Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra07G0101900 Salix brachista HOM05D000072 ORTHO05D000026 5.0e-66 254.2 122 100.0
Sabra07G0101400 Salix brachista HOM05D000072 ORTHO05D000026 3.0e-50 201.8 108 88.0
Sabra07G0101000 Salix brachista HOM05D005069 ORTHO05D006024 6.2e-48 194.1 109 85.3
Sabra07G0101200 Salix brachista HOM05D000072 ORTHO05D000026 6.8e-47 190.7 108 82.4
Sabra07G0101500 Salix brachista HOM05D000072 ORTHO05D000026 2.0e-46 189.1 108 83.3
Potri.007G126100 Populus trichocarpa HOM05D000072 ORTHO05D000026 3.7e-45 184.9 107 80.4
Potri.007G125200 Populus trichocarpa HOM05D000072 ORTHO05D000026 6.4e-45 184.1 108 79.6
Potri.007G125000 Populus trichocarpa HOM05D000072 ORTHO05D000026 7.8e-43 177.2 108 75.9
Sabra07G0100900 Salix brachista HOM05D010229 ORTHO05D012533 1.2e-40 169.9 90 90.0
Potri.007G125800 Populus trichocarpa HOM05D000072 ORTHO05D000026 8.1e-40 167.2 113 73.5
Sabra07G0102100 Salix brachista HOM05D000072 ORTHO05D000026 5.2e-39 164.5 90 87.8
Potri.007G125450 Populus trichocarpa HOM05D000072 ORTHO05D000026 4.4e-38 161.4 108 73.1
Sabra07G0101600 Salix brachista HOM05D000072 ORTHO05D000026 1.5e-30 136.3 85 75.3
Sabra17G0021500 Salix brachista HOM05D000072 ORTHO05D000026 5.8e-22 107.8 111 49.5
Manes.04G046100 Manihot esculenta HOM05D000072 ORTHO05D000026 7.1e-20 100.9 109 45.9
Sabra17G0022400 Salix brachista HOM05D000072 ORTHO05D000026 9.3e-20 100.5 108 48.1
Manes.04G046101 Manihot esculenta HOM05D000072 ORTHO05D000026 1.2e-19 100.1 110 47.3
Manes.04G046300 Manihot esculenta HOM05D000072 ORTHO05D000026 1.6e-19 99.8 109 45.9
Manes.04G045000 Manihot esculenta HOM05D000072 ORTHO05D000026 2.7e-19 99.0 108 45.4
Manes.04G045516 Manihot esculenta HOM05D000072 ORTHO05D000026 3.5e-19 98.6 109 45.0
Manes.04G045401 Manihot esculenta HOM05D000072 ORTHO05D000026 1.7e-18 96.3 108 44.4
Sabra17G0021900 Salix brachista HOM05D000072 ORTHO05D000026 8.7e-18 94.0 101 47.5
Manes.04G046700 Manihot esculenta HOM05D000072 ORTHO05D000026 2.8e-16 89.0 109 44.0
TAR375G0126 Trochodendron aralioides HOM05D000072 ORTHO05D000026 3.1e-15 85.5 113 40.7
Cfa021379 Carpinus fangiana HOM05D000072 ORTHO05D000026 4.0e-15 85.1 112 42.0
Dinv05653 Davidia involucrata HOM05D000072 ORTHO05D000026 4.0e-15 85.1 127 37.8
Manes.11G116800 Manihot esculenta HOM05D000072 ORTHO05D000026 1.2e-14 83.6 105 41.0
Potri.015G018600 Populus trichocarpa HOM05D000072 ORTHO05D000026 9.9e-14 80.5 122 38.5
TAR629G2854 Trochodendron aralioides HOM05D000072 ORTHO05D000026 9.9e-14 80.5 85 47.1
Lj5C554T7 Lonicera japonica HOM05D000072 ORTHO05D000026 1.3e-13 80.1 98 44.9
QL09p009834 Quercus lobata HOM05D000072 ORTHO05D000026 1.3e-13 80.1 115 40.0
QL09p009971 Quercus lobata HOM05D000072 ORTHO05D000026 1.3e-13 80.1 117 39.3
Dinv05646 Davidia involucrata HOM05D000072 ORTHO05D000026 2.2e-13 79.3 114 37.7
Haze_10143 Corylus avellana HOM05D000072 ORTHO05D000026 4.9e-13 78.2 119 37.0
Prupe.2G047500 Prunus persica HOM05D000072 ORTHO05D000026 4.9e-13 78.2 90 44.4
QL09p009750 Quercus lobata HOM05D000072 ORTHO05D000026 4.9e-13 78.2 118 38.1
Prupe.2G048700 Prunus persica HOM05D000072 ORTHO05D000026 6.4e-13 77.8 117 39.3
Prupe.2G103300 Prunus persica HOM05D000072 ORTHO05D000026 8.4e-13 77.4 120 34.2
MD02G1249300 Malus domestica HOM05D000072 ORTHO05D000026 1.1e-12 77.0 93 45.2
TAR629G1556 Trochodendron aralioides HOM05D000072 ORTHO05D000026 1.4e-12 76.6 85 44.7
Manes.11G117300 Manihot esculenta HOM05D000072 ORTHO05D000026 2.4e-12 75.9 114 39.5
Manes.11G117100 Manihot esculenta HOM05D000072 ORTHO05D000026 4.2e-12 75.1 120 39.2
QL09p010030 Quercus lobata HOM05D000072 ORTHO05D000026 7.1e-12 74.3 116 38.8
Sabra15G0014000 Salix brachista HOM05D000072 ORTHO05D000026 7.1e-12 74.3 117 35.9
MD02G1249700 Malus domestica HOM05D000072 ORTHO05D000026 1.2e-11 73.6 111 39.6
Oeu060619.2 Olea europaea HOM05D000072 ORTHO05D000026 1.2e-11 73.6 107 38.3
Manes.14G007108 Manihot esculenta HOM05D000072 ORTHO05D000026 1.6e-11 73.2 105 38.1
QL09p009937 Quercus lobata HOM05D000072 ORTHO05D000026 2.1e-11 72.8 115 37.4
Rhsim06G0111300 Rhododendron simsii HOM05D000072 ORTHO05D000026 2.7e-11 72.4 126 33.3
Manes.11G116600 Manihot esculenta HOM05D000072 ORTHO05D000026 4.6e-11 71.6 105 35.2
QL09p010111 Quercus lobata HOM05D000072 ORTHO05D000026 4.6e-11 71.6 118 34.7
QL09p010161 Quercus lobata HOM05D000072 ORTHO05D000026 4.6e-11 71.6 112 37.5
TAR629G0877 Trochodendron aralioides HOM05D000072 ORTHO05D000026 4.6e-11 71.6 90 43.3
Cc02_g01730 Coffea canephora HOM05D000072 ORTHO05D000026 6.0e-11 71.2 131 36.6
Nitab4.5_0000825g0100 Nicotiana tabacum HOM05D000072 ORTHO05D000026 1.0e-10 70.5 108 37.0
Thecc.03G195000 Theobroma cacao HOM05D000072 ORTHO05D000026 1.0e-10 70.5 91 45.1
RcHm_v2.0_Chr1g0328281 Rosa chinensis HOM05D000072 ORTHO05D000026 1.8e-10 69.7 111 39.6
SalBow4G0973 Salvia bowleyana HOM05D000072 ORTHO05D000026 1.8e-10 69.7 97 41.2
SalBow4G3098 Salvia bowleyana HOM05D000072 ORTHO05D000026 1.8e-10 69.7 97 41.2
MD02G1250200 Malus domestica HOM05D000072 ORTHO05D000026 2.3e-10 69.3 98 41.8
Nitab4.5_0005600g0010 Nicotiana tabacum HOM05D000072 ORTHO05D000026 2.3e-10 69.3 109 37.6
Oeu041323.1 Olea europaea HOM05D000072 ORTHO05D000026 2.3e-10 69.3 114 34.2
Prupe.2G087800 Prunus persica HOM05D000072 ORTHO05D000026 2.3e-10 69.3 109 39.4
MD07G1070400 Malus domestica HOM05D000072 ORTHO05D000026 3.0e-10 68.9 91 41.8
Manes.04G046616 Manihot esculenta HOM05D000072 ORTHO05D000026 3.0e-10 68.9 95 38.9
Manes.04G046736 Manihot esculenta HOM05D000072 ORTHO05D000026 3.0e-10 68.9 95 38.9
TAR629G2571 Trochodendron aralioides HOM05D000072 ORTHO05D000026 3.0e-10 68.9 87 41.4
Manes.06G158900 Manihot esculenta HOM05D000072 ORTHO05D000026 3.9e-10 68.6 99 36.4
Actinidia34207 Actinidia chinensis HOM05D000072 ORTHO05D000026 5.1e-10 68.2 98 32.7
Cfa016395 Carpinus fangiana HOM05D000072 ORTHO05D000026 6.7e-10 67.8 109 36.7
FvH4_7g04170 Fragaria vesca HOM05D000072 ORTHO05D000026 6.7e-10 67.8 121 37.2
Medtr1g028280 Medicago truncatula HOM05D000072 ORTHO05D000026 6.7e-10 67.8 94 38.3
MD02G1233600 Malus domestica HOM05D000072 ORTHO05D000026 8.7e-10 67.4 87 43.7
MD07G1070000 Malus domestica HOM05D000072 ORTHO05D000026 8.7e-10 67.4 87 43.7
Oeu041050.1 Olea europaea HOM05D000072 ORTHO05D000026 8.7e-10 67.4 105 34.3
TPR.G33344 Trifolium pratense HOM05D000072 ORTHO05D000026 8.7e-10 67.4 95 36.8
Potri.017G009500 Populus trichocarpa HOM05D000072 ORTHO05D000026 1.1e-09 67.0 110 36.4
COL.COLO4_06423 Corchorus olitorius HOM05D000072 ORTHO05D000026 1.9e-09 66.2 124 35.5
Prupe.2G088100 Prunus persica HOM05D000072 ORTHO05D000026 1.9e-09 66.2 94 42.6
MD02G1273500 Malus domestica HOM05D000072 ORTHO05D000026 2.5e-09 65.9 104 38.5
RcHm_v2.0_Chr1g0333611 Rosa chinensis HOM05D000072 ORTHO05D000026 2.5e-09 65.9 99 38.4
TWI75G1532 Tripterygium wilfordii HOM05D000072 ORTHO05D000026 2.5e-09 65.9 96 34.4
Prupe.2G087100 Prunus persica HOM05D000072 ORTHO05D000026 3.3e-09 65.5 85 42.4
Manes.04G045353 Manihot esculenta HOM05D000072 ORTHO05D000026 4.3e-09 65.1 95 37.9
Psat6g038800 Pisum sativum HOM05D000072 ORTHO05D000026 4.3e-09 65.1 94 36.2
Thecc.01G396600 Theobroma cacao HOM05D000072 ORTHO05D000026 4.3e-09 65.1 116 31.9
CANSAT21G0028 Cannabis sativa HOM05D000072 ORTHO05D000026 5.6e-09 64.7 112 34.8
Cc04_g10760 Coffea canephora HOM05D000072 ORTHO05D000026 5.6e-09 64.7 100 40.0
GSVIVG01018533001 Vitis vinifera HOM05D000072 ORTHO05D000026 5.6e-09 64.7 103 39.8
FvH4_7g04150 Fragaria vesca HOM05D000072 ORTHO05D000026 7.4e-09 64.3 111 38.7
Potri.012G002900 Populus trichocarpa HOM05D000072 ORTHO05D000026 7.4e-09 64.3 107 31.8
RcHm_v2.0_Chr1g0328221 Rosa chinensis HOM05D000072 ORTHO05D000026 7.4e-09 64.3 127 33.1
RcHm_v2.0_Chr1g0328501 Rosa chinensis HOM05D000072 ORTHO05D000026 7.4e-09 64.3 105 40.0
FvH4_7g06010 Fragaria vesca HOM05D000072 ORTHO05D000026 1.6e-08 63.2 94 39.4
QL12p039529 Quercus lobata HOM05D000072 ORTHO05D000026 1.6e-08 63.2 99 38.4
Thecc.01G397200 Theobroma cacao HOM05D000072 ORTHO05D000026 1.6e-08 63.2 93 32.3
CANSAT11G1462 Cannabis sativa HOM05D000072 ORTHO05D000026 2.1e-08 62.8 118 35.6
MD02G1246700 Malus domestica HOM05D000072 ORTHO05D000026 2.8e-08 62.4 114 34.2
TAR629G1322 Trochodendron aralioides HOM05D000072 ORTHO05D000026 2.8e-08 62.4 115 32.2
CiPaw.05G197100 Carya illinoinensis HOM05D000072 ORTHO05D000026 3.7e-08 62.0 121 33.9
Cc00_g00630 Coffea canephora HOM05D000072 ORTHO05D000026 3.7e-08 62.0 94 35.1
MD02G1247300 Malus domestica HOM05D000072 ORTHO05D000026 3.7e-08 62.0 88 39.8
FAN05G5605 Fragaria x ananassa HOM05D000072 ORTHO05D000026 4.8e-08 61.6 110 30.9
MD07G1070700 Malus domestica HOM05D000072 ORTHO05D000026 4.8e-08 61.6 85 42.4
FvH4_6g28430 Fragaria vesca HOM05D000072 ORTHO05D000026 6.2e-08 61.2 110 30.9
FAN03G3012 Fragaria x ananassa HOM05D000072 ORTHO05D000026 6.2e-08 61.2 96 33.3
Potri.017G007900 Populus trichocarpa HOM05D000072 ORTHO05D000026 6.2e-08 61.2 136 35.3
FvH4_4g34450 Fragaria vesca HOM05D000072 ORTHO05D000026 8.1e-08 60.8 96 31.2
PGSC0003DMG400010701 Solanum tuberosum HOM05D000072 ORTHO05D000026 8.1e-08 60.8 112 33.9
Thecc.01G396800 Theobroma cacao HOM05D000072 ORTHO05D000026 8.1e-08 60.8 106 34.9
TAR629G3031 Trochodendron aralioides HOM05D000072 ORTHO05D000026 8.1e-08 60.8 81 38.3
Cc00_g00500 Coffea canephora HOM05D000072 ORTHO05D000026 1.1e-07 60.5 135 30.4
FAN14G0319 Fragaria x ananassa HOM05D000072 ORTHO05D000026 1.1e-07 60.5 96 36.5
QL01p008121 Quercus lobata HOM05D000072 ORTHO05D000026 1.1e-07 60.5 120 35.0
RcHm_v2.0_Chr1g0333331 Rosa chinensis HOM05D000072 ORTHO05D000026 1.1e-07 60.5 87 35.6
TPR.G20037 Trifolium pratense HOM05D000072 ORTHO05D000026 1.1e-07 60.5 123 31.7
QL09p009890 Quercus lobata HOM05D000072 ORTHO05D000026 1.4e-07 60.1 112 33.0
CiPaw.05G254700 Carya illinoinensis HOM05D000072 ORTHO05D000026 1.8e-07 59.7 107 36.4
FAN03G1257 Fragaria x ananassa HOM05D000072 ORTHO05D000026 1.8e-07 59.7 122 38.5
FAN03G2173 Fragaria x ananassa HOM05D000072 ORTHO05D000026 1.8e-07 59.7 94 38.3
FAN12G0155 Fragaria x ananassa HOM05D000072 ORTHO05D000026 2.4e-07 59.3 91 33.0
FAN22G1936 Fragaria x ananassa HOM05D000072 ORTHO05D000026 2.4e-07 59.3 114 31.6
Lj2g0005375 Lotus japonicus HOM05D000072 ORTHO05D000026 2.4e-07 59.3 110 35.5
RcHm_v2.0_Chr1g0328371 Rosa chinensis HOM05D000072 ORTHO05D000026 2.4e-07 59.3 90 40.0
arahy.Tifrunner.gnm1.ann1.03NGAM Arachis hypogaea HOM05D000072 ORTHO05D000026 3.1e-07 58.9 90 35.6
arahy.Tifrunner.gnm1.ann1.QYD1P6 Arachis hypogaea HOM05D000072 ORTHO05D000026 3.1e-07 58.9 90 35.6
MD02G1246200 Malus domestica HOM05D000072 ORTHO05D000026 3.1e-07 58.9 92 34.8
TWI18G0005 Tripterygium wilfordii HOM05D000072 ORTHO05D000026 3.1e-07 58.9 96 29.2
MSTRG.8670 Avicennia marina HOM05D000072 ORTHO05D000026 4.0e-07 58.5 117 33.3
CiPaw.05G254500 Carya illinoinensis HOM05D000072 ORTHO05D000026 4.0e-07 58.5 106 33.0
Manes.04G075400 Manihot esculenta HOM05D000072 ORTHO05D000026 4.0e-07 58.5 97 36.1
Oeu041335.2 Olea europaea HOM05D000072 ORTHO05D000026 4.0e-07 58.5 109 31.2
RcHm_v2.0_Chr1g0333351 Rosa chinensis HOM05D000072 ORTHO05D000026 4.0e-07 58.5 94 36.2
FAN07G0463 Fragaria x ananassa HOM05D000072 ORTHO05D000026 5.3e-07 58.2 107 30.8
Peaxi162Scf00550g00421 Petunia axillaris HOM05D000072 ORTHO05D000026 5.3e-07 58.2 112 33.9
TWI75G0666 Tripterygium wilfordii HOM05D000072 ORTHO05D000026 5.3e-07 58.2 96 32.3
FAN03G3445 Fragaria x ananassa HOM05D000072 ORTHO05D000026 6.9e-07 57.8 95 32.6
FAN10G2588 Fragaria x ananassa HOM05D000072 ORTHO05D000026 6.9e-07 57.8 86 33.7
Potri.017G008901 Populus trichocarpa HOM05D000072 ORTHO05D000026 6.9e-07 57.8 115 33.9
Rhsim10G0165500 Rhododendron simsii HOM05D000072 ORTHO05D000026 6.9e-07 57.8 122 35.2
RcHm_v2.0_Chr1g0328591 Rosa chinensis HOM05D000072 ORTHO05D000026 6.9e-07 57.8 95 38.9
PGSC0003DMG400030291 Solanum tuberosum HOM05D000072 ORTHO05D000026 6.9e-07 57.8 117 31.6
MD02G1245700 Malus domestica HOM05D000072 ORTHO05D000026 9.0e-07 57.4 108 34.3
Potri.017G009400 Populus trichocarpa HOM05D000072 ORTHO05D000026 9.0e-07 57.4 135 34.1
FvH4_1g03330 Fragaria vesca HOM05D000072 ORTHO05D000026 1.2e-06 57.0 102 32.4
Cc00_g00560 Coffea canephora HOM05D000072 ORTHO05D000026 1.5e-06 56.6 110 30.0
Cc00_g00650 Coffea canephora HOM05D000072 ORTHO05D000026 1.5e-06 56.6 105 29.5
CANSAT21G0703 Cannabis sativa HOM05D000072 ORTHO05D000026 2.0e-06 56.2 92 38.0
CiPaw.05G255700 Carya illinoinensis HOM05D000072 ORTHO05D000026 2.0e-06 56.2 119 30.3
FvH4_7g20630 Fragaria vesca HOM05D000072 ORTHO05D000026 2.6e-06 55.8 86 33.7
FAN10G3149 Fragaria x ananassa HOM05D000072 ORTHO05D000026 2.6e-06 55.8 87 34.5
FAN10G3322 Fragaria x ananassa HOM05D000072 ORTHO05D000026 2.6e-06 55.8 113 35.4
TPR.G20004 Trifolium pratense HOM05D000072 ORTHO05D000026 2.6e-06 55.8 124 30.6
Ca_12716_v3 Cicer arietinum L. HOM05D000072 ORTHO05D000026 3.4e-06 55.5 120 27.5
FvH4_7g04160 Fragaria vesca HOM05D000072 ORTHO05D000026 3.4e-06 55.5 88 37.5
FAN19G1949 Fragaria x ananassa HOM05D000072 ORTHO05D000026 3.4e-06 55.5 86 31.4
Medtr3g028640 Medicago truncatula HOM05D000072 ORTHO05D000026 3.4e-06 55.5 98 33.7
Rhsim06G0112500 Rhododendron simsii HOM05D000072 ORTHO05D000026 4.5e-06 55.1 109 32.1
CANSAT21G1543 Cannabis sativa HOM05D000072 ORTHO05D000026 5.8e-06 54.7 89 36.0
FAN03G2036 Fragaria x ananassa HOM05D000072 ORTHO05D000026 5.8e-06 54.7 95 37.9
Peaxi162Scf00550g00448 Petunia axillaris HOM05D000072 ORTHO05D000717 5.8e-06 54.7 107 33.6
Prupe.2G088300 Prunus persica HOM05D000072 ORTHO05D000026 5.8e-06 54.7 88 37.5
Rhsim06G0112200 Rhododendron simsii HOM05D000072 ORTHO05D000026 5.8e-06 54.7 124 30.6
Thecc.01G393700 Theobroma cacao HOM05D000072 ORTHO05D000026 5.8e-06 54.7 88 31.8
Oeu022475.1 Olea europaea HOM05D000072 ORTHO05D000026 7.6e-06 54.3 113 31.0
Potri.017G008800 Populus trichocarpa HOM05D000072 ORTHO05D000026 7.6e-06 54.3 117 33.3
SalBow4G0175 Salvia bowleyana HOM05D000072 ORTHO05D000026 7.6e-06 54.3 108 31.5
SalBow4G1353 Salvia bowleyana HOM05D000072 ORTHO05D000026 7.6e-06 54.3 108 31.5
Eucgr.K00337 Eucalyptus grandis HOM05D000072 ORTHO05D000026 1.0e-05 53.9 133 27.1
Nitab4.5_0000023g0420 Nicotiana tabacum HOM05D000072 ORTHO05D000026 1.0e-05 53.9 109 28.4


User provided reference genes

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