondsia chinensis HOM05D004131 ORTHO05D004778 1.4e-41 173.7 101 85.1
Sp4g25870 Schrenkiella parvula HOM05D004131 ORTHO05D004778 1.8e-41 173.3 202 74.8
Hund12374 Selenicereus undatus HOM05D004131 ORTHO05D004778 1.8e-41 173.3 102 82.4
Carub.0004s2633 Capsella rubella HOM05D004131 ORTHO05D004778 2.4e-41 172.9 206 73.8
CARHR138980 Cardamine hirsuta HOM05D004131 ORTHO05D004778 3.1e-41 172.6 205 73.7
A04p02020 Brassica napus HOM05D004131 ORTHO05D004778 5.3e-41 171.8 113 77.9
BcaB02g08209 Brassica carinata HOM05D004131 ORTHO05D004778 9.1e-41 171.0 113 77.0
BcaC02g10087 Brassica carinata HOM05D004131 ORTHO05D004778 9.1e-41 171.0 113 77.0
C04p32910 Brassica napus HOM05D004131 ORTHO05D004778 9.1e-41 171.0 113 77.0
THA.LOC104802336 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 1.2e-40 170.6 105 81.0
Ah.07g202990 Amaranthus hybridus HOM05D004131 ORTHO05D004778 2.0e-40 169.9 102 81.4
EL10Ac3g06119 Beta vulgaris HOM05D004131 ORTHO05D004778 2.7e-40 169.5 104 81.7
BolC4t24854H Brassica oleracea HOM05D004131 ORTHO05D004778 3.5e-40 169.1 109 78.0
Zm00001eb425720 Zea mays HOM05D004131 ORTHO05D004778 5.9e-40 168.3 105 81.9
AUR62002422 Chenopodium quinoa HOM05D004131 ORTHO05D004778 3.8e-39 165.6 115 73.9
BcaB02g08900 Brassica carinata HOM05D004131 ORTHO05D004778 8.5e-39 164.5 108 75.9
BcaC02g12362 Brassica carinata HOM05D004131 ORTHO05D004778 8.5e-39 164.5 108 75.9
C04p04750 Brassica napus HOM05D004131 ORTHO05D004778 8.5e-39 164.5 108 75.9
BolC4t22105H Brassica oleracea HOM05D004131 ORTHO05D004778 8.5e-39 164.5 108 75.9
A05p04000 Brassica napus HOM05D004131 ORTHO05D004778 7.2e-38 161.4 109 74.3
BraA05t19388Z Brassica rapa HOM05D004131 ORTHO05D004778 7.2e-38 161.4 109 74.3
Mapoly0055s0100 Marchantia polymorpha HOM05D004131 ORTHO05D004778 1.0e-36 157.5 113 71.7
Lju470A13T20 Lonicera japonica HOM05D004131 ORTHO05D004778 2.0e-35 153.3 188 50.5
vmacro15701 Vaccinium macrocarpon HOM05D004131 ORTHO05D004778 7.5e-35 151.4 165 54.5
AagrBONN_evm.TU.Sc2ySwM_344.2765 Anthoceros agrestis HOM05D004131 ORTHO05D004778 2.2e-34 149.8 112 67.0
Pp3c3_18840 Physcomitrium patens HOM05D004131 ORTHO05D004778 2.4e-33 146.4 116 68.1
Sed0002263 Sechium edule HOM05D004131 ORTHO05D004778 7.0e-33 144.8 184 67.9
VMungo0251G3663 Vigna mungo HOM05D004131 ORTHO05D004778 2.0e-32 143.3 84 83.3
PGR042G3815 Punica granatum HOM05D004131 ORTHO05D004778 5.9e-32 141.7 80 88.8
Rhsim02G0086100 Rhododendron simsii HOM05D004131 ORTHO05D004778 5.0e-31 138.7 190 46.3
SMO364G0381 Selaginella moellendorffii HOM05D004131 ORTHO05D004778 5.0e-31 138.7 114 62.3
Lju470A13G17 Lonicera japonica HOM05D004131 ORTHO05D004778 1.1e-30 137.5 80 86.2
Aqoxy604s001 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 4.2e-30 135.6 124 62.1
Actinidia11437 Actinidia chinensis HOM05D004131 ORTHO05D004778 2.3e-28 129.8 71 88.7
RhsimUnG0015600 Rhododendron simsii HOM05D004131 ORTHO05D004778 4.4e-27 125.6 224 39.3
AT2G43795 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 4.1e-25 119.0 84 72.6
AL4G42670 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 7.0e-25 118.2 84 71.4
SEGI_19170 Sequoiadendron giganteum HOM05D004131 ORTHO05D004778 1.2e-24 117.5 84 70.2
QL10p058548 Quercus lobata HOM05D004131 ORTHO05D004778 2.0e-24 116.7 65 86.2
QL10p059325 Quercus lobata HOM05D004131 ORTHO05D004778 2.0e-24 116.7 65 86.2
CARHR170140 Cardamine hirsuta HOM05D004131 ORTHO05D004778 7.8e-24 114.8 161 68.9
Oeu050314.3 Olea europaea HOM05D004131 ORTHO05D004778 3.6e-21 105.9 139 51.8
BcaC07g40454 Brassica carinata HOM05D004131 ORTHO05D004778 3.0e-20 102.8 169 63.3
ClCG08G000030 Citrullus lanatus HOM05D004131 ORTHO05D004778 1.2e-19 100.9 111 56.8
Lj6C255T9 Lonicera japonica HOM05D004131 ORTHO05D004778 2.6e-19 99.8 77 70.1
BraA09t40640Z Brassica rapa HOM05D004131 ORTHO05D004778 7.5e-19 98.2 82 63.4
CBR_g6538 Chara braunii HOM05D004131 ORTHO05D004778 2.9e-18 96.3 79 63.3
Cre16.g660850 Chlamydomonas reinhardtii HOM05D004131 ORTHO05D004778 1.1e-17 94.4 114 48.2
Thecc.04G162100 Theobroma cacao HOM05D004131 ORTHO05D004778 2.0e-16 90.1 139 79.9
C08p34760 Brassica napus HOM05D004131 ORTHO05D004778 1.0e-15 87.8 170 37.1
BolC8t51078H Brassica oleracea HOM05D004131 ORTHO05D004778 1.0e-15 87.8 170 37.1
SGA_v2.0_scaffold37G14924 Striga asiatica HOM05D004131 ORTHO05D004778 1.0e-15 87.8 254 45.3
BcaB02g08224 Brassica carinata HOM05D004131 ORTHO05D004778 1.3e-15 87.4 62 69.4
BcaC07g40508 Brassica carinata HOM05D004131 ORTHO05D004778 2.5e-14 83.2 77 58.4
QL10p058544 Quercus lobata HOM05D004131 ORTHO05D004778 5.6e-14 82.0 50 84.0
MSTRG.9725 Avicennia marina HOM05D005043 ORTHO05D000110 7.3e-14 81.6 93 53.8
QL10p059329 Quercus lobata HOM05D004131 ORTHO05D004778 6.2e-13 78.6 137 74.5
Lju470A13T22 Lonicera japonica HOM05D004131 ORTHO05D004778 2.6e-11 73.2 50 80.0
Sed0017538 Sechium edule HOM05D004131 ORTHO05D004778 4.4e-11 72.4 34 91.2
Lalb_Chr23g0275001 Lupinus albus HOM05D004131 ORTHO05D004778 2.7e-08 63.2 121 56.2
Carub.0005s2652 Capsella rubella HOM05D004131 ORTHO05D004778 3.5e-08 62.8 133 68.4
BcaC07g40452 Brassica carinata HOM05D004131 ORTHO05D004778 1.3e-07 60.8 45 71.1
BcaB02g07200 Brassica carinata HOM05D004131 ORTHO05D004778 1.7e-07 60.5 136 58.1
Zm00001eb027620 Zea mays HOM05D002020 ORTHO05D002046 1.9e-06 57.0 34 82.4
Os04g0496600 Oryza sativa ssp. japonica HOM05D004131 ORTHO05D004778 4.3e-06 55.8 26 96.2
MCO01G557 Micromonas commoda HOM05D004131 ORTHO05D004778 9.5e-06 54.7 86 40.7


User provided reference genes

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