Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra07G0115900 Salix brachista HOM05D004821 ORTHO05D005711 5.8e-173 610.9 335 100.0
Potri.007G144900 Populus trichocarpa HOM05D004821 ORTHO05D005711 4.9e-164 581.3 335 95.2
Potri.017G007300 Populus trichocarpa HOM05D004821 ORTHO05D005711 7.1e-147 524.2 297 87.9
Sabra17G0008100 Salix brachista HOM05D004821 ORTHO05D005711 1.3e-143 513.5 298 86.2
Manes.01G010100 Manihot esculenta HOM05D004821 ORTHO05D005711 1.9e-136 489.6 291 79.4
Ciclev10021021m.g Citrus clementina HOM05D004821 ORTHO05D005711 2.5e-136 489.2 301 76.4
MD15G1143200 Malus domestica HOM05D004821 ORTHO05D005711 2.7e-130 469.2 301 73.8
PGR042G3220 Punica granatum HOM05D004821 ORTHO05D005711 3.6e-130 468.8 293 76.1
Cpa.g.sc151.7 Carica papaya HOM05D004821 ORTHO05D005711 7.9e-130 467.6 292 75.7
Thecc.03G204200 Theobroma cacao HOM05D004821 ORTHO05D005711 7.9e-130 467.6 294 74.5
Atru.chr3.1996 Acer truncatum HOM05D004821 ORTHO05D005711 1.4e-129 466.8 294 75.2
arahy.Tifrunner.gnm1.ann1.PJYW2S Arachis hypogaea HOM05D004821 ORTHO05D005711 2.6e-128 462.6 294 73.8
arahy.Tifrunner.gnm1.ann1.TNA3AF Arachis hypogaea HOM05D004821 ORTHO05D005711 2.6e-128 462.6 294 73.8
Cfa008514 Carpinus fangiana HOM05D004821 ORTHO05D005711 2.2e-127 459.5 292 74.0
Haze_11130 Corylus avellana HOM05D004821 ORTHO05D005711 2.2e-127 459.5 292 74.0
MD00G1087400 Malus domestica HOM05D004821 ORTHO05D005711 6.3e-127 458.0 292 73.6
RcHm_v2.0_Chr2g0084461 Rosa chinensis HOM05D004821 ORTHO05D005711 6.3e-127 458.0 298 73.2
Prupe.7G269800 Prunus persica HOM05D004821 ORTHO05D005711 4.1e-126 455.3 301 72.1
CiPaw.01G201700 Carya illinoinensis HOM05D004821 ORTHO05D005711 5.3e-126 454.9 292 73.3
Hund22594 Selenicereus undatus HOM05D004821 ORTHO05D005711 2.0e-125 453.0 292 73.3
Actinidia18397 Actinidia chinensis HOM05D004821 ORTHO05D005711 2.6e-125 452.6 299 72.2
Cc03_g15980 Coffea canephora HOM05D004821 ORTHO05D005711 3.4e-125 452.2 295 73.2
Eucgr.A00428 Eucalyptus grandis HOM05D004821 ORTHO05D005711 3.4e-125 452.2 292 72.9
CANSAT56G1350 Cannabis sativa HOM05D004821 ORTHO05D005711 4.5e-125 451.8 296 72.3
CsaV3_6G037260 Cucumis sativus L. HOM05D004821 ORTHO05D005711 4.5e-125 451.8 293 71.3
COL.COLO4_16819 Corchorus olitorius HOM05D004821 ORTHO05D005711 7.7e-125 451.1 296 73.0
Peaxi162Scf00329g00933 Petunia axillaris HOM05D004821 ORTHO05D005711 1.3e-124 450.3 300 71.3
Duzib205G0343 Durio zibethinus HOM05D004821 ORTHO05D005711 1.7e-124 449.9 318 67.6
Nn1g09422 Nelumbo nucifera HOM05D004821 ORTHO05D005711 6.5e-124 448.0 291 71.8
Gorai.007G016400 Gossypium raimondii HOM05D004821 ORTHO05D005711 8.5e-124 447.6 296 71.3
VMungo1215G0856 Vigna mungo HOM05D004821 ORTHO05D005711 8.5e-124 447.6 302 69.2
Eucgr.A00426 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.9e-123 446.4 292 72.9
Actinidia11430 Actinidia chinensis HOM05D004821 ORTHO05D005711 1.2e-122 443.7 294 73.1
FvH4_1g00191 Fragaria vesca HOM05D004821 ORTHO05D005711 1.2e-122 443.7 292 71.2
Gohir.A11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.2e-122 443.7 296 70.3
Lj4g0002865 Lotus japonicus HOM05D004821 ORTHO05D005711 2.1e-122 443.0 292 71.6
Oeu033086.1 Olea europaea HOM05D004821 ORTHO05D005711 2.7e-122 442.6 295 71.5
PGSC0003DMG400029438 Solanum tuberosum HOM05D004821 ORTHO05D005711 1.0e-121 440.7 296 70.6
ClCG09G014480 Citrullus lanatus HOM05D004821 ORTHO05D005711 1.4e-121 440.3 293 69.6
Solyc04g008520.3 Solanum lycopersicum HOM05D004821 ORTHO05D005711 1.4e-121 440.3 295 70.2
Nitab4.5_0006607g0020 Nicotiana tabacum HOM05D004821 ORTHO05D005711 1.8e-121 439.9 298 69.5
QL10p064358 Quercus lobata HOM05D004821 ORTHO05D005711 5.2e-121 438.3 290 71.4
Sed0001216 Sechium edule HOM05D004821 ORTHO05D005711 8.8e-121 437.6 292 70.2
Hma1.2p1_0872F.1_g231140 Hydrangea macrophylla HOM05D004821 ORTHO05D005711 1.1e-120 437.2 292 71.6
Rhsim09G0003600 Rhododendron simsii HOM05D004821 ORTHO05D005711 1.1e-120 437.2 294 69.4
Sopen04g003670 Solanum pennellii HOM05D004821 ORTHO05D005711 1.1e-120 437.2 296 69.6
CSS0009446 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 2.0e-120 436.4 294 69.4
CSS0027099 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 2.0e-120 436.4 294 69.4
Nitab4.5_0000129g0470 Nicotiana tabacum HOM05D004821 ORTHO05D005711 2.0e-120 436.4 298 69.1
TPR.G5989 Trifolium pratense HOM05D004821 ORTHO05D005711 2.0e-120 436.4 294 69.0
Ah.13g073170 Amaranthus hybridus HOM05D004821 ORTHO05D005711 3.3e-120 435.6 297 70.0
FAN26G2560 Fragaria x ananassa HOM05D004821 ORTHO05D005711 3.3e-120 435.6 292 69.9
FAN26G2598 Fragaria x ananassa HOM05D004821 ORTHO05D005711 3.3e-120 435.6 292 69.9
CiPaw.02G124700 Carya illinoinensis HOM05D004821 ORTHO05D005711 4.4e-120 435.3 292 70.5
Glyma.17G000700 Glycine max HOM05D004821 ORTHO05D005711 5.7e-120 434.9 293 68.9
Psat4g001240 Pisum sativum HOM05D004821 ORTHO05D005711 7.4e-120 434.5 296 67.9
Phvul.003G074500 Phaseolus vulgaris HOM05D004821 ORTHO05D005711 9.7e-120 434.1 302 67.9
Ca_13543_v3 Cicer arietinum L. HOM05D004821 ORTHO05D005711 1.3e-119 433.7 300 67.7
C03p29340 Brassica napus HOM05D004821 ORTHO05D005711 1.7e-119 433.3 294 71.1
A03p24610 Brassica napus HOM05D004821 ORTHO05D005711 6.3e-119 431.4 294 70.7
BraA03t11666Z Brassica rapa HOM05D004821 ORTHO05D005711 6.3e-119 431.4 294 70.7
BcaB01g03351 Brassica carinata HOM05D004821 ORTHO05D005711 8.2e-119 431.0 294 70.4
SGA_v2.0_scaffold12G06219 Striga asiatica HOM05D004821 ORTHO05D005711 8.2e-119 431.0 293 69.6
Carub.0004s2652 Capsella rubella HOM05D004821 ORTHO05D005711 1.1e-118 430.6 296 70.3
Thhalv10001539m.g Eutrema salsugineum HOM05D004821 ORTHO05D005711 2.4e-118 429.5 294 70.4
AL4G42830 Arabidopsis lyrata HOM05D004821 ORTHO05D005711 3.1e-118 429.1 296 69.6
AT2G43950 Arabidopsis thaliana HOM05D004821 ORTHO05D005711 3.1e-118 429.1 296 69.6
CARHR139130 Cardamine hirsuta HOM05D004821 ORTHO05D005711 7.0e-118 427.9 296 69.6
Lj6A619G67 Lonicera japonica HOM05D004821 ORTHO05D005711 1.2e-117 427.2 298 69.5
Aqoxy5G00034 Aquilegia oxysepala HOM05D004821 ORTHO05D005711 1.6e-117 426.8 296 70.6
Sp4g26050 Schrenkiella parvula HOM05D004821 ORTHO05D005711 2.6e-117 426.0 294 69.7
GSVIVG01038250001 Vitis vinifera HOM05D004821 ORTHO05D005711 7.7e-117 424.5 295 67.8
Gohir.A12G247900 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.3e-116 423.7 296 65.9
Gorai.008G266600 Gossypium raimondii HOM05D004821 ORTHO05D005711 1.3e-116 423.7 296 65.9
Aa31LG1G25650 Aethionema arabicum HOM05D004821 ORTHO05D005711 3.8e-116 422.2 294 68.4
Medtr4g134950 Medicago truncatula HOM05D004821 ORTHO05D005711 5.0e-116 421.8 298 66.4
EL10Ac3g06166 Beta vulgaris HOM05D004821 ORTHO05D005711 6.5e-116 421.4 292 67.1
Gohir.D11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 6.5e-116 421.4 296 68.6
BolC3t15281H Brassica oleracea HOM05D004821 ORTHO05D005711 8.5e-116 421.0 307 67.4
Gohir.D12G248600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 8.5e-116 421.0 296 65.2
Thecc.05G001800 Theobroma cacao HOM05D004821 ORTHO05D005711 4.2e-115 418.7 290 68.6
MSTRG.4551 Avicennia marina HOM05D004821 ORTHO05D005711 9.4e-115 417.5 294 67.7
BcaB06g29351 Brassica carinata HOM05D004821 ORTHO05D005711 1.2e-114 417.2 298 67.4
PSO675G6376 Papaver somniferum HOM05D004821 ORTHO05D005711 1.2e-114 417.2 293 68.6
C04p70840 Brassica napus HOM05D004821 ORTHO05D005711 1.4e-113 413.7 297 67.0
THA.LOC104804303 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 1.8e-113 413.3 295 66.4
Lsat_1_v5_gn_7_44620 Lactuca sativa HOM05D004821 ORTHO05D005711 4.0e-113 412.1 295 67.8
BraA04t18773Z Brassica rapa HOM05D004821 ORTHO05D005711 6.7e-113 411.4 296 66.6
MBI10_g16333_MAGBIO Magnolia biondii HOM05D004821 ORTHO05D005711 6.7e-113 411.4 290 68.3
A04p33140 Brassica napus HOM05D004821 ORTHO05D005711 1.2e-112 410.6 296 66.2
PSO732G0644 Papaver somniferum HOM05D004821 ORTHO05D005711 2.0e-112 409.8 287 69.0
THA.LOC104802343 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 2.2e-111 406.4 294 65.6
AUR62002483 Chenopodium quinoa HOM05D004821 ORTHO05D005711 3.7e-111 405.6 343 58.6
Migut.G00920 Erythranthe guttata HOM05D004821 ORTHO05D005711 1.4e-110 403.7 293 65.2
SalBow3G1744 Salvia bowleyana HOM05D004821 ORTHO05D005711 5.9e-109 398.3 333 58.6
BcaB06g29509 Brassica carinata HOM05D004821 ORTHO05D005711 6.5e-108 394.8 294 64.6
Gohir.D08G113600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 6.5e-108 394.8 291 63.9
DCAR_029913 Daucus carota HOM05D004821 ORTHO05D005711 1.1e-107 394.0 295 63.1
Lalb_Chr13g0304481 Lupinus albus HOM05D004821 ORTHO05D005711 1.9e-107 393.3 299 62.2
Gohir.A08G102400 Gossypium hirsutum HOM05D004821 ORTHO05D005711 7.2e-107 391.3 291 63.6
Gorai.004G122500 Gossypium raimondii HOM05D004821 ORTHO05D005711 1.2e-106 390.6 291 63.6
AUR62023709 Chenopodium quinoa HOM05D004821 ORTHO05D005711 2.7e-106 389.4 292 64.4
vmacro00722 Vaccinium macrocarpon HOM05D004821 ORTHO05D005711 6.1e-106 388.3 330 59.4
Migut.N03030 Erythranthe guttata HOM05D004821 ORTHO05D005711 1.2e-104 384.0 293 63.8
MELO3C014389.2 Cucumis melo HOM05D004821 ORTHO05D005711 1.5e-104 383.6 257 67.7
CAN.G458.7 Capsicum annuum HOM05D004821 ORTHO05D005711 2.0e-104 383.3 258 69.8
HanXRQChr03g0094031 Helianthus annuus HOM05D004821 ORTHO05D005711 4.8e-103 378.6 299 63.5
CDE02G4358 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 8.3e-103 377.9 301 59.1
Eucgr.L00828 Eucalyptus grandis HOM05D004821 ORTHO05D005711 9.1e-102 374.4 292 65.1
HPP92_004517 Vanilla planifolia HOM05D004821 ORTHO05D005711 1.6e-98 363.6 296 59.1
TAR362G0479 Trochodendron aralioides HOM05D004821 ORTHO05D005711 6.8e-97 358.2 297 60.3
Duzib084G0132 Durio zibethinus HOM05D004821 ORTHO05D005711 1.8e-94 350.1 296 59.8
unitig_37.g12004 Utricularia gibba HOM05D004821 ORTHO05D005711 4.3e-91 339.0 291 57.4
Os02g0608900 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 6.1e-90 335.1 305 53.8
ATR0743G163 Amborella trichopoda HOM05D004821 ORTHO05D005711 6.8e-89 331.6 286 53.5
ECA232G4673 Erigeron canadensis HOM05D004821 ORTHO05D005711 5.7e-88 328.6 271 63.1
BcaC02g07141 Brassica carinata HOM05D004821 ORTHO05D005711 3.5e-85 319.3 307 56.4
Dinv24752 Davidia involucrata HOM05D004821 ORTHO05D005711 6.2e-82 308.5 215 68.8
Hund12277 Selenicereus undatus HOM05D004821 ORTHO05D005711 6.8e-81 305.1 250 59.6
HPP92_004526 Vanilla planifolia HOM05D004821 ORTHO05D005711 1.1e-78 297.7 252 57.5
Eucgr.D01249 Eucalyptus grandis HOM05D004821 ORTHO05D005711 5.6e-75 285.4 196 69.4
Zm00001eb133840 Zea mays HOM05D004821 ORTHO05D005711 1.1e-73 281.2 351 43.3
Pp3c26_11540 Physcomitrium patens HOM05D004821 ORTHO05D005711 2.6e-72 276.6 287 47.4
Pp3c3_3220 Physcomitrium patens HOM05D004821 ORTHO05D005711 7.1e-70 268.5 287 46.3
SMO119G0235 Selaginella moellendorffii HOM05D004821 ORTHO05D005711 6.0e-69 265.4 288 45.5
Mapoly0065s0080 Marchantia polymorpha HOM05D004821 ORTHO05D005711 1.5e-67 260.8 293 45.4
Eucgr.D01533 Eucalyptus grandis HOM05D004821 ORTHO05D005711 3.3e-67 259.6 198 64.6
Sc25g0003030 Simmondsia chinensis HOM05D004821 ORTHO05D005711 3.4e-64 249.6 266 47.4
AagrBONN_evm.TU.Sc2ySwM_362.2829 Anthoceros agrestis HOM05D004821 ORTHO05D005711 1.9e-59 233.8 260 44.6
Ah.07g203210 Amaranthus hybridus HOM05D004821 ORTHO05D005711 5.6e-59 232.3 159 67.3
RcHm_v2.0_Chr7g0203201 Rosa chinensis HOM05D004821 ORTHO05D005711 6.9e-57 225.3 170 61.8
Zm00001eb246750 Zea mays HOM05D004821 ORTHO05D005711 3.6e-50 203.0 238 45.0
CBR_g30320 Chara braunii HOM05D004821 ORTHO05D005711 3.2e-38 163.3 279 34.8
QL10p064343 Quercus lobata HOM05D004821 ORTHO05D005711 1.8e-36 157.5 84 84.5
FAN07G0128 Fragaria x ananassa HOM05D004821 ORTHO05D005711 7.4e-35 152.1 119 56.3
Oeu053428.1 Olea europaea HOM05D004821 ORTHO05D005711 7.6e-32 142.1 114 62.3
MD09G1202400 Malus domestica HOM05D004821 ORTHO05D005711 2.5e-30 137.1 99 65.7
BcaB04g18803 Brassica carinata HOM05D004821 ORTHO05D005711 4.3e-27 126.3 73 78.1
Ah.07g203220 Amaranthus hybridus HOM05D004821 ORTHO05D005711 1.3e-26 124.8 98 61.2
Actinidia34565 Actinidia chinensis HOM05D004821 ORTHO05D005711 2.8e-26 123.6 68 80.9
BcaC05g24570 Brassica carinata HOM05D000813 ORTHO05D004282 1.2e-24 118.2 76 71.1
C07p46620 Brassica napus HOM05D004821 ORTHO05D005711 2.0e-24 117.5 92 59.8
BolC7t45177H Brassica oleracea HOM05D004821 ORTHO05D005711 2.0e-24 117.5 92 59.8
CDE09G1042 Ceratophyllum demersum HOM05D001480 ORTHO05D001331 5.5e-22 109.4 97 54.6
CARHR257120 Cardamine hirsuta HOM05D004821 ORTHO05D005711 2.1e-21 107.5 87 58.6
Migut.G00919 Erythranthe guttata HOM05D004821 ORTHO05D005711 6.1e-21 105.9 79 59.5
BcaB01g03349 Brassica carinata HOM05D004821 ORTHO05D005711 1.4e-20 104.8 77 64.9
CDE09G1416 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 1.8e-20 104.4 175 36.0
BcaC07g42475 Brassica carinata HOM05D004821 ORTHO05D005711 1.0e-15 88.6 58 72.4
BcaB02g11099 Brassica carinata HOM05D004821 ORTHO05D005711 6.5e-15 85.9 62 62.9
Actinidia39253 Actinidia chinensis HOM05D004821 ORTHO05D005711 3.6e-13 80.1 63 60.3
Hund22592 Selenicereus undatus HOM05D004821 ORTHO05D005711 3.3e-11 73.6 64 59.4
unitig_92.g28210 Utricularia gibba HOM05D003449 ORTHO05D004133 1.3e-10 71.6 47 68.1
TAR362G0528 Trochodendron aralioides HOM05D004821 ORTHO05D005711 4.8e-10 69.7 48 64.6
BcaC06g33352 Brassica carinata HOM05D004821 ORTHO05D005711 1.5e-08 64.7 51 54.9
Os12g0225200 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 1.3e-07 61.6 91 35.2


User provided reference genes

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