Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra07G0104100 Salix brachista HOM05D004076 ORTHO05D004606 0.0e+00 1260.7 653 100.0
Potri.007G127800 Populus trichocarpa HOM05D004076 ORTHO05D004606 0.0e+00 1078.5 669 86.5
Sabra17G0020100 Salix brachista HOM05D004076 ORTHO05D004606 2.1e-251 872.5 719 68.2
Manes.04G041450 Manihot esculenta HOM05D004076 ORTHO05D004606 4.8e-155 552.4 669 47.7
Cfa015154 Carpinus fangiana HOM05D004076 ORTHO05D004606 3.5e-142 509.6 672 46.0
Hma1.2p1_0639F.1_g194000 Hydrangea macrophylla HOM05D004076 ORTHO05D004606 1.6e-134 484.2 674 45.3
GSVIVG01010749001 Vitis vinifera HOM05D004076 ORTHO05D004606 2.1e-134 483.8 672 44.8
Dinv44195 Davidia involucrata HOM05D004076 ORTHO05D004606 2.5e-132 476.9 647 46.5
TWI63G0993 Tripterygium wilfordii HOM05D004076 ORTHO05D004606 1.2e-126 458.0 660 43.9
Actinidia39854 Actinidia chinensis HOM05D004076 ORTHO05D004606 1.0e-125 454.9 663 44.0
Atru.chr3.1528 Acer truncatum HOM05D004076 ORTHO05D004606 1.4e-125 454.5 602 46.8
MD04G1007700 Malus domestica HOM05D004076 ORTHO05D004606 5.1e-125 452.6 722 41.3
QL10p048538 Quercus lobata HOM05D004076 ORTHO05D004606 2.0e-124 450.7 750 40.7
Duzib212G0448 Durio zibethinus HOM05D004076 ORTHO05D004606 5.7e-124 449.1 670 43.3
Prupe.1G191700 Prunus persica HOM05D004076 ORTHO05D004606 1.7e-123 447.6 613 45.2
TAR633G1822 Trochodendron aralioides HOM05D004076 ORTHO05D004606 2.2e-123 447.2 663 42.7
MELO3C011646.2 Cucumis melo HOM05D004076 ORTHO05D004606 4.5e-121 439.5 673 42.1
FvH4_4g10700 Fragaria vesca HOM05D004076 ORTHO05D004606 1.7e-120 437.6 730 39.2
RcHm_v2.0_Chr4g0407011 Rosa chinensis HOM05D004076 ORTHO05D004606 2.9e-120 436.8 697 41.2
FAN07G2191 Fragaria x ananassa HOM05D004076 ORTHO05D004606 4.7e-118 429.5 730 38.6
Thecc.04G186100 Theobroma cacao HOM05D004076 ORTHO05D004606 6.1e-118 429.1 679 42.0
Sed0018268 Sechium edule HOM05D004076 ORTHO05D004606 1.0e-109 401.7 676 40.4
Rhsim02G0076700 Rhododendron simsii HOM05D004076 ORTHO05D004606 1.4e-109 401.4 714 38.9
Lj3A198G30 Lonicera japonica HOM05D004076 ORTHO05D004606 1.8e-109 401.0 704 39.1
Eucgr.H00375 Eucalyptus grandis HOM05D004076 ORTHO05D004606 2.3e-109 400.6 674 39.0
Lalb_Chr14g0372441 Lupinus albus HOM05D004076 ORTHO05D004606 3.0e-109 400.2 668 38.6
Ca_01262_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 2.6e-108 397.1 664 38.0
Actinidia11304 Actinidia chinensis HOM05D004076 ORTHO05D004606 2.4e-106 390.6 661 41.3
PGR031G3172 Punica granatum HOM05D004076 ORTHO05D004606 1.6e-105 387.9 655 38.6
CsaV3_6G003850 Cucumis sativus L. HOM05D004076 ORTHO05D004606 2.5e-103 380.6 589 43.0
Lalb_Chr01g0003201 Lupinus albus HOM05D004076 ORTHO05D004606 3.2e-103 380.2 666 37.7
Gorai.006G227200 Gossypium raimondii HOM05D004076 ORTHO05D004606 7.2e-103 379.0 668 38.2
arahy.Tifrunner.gnm1.ann1.68X0LC Arachis hypogaea HOM05D004076 ORTHO05D004606 2.1e-102 377.5 660 37.9
Medtr2g098830 Medicago truncatula HOM05D004076 ORTHO05D004606 2.7e-102 377.1 677 36.5
Medtr4g067090 Medicago truncatula HOM05D004076 ORTHO05D004606 2.7e-102 377.1 653 37.8
FAN17G1176 Fragaria x ananassa HOM05D004076 ORTHO05D004606 2.3e-101 374.0 714 37.1
Lj3g0002927 Lotus japonicus HOM05D004076 ORTHO05D004606 3.0e-101 373.6 720 36.7
TPR.G35423 Trifolium pratense HOM05D004076 ORTHO05D004606 2.6e-100 370.5 673 37.0
Gohir.A09G209900 Gossypium hirsutum HOM05D004076 ORTHO05D004606 4.4e-100 369.8 668 37.6
Phvul.011G055000 Phaseolus vulgaris HOM05D004076 ORTHO05D004606 4.4e-100 369.8 686 37.0
VMungo1127G1790 Vigna mungo HOM05D004076 ORTHO05D004606 4.4e-100 369.8 683 37.5
ClCG08G004480 Citrullus lanatus HOM05D004076 ORTHO05D004606 5.7e-100 369.4 844 33.8
FAN12G0055 Fragaria x ananassa HOM05D004076 ORTHO05D004606 2.2e-99 367.5 730 35.8
FAN12G1510 Fragaria x ananassa HOM05D004076 ORTHO05D004606 9.1e-98 362.1 752 34.6
arahy.Tifrunner.gnm1.ann1.KU5ADZ Arachis hypogaea HOM05D004076 ORTHO05D004606 1.2e-97 361.7 647 37.2
CiPaw.01G101100 Carya illinoinensis HOM05D004076 ORTHO05D004606 1.9e-95 354.4 454 45.8
CANSAT78G1401 Cannabis sativa HOM05D004076 ORTHO05D004606 6.1e-94 349.4 666 36.9
EL10Ac3g05923 Beta vulgaris HOM05D004076 ORTHO05D004606 1.4e-93 348.2 760 33.6
arahy.Tifrunner.gnm1.ann1.33ZKBH Arachis hypogaea HOM05D004076 ORTHO05D004606 3.4e-92 343.6 647 36.3
Psat1g007120 Pisum sativum HOM05D004076 ORTHO05D004606 1.7e-91 341.3 831 31.6
Nn1g09697 Nelumbo nucifera HOM05D004076 ORTHO05D004606 6.3e-91 339.3 670 36.3
TPR.G34235 Trifolium pratense HOM05D004076 ORTHO05D004606 3.5e-89 333.6 594 35.7
arahy.Tifrunner.gnm1.ann1.ZR8I8Y Arachis hypogaea HOM05D004076 ORTHO05D004606 7.8e-89 332.4 639 36.5
Psat7g213720 Pisum sativum HOM05D004076 ORTHO05D004606 1.2e-86 325.1 616 34.7
Lj3g0000298 Lotus japonicus HOM05D004076 ORTHO05D004606 1.8e-85 321.2 649 36.4
Nitab4.5_0000313g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 2.3e-85 320.9 675 33.6
THA.LOC104826195 Tarenaya hassleriana HOM05D004076 ORTHO05D004606 2.3e-85 320.9 716 32.5
Glyma.15G030500 Glycine max HOM05D004076 ORTHO05D004606 8.9e-85 318.9 750 32.8
Thhalv10007042m.g Eutrema salsugineum HOM05D004076 ORTHO05D004606 2.0e-84 317.8 657 33.5
AUR62002294 Chenopodium quinoa HOM05D004076 ORTHO05D004606 9.8e-84 315.5 804 31.5
Aa31LG1G8350 Aethionema arabicum HOM05D004076 ORTHO05D004606 1.7e-83 314.7 659 34.4
Ca_20781_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 1.7e-83 314.7 418 42.1
AL1G15900 Arabidopsis lyrata HOM05D004076 ORTHO05D004606 6.4e-83 312.8 667 33.6
Aqoxy7G03601 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 1.2e-81 308.5 762 33.9
CARHR005480 Cardamine hirsuta HOM05D004076 ORTHO05D004606 4.6e-81 306.6 667 33.9
C08p51520 Brassica napus HOM05D004076 ORTHO05D004606 1.1e-79 302.0 660 34.2
BcaC07g42099 Brassica carinata HOM05D004076 ORTHO05D004606 4.3e-79 300.1 656 33.7
Carub.0001s0531 Capsella rubella HOM05D004076 ORTHO05D004606 4.3e-79 300.1 664 33.0
Oeu032957.2 Olea europaea HOM05D004076 ORTHO05D004606 7.3e-79 299.3 691 32.9
Ciclev10020610m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.2e-78 298.5 312 52.6
BolC8t52680H Brassica oleracea HOM05D004076 ORTHO05D004606 4.7e-78 296.6 652 33.4
Haze_01517 Corylus avellana HOM05D004076 ORTHO05D004606 1.4e-77 295.0 273 56.8
Eucgr.G00183 Eucalyptus grandis HOM05D004076 ORTHO05D004606 5.2e-77 293.1 319 52.0
Peaxi162Scf00297g01124 Petunia axillaris HOM05D004076 ORTHO05D004606 5.2e-77 293.1 782 30.3
Ciclev10020801m.g Citrus clementina HOM05D004076 ORTHO05D004606 3.4e-76 290.4 311 52.1
BraA09t42056Z Brassica rapa HOM05D004076 ORTHO05D004606 2.2e-75 287.7 660 33.8
Aqoxy7G02132 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 2.9e-75 287.3 772 32.0
A09p67230 Brassica napus HOM05D004076 ORTHO05D004606 4.9e-75 286.6 660 33.6
Eucgr.G00179 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.2e-73 282.0 327 49.8
MBI08_g23493_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D004606 6.0e-73 279.6 314 48.7
ECA240G0221 Erigeron canadensis HOM05D004076 ORTHO05D004606 1.7e-72 278.1 759 31.1
AT1G05950 Arabidopsis thaliana HOM05D004076 ORTHO05D004606 6.6e-72 276.2 595 34.1
PSO832G3772 Papaver somniferum HOM05D004076 ORTHO05D004606 1.9e-71 274.6 694 32.3
Nitab4.5_0002475g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 1.6e-70 271.6 712 30.5
Cc03_g11440 Coffea canephora HOM05D004076 ORTHO05D004606 4.7e-70 270.0 308 50.3
Lsat_1_v5_gn_3_110821 Lactuca sativa HOM05D004076 ORTHO05D004606 4.7e-70 270.0 665 32.0
DCAR_027539 Daucus carota HOM05D004076 ORTHO05D004606 1.8e-69 268.1 679 33.0
Aqoxy7G02134 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 2.3e-69 267.7 342 47.4
Gohir.D09G203332 Gossypium hirsutum HOM05D004076 ORTHO05D004606 5.2e-69 266.5 312 48.4
Sopen03g040670 Solanum pennellii HOM05D004076 ORTHO05D004606 8.9e-69 265.8 662 33.5
Eucgr.G00188 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.7e-67 261.5 581 33.0
DCAR_031879 Daucus carota HOM05D004076 ORTHO05D004606 2.9e-67 260.8 685 33.1
Eucgr.G00184 Eucalyptus grandis HOM05D004076 ORTHO05D004606 4.9e-67 260.0 300 49.3
Solyc03g121850.3 Solanum lycopersicum HOM05D004076 ORTHO05D004606 1.6e-65 255.0 668 33.1
Medtr2g098730 Medicago truncatula HOM05D004076 ORTHO05D004606 2.7e-65 254.2 346 41.3
Sopen07g034480 Solanum pennellii HOM05D004076 ORTHO05D004606 2.7e-65 254.2 401 39.4
Medtr2g098720 Medicago truncatula HOM05D004076 ORTHO05D004606 4.6e-65 253.4 317 42.9
Medtr2g098710 Medicago truncatula HOM05D004076 ORTHO05D004606 6.0e-65 253.1 393 39.7
Ciclev10023338m.g Citrus clementina HOM05D004076 ORTHO05D004606 2.3e-64 251.1 272 52.2
MSTRG.28249 Avicennia marina HOM05D004076 ORTHO05D004606 3.0e-64 250.8 385 42.1
HanXRQChr03g0090111 Helianthus annuus HOM05D004076 ORTHO05D004606 3.0e-64 250.8 762 30.8
SGA_v2.0_scaffold24G10696 Striga asiatica HOM05D004076 ORTHO05D004606 8.6e-64 249.2 675 30.7
Migut.B01848 Erythranthe guttata HOM05D004076 ORTHO05D004606 1.9e-63 248.1 656 31.4
Lj6A56T29 Lonicera japonica HOM05D004076 ORTHO05D004606 4.3e-63 246.9 356 40.4
Nitab4.5_0009641g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 6.8e-61 239.6 630 31.4
ATR0686G221 Amborella trichopoda HOM05D004076 ORTHO05D004606 1.2e-60 238.8 383 36.8
Peaxi162Scf00297g01121 Petunia axillaris HOM05D004076 ORTHO05D004606 2.6e-60 237.7 303 48.2
SalBow3G0974 Salvia bowleyana HOM05D004076 ORTHO05D004606 1.1e-58 232.3 686 30.3
Sp1g04770 Schrenkiella parvula HOM05D004076 ORTHO05D004606 6.0e-57 226.5 660 28.2
Medtr0002s1280 Medicago truncatula HOM05D004076 ORTHO05D004606 1.7e-56 224.9 320 40.3
SalBow5G1086 Salvia bowleyana HOM05D004076 ORTHO05D004606 5.1e-56 223.4 303 42.2
Nitab4.5_0005003g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 8.7e-56 222.6 648 31.0
COL.COLO4_33468 Corchorus olitorius HOM05D004076 ORTHO05D004606 1.1e-55 222.2 304 43.4
Glyma.12G053033 Glycine max HOM05D004076 ORTHO05D004606 1.8e-53 214.9 283 42.4
Eucgr.G00171 Eucalyptus grandis HOM05D004076 ORTHO05D004606 4.0e-53 213.8 224 51.8
PGSC0003DMG400002575 Solanum tuberosum HOM05D004076 ORTHO05D004606 2.4e-50 204.5 274 47.4
Sc11g0003780 Simmondsia chinensis HOM05D004076 ORTHO05D004606 2.1e-49 201.4 223 50.7
Zm00001eb318340 Zea mays HOM05D004076 ORTHO05D004606 9.9e-44 182.6 673 27.5
Migut.N01559 Erythranthe guttata HOM05D004076 ORTHO05D004606 3.8e-43 180.6 301 37.5
Medtr2g098770 Medicago truncatula HOM05D004076 ORTHO05D004606 4.2e-42 177.2 293 39.6
CDE08G1584 Ceratophyllum demersum HOM05D004076 ORTHO05D004606 9.3e-42 176.0 723 27.2
Cpa.g.sc9.266 Carica papaya HOM05D004076 ORTHO05D004606 1.2e-41 175.6 172 50.0
Glyma.11G128400 Glycine max HOM05D004076 ORTHO05D004606 2.5e-39 167.9 411 32.8
Sed0002856 Sechium edule HOM05D004076 ORTHO05D004606 1.1e-34 152.5 224 41.5
Ciclev10024150m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.2e-33 149.1 188 46.3
Ciclev10024444m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.2e-33 149.1 188 46.3
SEGI_36759 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 8.7e-32 142.9 239 37.2
Haze_01516 Corylus avellana HOM05D004076 ORTHO05D004606 1.5e-31 142.1 282 35.5
COL.COLO4_20907 Corchorus olitorius HOM05D004076 ORTHO05D004606 1.2e-28 132.5 590 27.5
Gohir.D09G203266 Gossypium hirsutum HOM05D004076 ORTHO05D004606 2.5e-26 124.8 175 43.4
Lj6A56G23 Lonicera japonica HOM05D004076 ORTHO05D004606 3.3e-23 114.4 263 30.4
Lj3g0024562 Lotus japonicus HOM05D004076 ORTHO05D004606 3.3e-23 114.4 151 40.4
Os09g0514500 Oryza sativa ssp. japonica HOM05D004076 ORTHO05D004606 7.4e-23 113.2 165 36.4
Lj3g0014411 Lotus japonicus HOM05D004076 ORTHO05D004606 1.4e-21 109.0 508 25.6
Glyma.13G343800 Glycine max HOM05D004076 ORTHO05D004606 1.2e-20 105.9 121 49.6
AUR62015396 Chenopodium quinoa HOM05D004076 ORTHO05D004606 2.6e-20 104.8 178 36.0
Lj8A15T44 Lonicera japonica HOM05D004076 ORTHO05D004606 1.3e-19 102.4 132 43.9
Glyma.12G052967 Glycine max HOM05D004076 ORTHO05D004606 2.9e-19 101.3 320 31.6
BraA09t42055Z Brassica rapa HOM05D004076 ORTHO05D004606 8.8e-16 89.7 156 34.0
BolC8t52678H Brassica oleracea HOM05D004076 ORTHO05D004606 1.1e-15 89.4 151 35.1
BraA09t42054Z Brassica rapa HOM05D004076 ORTHO05D004606 2.5e-15 88.2 159 32.7
MBI08_g23495_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D003073 3.3e-15 87.8 119 42.0
BcaC07g42097 Brassica carinata HOM05D004076 ORTHO05D004606 5.7e-15 87.0 151 34.4
C08p51510 Brassica napus HOM05D004076 ORTHO05D004606 5.7e-15 87.0 151 34.4
BolC8t52679H Brassica oleracea HOM05D004076 ORTHO05D004606 5.7e-15 87.0 151 33.8
A09p67220 Brassica napus HOM05D004076 ORTHO05D004606 2.6e-12 78.2 180 28.9
SHI23539 Sapria himalayana HOM05D004076 ORTHO05D004606 2.6e-12 78.2 76 52.6
Cc03_g11430 Coffea canephora HOM05D004076 ORTHO05D004606 2.2e-06 58.5 84 35.7
FAN22G1497 Fragaria x ananassa HOM05D004076 ORTHO05D004606 2.8e-06 58.2 93 35.5
Lj8A15T43 Lonicera japonica HOM05D004076 ORTHO05D004606 3.7e-06 57.8 83 38.6
BcaC07g42096 Brassica carinata HOM05D000961 ORTHO05D000841 4.8e-06 57.4 90 34.4
arahy.Tifrunner.gnm1.ann1.S79H68 Arachis hypogaea HOM05D004076 ORTHO05D004606 6.3e-06 57.0 139 32.4


User provided reference genes

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