Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra07G0108500 Salix brachista HOM05D003822 ORTHO05D004484 3.8e-138 495.0 276 100.0
Sabra07G0120800 Salix brachista HOM05D003822 ORTHO05D004484 3.8e-138 495.0 276 100.0
Potri.017G018400 Populus trichocarpa HOM05D003822 ORTHO05D004484 3.6e-104 382.1 305 73.4
Sabra17G0014400 Salix brachista HOM05D000455 ORTHO05D000434 6.0e-99 364.8 297 76.4
Sabra17G0002300 Salix brachista HOM05D000455 ORTHO05D000434 3.2e-92 342.4 344 66.0
Hma1.2p1_0635F.1_g193140 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 6.8e-87 324.7 309 64.7
Prupe.1G200400 Prunus persica HOM05D003822 ORTHO05D004484 2.0e-86 323.2 304 64.8
QL10p052081 Quercus lobata HOM05D003822 ORTHO05D004484 2.0e-86 323.2 296 65.5
Eucgr.A00039 Eucalyptus grandis HOM05D003822 ORTHO05D004484 3.4e-86 322.4 294 69.0
VMungo1080G0920 Vigna mungo HOM05D003822 ORTHO05D004484 6.4e-85 318.2 289 64.7
Glyma.15G027800 Glycine max HOM05D003822 ORTHO05D004484 1.9e-84 316.6 298 66.1
VMungo1127G1572 Vigna mungo HOM05D003822 ORTHO05D004484 1.2e-83 313.9 281 66.9
Glyma.11G125400 Glycine max HOM05D003822 ORTHO05D004484 1.6e-83 313.5 282 68.1
Glyma.13G346400 Glycine max HOM05D003822 ORTHO05D004484 3.5e-83 312.4 302 65.2
Hma1.2p1_2403F.1_g321420 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 3.5e-83 312.4 310 61.6
Cfa015215 Carpinus fangiana HOM05D003822 ORTHO05D004484 4.6e-83 312.0 309 63.1
FAN08G2486 Fragaria x ananassa HOM05D003822 ORTHO05D004484 2.3e-82 309.7 304 59.9
CiPaw.01G173700 Carya illinoinensis HOM05D003822 ORTHO05D004484 3.0e-82 309.3 299 66.6
Sc19g0002790 Simmondsia chinensis HOM05D003822 ORTHO05D004484 3.0e-82 309.3 293 63.5
TPR.G6564 Trifolium pratense HOM05D003822 ORTHO05D004484 6.6e-82 308.1 303 61.1
Haze_01421 Corylus avellana HOM05D003822 ORTHO05D004484 1.5e-81 307.0 302 61.3
Nn1g09539 Nelumbo nucifera HOM05D003822 ORTHO05D004484 1.9e-81 306.6 290 68.3
COL.COLO4_29926 Corchorus olitorius HOM05D003822 ORTHO05D004484 2.1e-80 303.1 302 63.2
TAR633G2284 Trochodendron aralioides HOM05D003822 ORTHO05D004484 1.4e-79 300.4 278 69.4
FAN18G3379 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.8e-79 300.1 317 59.9
Ciclev10021425m.g Citrus clementina HOM05D003822 ORTHO05D004484 5.2e-79 298.5 291 68.4
Peaxi162Scf00995g00322 Petunia axillaris HOM05D003822 ORTHO05D004484 5.2e-79 298.5 289 61.2
Ah.07g202460 Amaranthus hybridus HOM05D003822 ORTHO05D004484 9.0e-79 297.7 293 62.5
Lalb_Chr24g0396641 Lupinus albus HOM05D003822 ORTHO05D004484 9.0e-79 297.7 323 59.1
arahy.Tifrunner.gnm1.ann1.0NAL6S Arachis hypogaea HOM05D003822 ORTHO05D004484 4.4e-78 295.4 300 65.3
MD04G1046700 Malus domestica HOM05D003822 ORTHO05D004484 5.8e-78 295.0 312 61.2
Gorai.007G162100 Gossypium raimondii HOM05D003822 ORTHO05D004484 7.6e-78 294.7 290 64.8
MSTRG.17947 Avicennia marina HOM05D003822 ORTHO05D004484 9.9e-78 294.3 288 63.5
Gohir.D11G153200 Gossypium hirsutum HOM05D003822 ORTHO05D004484 1.7e-77 293.5 290 64.8
Manes.13G057600 Manihot esculenta HOM05D003822 ORTHO05D004484 1.7e-77 293.5 291 64.9
Thecc.01G205200 Theobroma cacao HOM05D003822 ORTHO05D004484 1.7e-77 293.5 287 67.2
arahy.Tifrunner.gnm1.ann1.1KAH27 Arachis hypogaea HOM05D003822 ORTHO05D004484 2.9e-77 292.7 300 65.0
Nn7g37555 Nelumbo nucifera HOM05D003822 ORTHO05D004484 2.9e-77 292.7 291 64.6
Ca_01239_v3 Cicer arietinum L. HOM05D003822 ORTHO05D004484 3.8e-77 292.4 297 62.3
FAN04G1289 Fragaria x ananassa HOM05D003822 ORTHO05D004484 3.8e-77 292.4 311 60.8
Gohir.A11G145000 Gossypium hirsutum HOM05D003822 ORTHO05D004484 6.4e-77 291.6 290 63.8
CiPaw.02G103400 Carya illinoinensis HOM05D003822 ORTHO05D004484 1.1e-76 290.8 296 65.5
Cc02_g30690 Coffea canephora HOM05D003822 ORTHO05D004484 1.1e-76 290.8 293 62.5
Sed0021377 Sechium edule HOM05D003822 ORTHO05D004484 1.1e-76 290.8 286 68.2
Eucgr.H00681 Eucalyptus grandis HOM05D003822 ORTHO05D004484 5.4e-76 288.5 303 64.7
Lalb_Chr22g0352031 Lupinus albus HOM05D003822 ORTHO05D004484 4.6e-75 285.4 285 63.5
PGR102G0947 Punica granatum HOM05D003822 ORTHO05D004484 4.6e-75 285.4 288 63.2
SGA_v2.0_scaffold77G25327 Striga asiatica HOM05D003822 ORTHO05D004484 7.8e-75 284.6 290 60.0
Phvul.005G155400 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 2.3e-74 283.1 295 63.4
AUR62002363 Chenopodium quinoa HOM05D003822 ORTHO05D004484 3.9e-74 282.3 305 61.0
MELO3C017788.2 Cucumis melo HOM05D003822 ORTHO05D004484 6.6e-74 281.6 300 59.3
Medtr2g099360 Medicago truncatula HOM05D003822 ORTHO05D004484 6.6e-74 281.6 335 54.6
Actinidia23132 Actinidia chinensis HOM05D003822 ORTHO05D004484 8.7e-74 281.2 300 57.3
TWI18G0659 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 1.9e-73 280.0 290 64.5
RcHm_v2.0_Chr7g0230961 Rosa chinensis HOM05D003822 ORTHO05D004484 4.3e-73 278.9 316 58.5
Duzib211G0255 Durio zibethinus HOM05D003822 ORTHO05D004484 5.6e-73 278.5 288 64.9
FvH4_5g32960 Fragaria vesca HOM05D003822 ORTHO05D004484 7.3e-73 278.1 316 56.3
Oeu013421.2 Olea europaea HOM05D003822 ORTHO05D004484 7.3e-73 278.1 303 59.1
THA.LOC104819024 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 9.6e-73 277.7 296 62.2
Nitab4.5_0002641g0020 Nicotiana tabacum HOM05D003822 ORTHO05D004484 1.3e-72 277.3 296 60.8
RcHm_v2.0_Chr1g0340971 Rosa chinensis HOM05D003822 ORTHO05D004484 1.3e-72 277.3 307 56.7
THA.LOC104822456 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 1.6e-72 276.9 287 60.6
TWI36G1391 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 3.6e-72 275.8 287 62.0
TWI36G1709 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 3.6e-72 275.8 287 62.0
Hund03185 Selenicereus undatus HOM05D003822 ORTHO05D004484 8.1e-72 274.6 293 61.1
TAR362G1102 Trochodendron aralioides HOM05D003822 ORTHO05D004484 8.1e-72 274.6 307 57.3
vmacro14674 Vaccinium macrocarpon HOM05D003822 ORTHO05D004484 1.4e-71 273.9 293 59.4
Lj3g0026330 Lotus japonicus HOM05D003822 ORTHO05D004484 2.4e-71 273.1 318 60.4
Nitab4.5_0003952g0050 Nicotiana tabacum HOM05D003822 ORTHO05D004484 2.4e-71 273.1 298 56.4
Duzib133G0954 Durio zibethinus HOM05D003822 ORTHO05D004484 2.0e-70 270.0 287 64.1
CsaV3_4G002560 Cucumis sativus L. HOM05D003822 ORTHO05D004484 2.6e-70 269.6 293 63.5
Lj3g0024368 Lotus japonicus HOM05D003822 ORTHO05D004484 2.6e-70 269.6 282 61.3
Sabra14G0133100 Salix brachista HOM05D003822 ORTHO05D004484 5.8e-70 268.5 292 59.9
Ciclev10016105m.g Citrus clementina HOM05D003822 ORTHO05D004484 7.6e-70 268.1 304 59.9
Solyc06g007700.4 Solanum lycopersicum HOM05D003822 ORTHO05D004484 9.9e-70 267.7 301 57.8
EL10Ac3g06027 Beta vulgaris HOM05D003822 ORTHO05D004484 1.3e-69 267.3 314 52.5
TAR365G1107 Trochodendron aralioides HOM05D003822 ORTHO05D004484 2.9e-69 266.2 276 64.9
Actinidia34522 Actinidia chinensis HOM05D003822 ORTHO05D004484 6.4e-69 265.0 309 55.0
MD00G1127600 Malus domestica HOM05D003822 ORTHO05D004484 6.4e-69 265.0 288 63.2
Sed0005976 Sechium edule HOM05D003822 ORTHO05D004484 1.4e-68 263.8 289 61.6
HanXRQChr10g0281191 Helianthus annuus HOM05D003822 ORTHO05D004484 3.2e-68 262.7 295 56.3
ECA236G4570 Erigeron canadensis HOM05D003822 ORTHO05D004484 7.1e-68 261.5 317 52.7
Dinv28779 Davidia involucrata HOM05D003822 ORTHO05D004484 1.6e-67 260.4 280 64.3
CANSAT56G4141 Cannabis sativa HOM05D003822 ORTHO05D004484 2.1e-67 260.0 318 59.1
ECA248G1190 Erigeron canadensis HOM05D002050 ORTHO05D001949 3.5e-67 259.2 273 54.9
HPP92_015668 Vanilla planifolia HOM05D003822 ORTHO05D004484 1.3e-66 257.3 289 58.8
Aqoxy2G04159 Aquilegia oxysepala HOM05D003822 ORTHO05D004484 2.3e-66 256.5 288 58.7
Duzib138G1354 Durio zibethinus HOM05D003822 ORTHO05D004484 2.3e-66 256.5 304 59.9
Manes.11G127100 Manihot esculenta HOM05D003822 ORTHO05D004484 2.3e-66 256.5 246 67.9
CANSAT11G1915 Cannabis sativa HOM05D003822 ORTHO05D004484 3.9e-66 255.8 315 59.7
Cpa.g.sc8.23 Carica papaya HOM05D003822 ORTHO05D004484 3.9e-66 255.8 297 58.9
Atru.chr6.3488 Acer truncatum HOM05D003822 ORTHO05D004484 2.5e-65 253.1 314 56.4
Peaxi162Scf00372g00722 Petunia axillaris HOM05D003822 ORTHO05D004484 2.5e-65 253.1 290 58.3
Lsat_1_v5_gn_8_98601 Lactuca sativa HOM05D003822 ORTHO05D004484 4.3e-65 252.3 302 56.3
Manes.12G057507 Manihot esculenta HOM05D003822 ORTHO05D004484 5.6e-65 251.9 288 59.7
Manes.12G057905 Manihot esculenta HOM05D003822 ORTHO05D004484 5.6e-65 251.9 288 59.7
HanXRQChr01g0010521 Helianthus annuus HOM05D003822 ORTHO05D004484 9.6e-65 251.1 302 55.3
AT3G07560 Arabidopsis thaliana HOM05D003822 ORTHO05D004484 1.6e-64 250.4 304 54.9
Thhalv10021215m.g Eutrema salsugineum HOM05D003822 ORTHO05D004484 2.1e-64 250.0 307 56.4
Carub.0003s0711 Capsella rubella HOM05D003822 ORTHO05D004484 2.8e-64 249.6 302 54.3
AL3G18900 Arabidopsis lyrata HOM05D003822 ORTHO05D004484 4.8e-64 248.8 303 55.1
PSO017G3256 Papaver somniferum HOM05D003822 ORTHO05D004484 8.1e-64 248.1 317 53.9
PSO837G0022 Papaver somniferum HOM05D003822 ORTHO05D004484 8.1e-64 248.1 317 54.3
BraA05t22796Z Brassica rapa HOM05D003822 ORTHO05D004484 1.4e-63 247.3 297 58.2
Manes.12G058903 Manihot esculenta HOM05D003822 ORTHO05D004484 3.1e-63 246.1 295 58.0
Potri.014G197200 Populus trichocarpa HOM05D003822 ORTHO05D004484 4.0e-63 245.7 306 58.2
Sp3g06480 Schrenkiella parvula HOM05D003822 ORTHO05D004484 4.0e-63 245.7 308 56.2
unitig_22.g5196 Utricularia gibba HOM05D003822 ORTHO05D004484 5.3e-63 245.4 294 57.5
Sopen06g002590 Solanum pennellii HOM05D003822 ORTHO05D004484 3.4e-62 242.7 301 54.8
CDE02G4798 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 4.5e-62 242.3 292 55.8
A05p40650 Brassica napus HOM05D003822 ORTHO05D004484 5.8e-62 241.9 285 57.9
MBI02_g24302_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 1.3e-61 240.7 304 58.2
CDE05G3137 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 3.8e-61 239.2 297 51.5
PGR083G0513 Punica granatum HOM05D003822 ORTHO05D004484 1.9e-60 236.9 294 58.5
BcaB03g14694 Brassica carinata HOM05D003822 ORTHO05D004484 4.2e-60 235.7 308 53.9
CSS0026869 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 4.2e-60 235.7 290 60.3
ClCG07G011660 Citrullus lanatus HOM05D003822 ORTHO05D004484 7.1e-60 235.0 398 44.5
PGSC0003DMG400020658 Solanum tuberosum HOM05D003822 ORTHO05D004484 9.3e-60 234.6 299 56.5
Aa31LG5G18100 Aethionema arabicum HOM05D003822 ORTHO05D004484 1.6e-59 233.8 316 51.3
BcaB04g21287 Brassica carinata HOM05D003822 ORTHO05D004484 3.0e-58 229.6 277 58.1
CAN.G181.49 Capsicum annuum HOM05D003822 ORTHO05D004484 3.3e-57 226.1 298 54.4
C05p59760 Brassica napus HOM05D003822 ORTHO05D004484 5.6e-57 225.3 288 55.2
AUR62023822 Chenopodium quinoa HOM05D003822 ORTHO05D004484 2.1e-56 223.4 285 54.0
ATR0752G090 Amborella trichopoda HOM05D003822 ORTHO05D004484 4.8e-56 222.2 296 52.7
C03p42940 Brassica napus HOM05D003822 ORTHO05D004484 1.8e-55 220.3 312 50.3
BcaC01g04277 Brassica carinata HOM05D003822 ORTHO05D004484 4.0e-55 219.2 307 50.5
BolC5t34630H Brassica oleracea HOM05D003822 ORTHO05D004484 1.2e-54 217.6 311 52.7
A03p35330 Brassica napus HOM05D003822 ORTHO05D004484 5.8e-54 215.3 311 52.4
SGA_v2.0_scaffold95G28678 Striga asiatica HOM05D003822 ORTHO05D004484 5.8e-54 215.3 219 59.8
Os03g0786000 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 1.0e-53 214.5 279 55.9
Zm00001eb059960 Zea mays HOM05D003822 ORTHO05D004484 1.3e-53 214.2 269 56.5
Zm00001eb117520 Zea mays HOM05D003822 ORTHO05D004484 2.9e-53 213.0 282 54.3
Os07g0152800 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 2.7e-51 206.5 288 52.1
BolC3t16562H Brassica oleracea HOM05D003822 ORTHO05D004484 3.5e-51 206.1 310 52.9
Phvul.011G052000 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 3.0e-50 203.0 201 63.2
Migut.N00690 Erythranthe guttata HOM05D003822 ORTHO05D004484 4.3e-49 199.1 303 50.5
BcaC05g29550 Brassica carinata HOM05D003822 ORTHO05D004484 9.7e-49 198.0 289 51.9
Lsat_1_v5_gn_5_175601 Lactuca sativa HOM05D003822 ORTHO05D004484 1.3e-48 197.6 283 52.3
Oeu020438.1 Olea europaea HOM05D003822 ORTHO05D004484 3.7e-48 196.1 205 67.3
SEGI_01562 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 1.2e-46 191.0 315 43.2
SEGI_07594 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 7.7e-46 188.3 308 45.5
Actinidia11655 Actinidia chinensis HOM05D003822 ORTHO05D004484 5.0e-45 185.7 206 66.0
CSS0006211 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 4.2e-44 182.6 208 60.6
Gorai.N001500 Gossypium raimondii HOM05D003822 ORTHO05D004484 4.6e-43 179.1 279 51.3
MBI18_g24478_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 4.6e-43 179.1 251 53.8
Psat5g291600 Pisum sativum HOM05D003822 ORTHO05D004484 6.1e-43 178.7 235 60.0
PGSC0003DMG400020552 Solanum tuberosum HOM05D003822 ORTHO05D004484 6.1e-43 178.7 134 64.9
BraA01t04376Z Brassica rapa HOM05D003822 ORTHO05D004484 4.1e-39 166.0 138 62.3
BolC1t05546H Brassica oleracea HOM05D003822 ORTHO05D004484 6.9e-39 165.2 238 57.1
Lj2C1109G11 Lonicera japonica HOM05D003822 ORTHO05D004484 1.3e-37 161.0 281 47.3
MSTRG.12733 Avicennia marina HOM05D003822 ORTHO05D004484 3.2e-36 156.4 196 57.7
SMO146G0020 Selaginella moellendorffii HOM05D003822 ORTHO05D004484 6.7e-34 148.7 313 39.6
Manes.12G058104 Manihot esculenta HOM05D003822 ORTHO05D004484 8.2e-32 141.7 98 75.5
Pp3c11_19790 Physcomitrium patens HOM05D003822 ORTHO05D004484 7.0e-31 138.7 300 42.0
AagrBONN_evm.TU.Sc2ySwM_368.3329 Anthoceros agrestis HOM05D003822 ORTHO05D004484 9.1e-31 138.3 304 42.1
Mapoly0080s0067 Marchantia polymorpha HOM05D003822 ORTHO05D004484 9.1e-31 138.3 327 44.0
CBR_g38951 Chara braunii HOM05D003822 ORTHO05D004484 3.0e-26 123.2 333 38.7
FAN01G1095 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.5e-25 120.9 266 43.6
unitig_8.g3681 Utricularia gibba HOM05D003822 ORTHO05D004484 1.5e-25 120.9 106 61.3
MSTRG.12731 Avicennia marina HOM05D003822 ORTHO05D004484 4.8e-24 115.9 100 59.0
CSS0030404 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 1.2e-22 111.3 101 63.4
CARHR082240 Cardamine hirsuta HOM05D003822 ORTHO05D004484 1.6e-22 110.9 198 47.0
Atru.chr4.1339 Acer truncatum HOM05D003822 ORTHO05D004484 5.9e-22 109.0 98 63.3
Thecc.04G171800 Theobroma cacao HOM05D003822 ORTHO05D004484 3.2e-20 103.2 67 70.1
Oeu020439.1 Olea europaea HOM05D003822 ORTHO05D004484 4.7e-19 99.4 78 65.4
Gohir.A07G157900 Gossypium hirsutum HOM05D003822 ORTHO05D004484 3.0e-18 96.7 104 54.8
FAN06G0586 Fragaria x ananassa HOM05D003822 ORTHO05D004484 4.0e-18 96.3 103 56.3
FAN10G3558 Fragaria x ananassa HOM05D003822 ORTHO05D046505 2.0e-17 94.0 79 64.6
Hma1.2p1_0161F.1_g071790 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 4.4e-17 92.8 203 40.9
FvH4_7g08180 Fragaria vesca HOM05D003822 ORTHO05D046505 7.5e-17 92.0 78 64.1
Eucgr.C02476 Eucalyptus grandis HOM05D003822 ORTHO05D004484 3.7e-16 89.7 63 71.4
Cre13.g574700 Chlamydomonas reinhardtii HOM05D003822 ORTHO05D004484 3.1e-15 86.7 64 60.9
Eucgr.B03613 Eucalyptus grandis HOM05D003822 ORTHO05D004484 7.0e-15 85.5 72 62.5
CARHR082220 Cardamine hirsuta HOM05D003822 ORTHO05D004484 3.5e-14 83.2 111 45.0
MCO15G241 Micromonas commoda HOM05D003822 ORTHO05D004484 2.9e-13 80.1 297 41.1
CBR_g50337 Chara braunii HOM05D003822 ORTHO05D004484 7.2e-12 75.5 269 38.7
FAN01G2016 Fragaria x ananassa HOM05D003822 ORTHO05D004484 2.3e-10 70.5 44 77.3
Sabra06G0076200 Salix brachista HOM05D003822 ORTHO05D349384 4.0e-10 69.7 69 58.0
SEGI_40649 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 5.2e-10 69.3 97 48.5
SEGI_02285 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 1.5e-09 67.8 91 44.0
ATR0737G020 Amborella trichopoda HOM05D003822 ORTHO05D004484 2.6e-09 67.0 76 51.3
FAN06G2565 Fragaria x ananassa HOM05D003822 ORTHO05D001690 8.3e-08 62.0 80 48.8
SEGI_24544 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 2.0e-06 57.4 97 45.4


User provided reference genes

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