Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra07G0100600 Salix brachista HOM05D003174 ORTHO05D003439 3.2e-215 751.5 376 100.0
Potri.007G124300 Populus trichocarpa HOM05D003174 ORTHO05D003439 1.7e-152 543.1 380 76.8
Potri.017G036100 Populus trichocarpa HOM05D003174 ORTHO05D003439 1.8e-93 347.1 278 66.2
TWI15G0304 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 4.4e-39 166.4 259 41.7
TWI15G0472 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 2.2e-38 164.1 258 41.5
Dinv22692 Davidia involucrata HOM05D003174 ORTHO05D003439 2.9e-38 163.7 220 45.5
Ciclev10021601m.g Citrus clementina HOM05D003174 ORTHO05D003439 6.4e-38 162.5 242 43.0
Cfa015779 Carpinus fangiana HOM05D003174 ORTHO05D003439 8.4e-38 162.2 379 34.3
MD04G1038200 Malus domestica HOM05D003174 ORTHO05D003439 1.4e-37 161.4 301 37.5
Atru.chr3.1551 Acer truncatum HOM05D003174 ORTHO05D003439 2.4e-37 160.6 374 34.5
Actinidia35877 Actinidia chinensis HOM05D003174 ORTHO05D003439 5.4e-37 159.5 292 38.7
GSVIVG01013578001 Vitis vinifera HOM05D003174 ORTHO05D003439 6.0e-36 156.0 264 38.3
Haze_00715 Corylus avellana HOM05D003174 ORTHO05D003439 5.1e-35 152.9 380 35.0
Duzib093G0200 Durio zibethinus HOM05D003174 ORTHO05D003439 2.5e-34 150.6 257 37.7
Manes.04G049000 Manihot esculenta HOM05D003174 ORTHO05D003439 2.5e-34 150.6 308 35.7
CiPaw.02G056500 Carya illinoinensis HOM05D003174 ORTHO05D003439 7.3e-34 149.1 344 33.4
Thecc.05G002600 Theobroma cacao HOM05D003174 ORTHO05D003439 1.2e-33 148.3 272 35.7
QL10p045460 Quercus lobata HOM05D003174 ORTHO05D003439 8.1e-33 145.6 267 40.1
THA.LOC104802302 Tarenaya hassleriana HOM05D003174 ORTHO05D003439 2.4e-32 144.1 169 46.7
Gohir.A08G074200 Gossypium hirsutum HOM05D003174 ORTHO05D003439 1.5e-31 141.4 307 35.8
TAR629G3457 Trochodendron aralioides HOM05D003174 ORTHO05D003439 4.4e-31 139.8 235 40.4
Gorai.004G087600 Gossypium raimondii HOM05D003174 ORTHO05D003439 9.9e-31 138.7 307 34.9
COL.COLO4_20117 Corchorus olitorius HOM05D003174 ORTHO05D003439 1.3e-30 138.3 267 37.1
Gohir.D08G083400 Gossypium hirsutum HOM05D003174 ORTHO05D003439 1.7e-30 137.9 281 35.6
Nitab4.5_0004701g0030 Nicotiana tabacum HOM05D003174 ORTHO05D003439 4.9e-30 136.3 347 32.0
Sopen04g007790 Solanum pennellii HOM05D003174 ORTHO05D003439 6.4e-30 136.0 363 31.7
Nitab4.5_0000847g0080 Nicotiana tabacum HOM05D003174 ORTHO05D003439 8.4e-30 135.6 229 37.6
CAN.G74.6 Capsicum annuum HOM05D003174 ORTHO05D003439 1.9e-29 134.4 279 35.8
TAR623G0639 Trochodendron aralioides HOM05D003174 ORTHO05D003439 2.4e-29 134.0 235 40.0
CANSAT01G0457 Cannabis sativa HOM05D003174 ORTHO05D003439 4.2e-29 133.3 160 46.2
Haze_00723 Corylus avellana HOM05D000268 ORTHO05D000261 4.2e-29 133.3 289 36.0
TAR362G1036 Trochodendron aralioides HOM05D003174 ORTHO05D003439 1.6e-28 131.3 343 33.5
Rhsim02G0075700 Rhododendron simsii HOM05D003174 ORTHO05D003439 2.7e-28 130.6 316 33.5
PGR083G2046 Punica granatum HOM05D003174 ORTHO05D003439 6.0e-28 129.4 297 36.7
Hma1.2p1_0324F.1_g125650 Hydrangea macrophylla HOM05D003174 ORTHO05D003439 7.8e-28 129.0 239 35.6
Hma1.2p1_3259F.1_g334646 Hydrangea macrophylla HOM05D003174 ORTHO05D003439 7.8e-28 129.0 239 35.6
RcHm_v2.0_Chr4g0407561 Rosa chinensis HOM05D003174 ORTHO05D003439 3.0e-27 127.1 216 38.0
Solyc04g015710.3 Solanum lycopersicum HOM05D003174 ORTHO05D003439 6.6e-27 125.9 363 30.6
MBI17_g16533_MAGBIO Magnolia biondii HOM05D003174 ORTHO05D003439 1.1e-26 125.2 391 28.4
Sed0019898 Sechium edule HOM05D003174 ORTHO05D003439 1.1e-26 125.2 330 33.0
MELO3C017697.2 Cucumis melo HOM05D003174 ORTHO05D003439 2.5e-26 124.0 299 33.4
Peaxi162Scf00066g01134 Petunia axillaris HOM05D003174 ORTHO05D003439 2.5e-26 124.0 221 38.5
Eucgr.I00627 Eucalyptus grandis HOM05D003174 ORTHO05D003439 3.3e-26 123.6 179 38.5
Nn1g09826 Nelumbo nucifera HOM05D003174 ORTHO05D003439 9.6e-26 122.1 195 40.0
Cc06_g06750 Coffea canephora HOM05D003174 ORTHO05D003439 2.8e-25 120.6 235 37.4
CsaV3_4G003560 Cucumis sativus L. HOM05D003174 ORTHO05D003439 2.4e-24 117.5 204 39.2
BcaC09g49501 Brassica carinata HOM05D003174 ORTHO05D003439 9.0e-24 115.5 177 41.2
BolC1t03544H Brassica oleracea HOM05D003174 ORTHO05D003439 1.5e-23 114.8 177 41.2
BraA01t02958Z Brassica rapa HOM05D001877 ORTHO05D001886 2.0e-23 114.4 159 43.4
ClCG07G015840 Citrullus lanatus HOM05D003174 ORTHO05D003439 3.4e-23 113.6 308 31.8
Sp2g05410 Schrenkiella parvula HOM05D001877 ORTHO05D001886 5.8e-23 112.8 145 44.1
SHI29135 Sapria himalayana HOM05D003174 ORTHO05D003439 9.9e-23 112.1 111 49.5
FAN17G0897 Fragaria x ananassa HOM05D003174 ORTHO05D003439 1.3e-22 111.7 275 32.7
AL2G18170 Arabidopsis lyrata HOM05D003174 ORTHO05D003439 2.2e-22 110.9 143 39.9
FAN07G2661 Fragaria x ananassa HOM05D003174 ORTHO05D003439 3.8e-22 110.2 211 36.5
BcaB04g20191 Brassica carinata HOM05D003174 ORTHO05D003439 6.4e-22 109.4 183 43.2
Aqoxy2G01410 Aquilegia oxysepala HOM05D003174 ORTHO05D003439 8.4e-22 109.0 165 39.4
Aqoxy4G02974 Aquilegia oxysepala HOM05D003051 ORTHO05D003932 8.4e-22 109.0 165 39.4
AT1G58210 Arabidopsis thaliana HOM05D003174 ORTHO05D003439 1.1e-21 108.6 181 36.5
FvH4_4g11320 Fragaria vesca HOM05D003174 ORTHO05D003439 3.2e-21 107.1 210 37.6
CARHR053810 Cardamine hirsuta HOM05D003174 ORTHO05D003439 4.2e-21 106.7 222 33.8
PSO532G0060 Papaver somniferum HOM05D003174 ORTHO05D003439 7.1e-21 105.9 133 42.1
Thhalv10023956m.g Eutrema salsugineum HOM05D001877 ORTHO05D001886 1.6e-20 104.8 106 50.9
PSO541G3184 Papaver somniferum HOM05D003174 ORTHO05D003439 2.1e-20 104.4 133 42.1
Psat2g183360 Pisum sativum HOM05D003174 ORTHO05D003439 4.6e-20 103.2 113 42.5
QL07p031124 Quercus lobata HOM05D003174 ORTHO05D003439 4.6e-20 103.2 115 49.6
QL07p047847 Quercus lobata HOM05D003174 ORTHO05D003439 4.6e-20 103.2 115 49.6
CSS0007124 Camellia sinensis var. sinensis HOM05D003174 ORTHO05D003439 6.0e-20 102.8 141 46.1
Migut.H00512 Erythranthe guttata HOM05D003174 ORTHO05D003439 6.0e-20 102.8 132 43.9
Aa31LG2G10940 Aethionema arabicum HOM05D003174 ORTHO05D003439 1.3e-19 101.7 176 35.2
QL09p046209 Quercus lobata HOM05D003174 ORTHO05D003439 1.3e-19 101.7 111 49.5
Nn2g10415 Nelumbo nucifera HOM05D003174 ORTHO05D003439 2.3e-19 100.9 166 36.1
DCAR_025649 Daucus carota HOM05D003174 ORTHO05D003439 6.7e-19 99.4 363 28.4
Glyma.13G131100 Glycine max HOM05D003174 ORTHO05D003439 6.7e-19 99.4 140 43.6
CDE07G1712 Ceratophyllum demersum HOM05D003174 ORTHO05D003439 8.7e-19 99.0 231 32.0
Lj3g0014619 Lotus japonicus HOM05D003174 ORTHO05D003439 1.1e-18 98.6 109 48.6
Thecc.05G042400 Theobroma cacao HOM05D003174 ORTHO05D003439 1.9e-18 97.8 101 53.5
PSO339G3795 Papaver somniferum HOM05D003174 ORTHO05D003439 3.3e-18 97.1 232 34.1
PSO384G3329 Papaver somniferum HOM05D035235 ORTHO05D003439 3.3e-18 97.1 224 34.4
ECA233G3488 Erigeron canadensis HOM05D003174 ORTHO05D003439 7.4e-18 95.9 276 29.3
Lj1g0011268 Lotus japonicus HOM05D003174 ORTHO05D003439 7.4e-18 95.9 138 39.9
MSTRG.924 Avicennia marina HOM05D003174 ORTHO05D003439 1.3e-17 95.1 114 44.7
Medtr5g040080 Medicago truncatula HOM05D003174 ORTHO05D003439 1.3e-17 95.1 140 38.6
Medtr7g039520 Medicago truncatula HOM05D003174 ORTHO05D003439 1.3e-17 95.1 140 38.6
SGA_v2.0_scaffold6G03139 Striga asiatica HOM05D003174 ORTHO05D003439 1.3e-17 95.1 115 43.5
Gohir.A09G157600 Gossypium hirsutum HOM05D003174 ORTHO05D003439 1.6e-17 94.7 108 48.1
CAN.G97.37 Capsicum annuum HOM05D003174 ORTHO05D003439 2.1e-17 94.4 139 38.8
Migut.C00381 Erythranthe guttata HOM05D003174 ORTHO05D003439 2.1e-17 94.4 353 29.7
Duzib106G0893 Durio zibethinus HOM05D003174 ORTHO05D003439 2.8e-17 94.0 122 47.5
Cfa017411 Carpinus fangiana HOM05D003174 ORTHO05D003439 3.7e-17 93.6 133 41.4
Lj3A970G57 Lonicera japonica HOM05D003174 ORTHO05D003439 3.7e-17 93.6 115 47.0
PGSC0003DMG400027274 Solanum tuberosum HOM05D003174 ORTHO05D003439 3.7e-17 93.6 203 33.5
GSVIVG01034205001 Vitis vinifera HOM05D003174 ORTHO05D003439 3.7e-17 93.6 125 43.2
Actinidia11253 Actinidia chinensis HOM05D003174 ORTHO05D003439 4.8e-17 93.2 152 37.5
Haze_20757 Corylus avellana HOM05D003174 ORTHO05D003439 6.2e-17 92.8 126 41.3
TPR.G21831 Trifolium pratense HOM05D000319 ORTHO05D003439 6.2e-17 92.8 134 38.8
VMungo1127G0815 Vigna mungo HOM05D003174 ORTHO05D003439 6.2e-17 92.8 119 43.7
Ca_04778_v3 Cicer arietinum L. HOM05D003174 ORTHO05D003439 8.1e-17 92.4 109 44.0
Sabra04G0051000 Salix brachista HOM05D003174 ORTHO05D003439 8.1e-17 92.4 148 39.9
TPR.G37089 Trifolium pratense HOM05D003174 ORTHO05D003439 8.1e-17 92.4 134 38.1
unitig_736.g22251 Utricularia gibba HOM05D003174 ORTHO05D003439 8.1e-17 92.4 121 44.6
Gorai.006G174400 Gossypium raimondii HOM05D003174 ORTHO05D003439 1.1e-16 92.0 116 46.6
HanXRQChr13g0395041 Helianthus annuus HOM05D003174 ORTHO05D003439 1.1e-16 92.0 190 34.2
Potri.004G077400 Populus trichocarpa HOM05D003174 ORTHO05D003439 1.1e-16 92.0 117 42.7
Manes.08G078100 Manihot esculenta HOM05D003174 ORTHO05D003439 1.8e-16 91.3 109 49.5
arahy.Tifrunner.gnm1.ann1.6UZP51 Arachis hypogaea HOM05D003174 ORTHO05D003439 2.4e-16 90.9 152 38.2
arahy.Tifrunner.gnm1.ann1.T4VAVP Arachis hypogaea HOM05D003174 ORTHO05D003439 2.4e-16 90.9 121 41.3
arahy.Tifrunner.gnm1.ann1.T81LQ1 Arachis hypogaea HOM05D003174 ORTHO05D003439 2.4e-16 90.9 157 39.5
Phvul.007G157300 Phaseolus vulgaris HOM05D003174 ORTHO05D003439 2.4e-16 90.9 117 45.3
EL10Ac4g08337 Beta vulgaris HOM05D003174 ORTHO05D003439 3.1e-16 90.5 116 39.7
Ciclev10011079m.g Citrus clementina HOM05D003174 ORTHO05D003439 3.1e-16 90.5 224 32.1
arahy.Tifrunner.gnm1.ann1.D9JBU2 Arachis hypogaea HOM05D003174 ORTHO05D003439 4.0e-16 90.1 100 46.0
Sed0000072 Sechium edule HOM05D003174 ORTHO05D003439 4.0e-16 90.1 117 41.0
PGSC0003DMG400008848 Solanum tuberosum HOM05D003174 ORTHO05D003439 4.0e-16 90.1 239 30.1
Eucgr.A00550 Eucalyptus grandis HOM05D003174 ORTHO05D003439 5.3e-16 89.7 143 39.9
Nitab4.5_0004091g0070 Nicotiana tabacum HOM05D003174 ORTHO05D003439 5.3e-16 89.7 157 36.9
Psat0s2930g0040 Pisum sativum HOM05D003174 ORTHO05D003439 6.9e-16 89.4 106 40.6
arahy.Tifrunner.gnm1.ann1.IJS1VI Arachis hypogaea HOM05D003174 ORTHO05D003439 9.0e-16 89.0 152 38.8
arahy.Tifrunner.gnm1.ann1.Y7W1NJ Arachis hypogaea HOM05D003174 ORTHO05D003439 1.2e-15 88.6 152 38.2
Nitab4.5_0000761g0050 Nicotiana tabacum HOM05D003174 ORTHO05D003439 1.2e-15 88.6 122 40.2
SGA_v2.0_scaffold204G41637 Striga asiatica HOM05D003174 ORTHO05D003439 1.2e-15 88.6 165 34.5
MD04G1124900 Malus domestica HOM05D003174 ORTHO05D003439 1.5e-15 88.2 136 40.4
MELO3C003115.2 Cucumis melo HOM05D003174 ORTHO05D003439 2.0e-15 87.8 221 31.2
Lsat_1_v5_gn_2_36541 Lactuca sativa HOM05D003174 ORTHO05D003439 2.0e-15 87.8 201 33.3
Aqoxy4G02973 Aquilegia oxysepala HOM05D003174 ORTHO05D003439 2.6e-15 87.4 107 45.8
PGR004G2807 Punica granatum HOM05D003174 ORTHO05D003439 2.6e-15 87.4 130 38.5
PGSC0003DMG400027275 Solanum tuberosum HOM05D007490 ORTHO05D008750 2.6e-15 87.4 218 33.5
EL10Ac4g08332 Beta vulgaris HOM05D003174 ORTHO05D003439 3.4e-15 87.0 116 40.5
Dinv35623 Davidia involucrata HOM05D003174 ORTHO05D003439 4.5e-15 86.7 121 42.1
Medtr1g069015 Medicago truncatula HOM05D003174 ORTHO05D003439 7.6e-15 85.9 144 40.3
Rhsim05G0189700 Rhododendron simsii HOM05D003174 ORTHO05D003439 7.6e-15 85.9 126 42.1
CsaV3_4G024810 Cucumis sativus L. HOM05D003174 ORTHO05D003439 1.3e-14 85.1 139 36.0
Lalb_Chr06g0170971 Lupinus albus HOM05D003174 ORTHO05D003439 1.3e-14 85.1 128 41.4
Solyc09g010550.4 Solanum lycopersicum HOM05D003174 ORTHO05D003439 1.3e-14 85.1 239 29.3
Peaxi162Scf00165g01840 Petunia axillaris HOM05D003174 ORTHO05D003439 1.7e-14 84.7 95 47.4
arahy.Tifrunner.gnm1.ann1.7EM6TL Arachis hypogaea HOM05D003174 ORTHO05D003439 2.2e-14 84.3 274 32.1
arahy.Tifrunner.gnm1.ann1.FD13B1 Arachis hypogaea HOM05D003174 ORTHO05D003439 2.9e-14 84.0 143 39.2
Cpa.g.sc260.5 Carica papaya HOM05D003174 ORTHO05D003439 2.9e-14 84.0 107 44.9
Sopen09g005270 Solanum pennellii HOM05D003174 ORTHO05D003439 2.9e-14 84.0 239 28.5
Atru.chr3.120 Acer truncatum HOM05D003174 ORTHO05D003439 3.8e-14 83.6 124 41.1
Phvul.011G086100 Phaseolus vulgaris HOM05D003174 ORTHO05D003439 3.8e-14 83.6 101 37.6
Prupe.6G252000 Prunus persica HOM05D003174 ORTHO05D003439 4.9e-14 83.2 147 38.1
HanXRQChr13g0395031 Helianthus annuus HOM05D003174 ORTHO05D003439 6.4e-14 82.8 165 34.5
Medtr1g069020 Medicago truncatula HOM05D003174 ORTHO05D003439 6.4e-14 82.8 106 42.5
HanXRQChr08g0226171 Helianthus annuus HOM05D003174 ORTHO05D003439 1.4e-13 81.6 126 39.7
Sc02g0004510 Simmondsia chinensis HOM05D003174 ORTHO05D003439 1.4e-13 81.6 219 30.6
TPR.G29857 Trifolium pratense HOM05D003174 ORTHO05D003439 1.9e-13 81.3 91 45.1
Ca_27793_v3 Cicer arietinum L. HOM05D003174 ORTHO05D003439 5.5e-13 79.7 96 44.8
COL.COLO4_14835 Corchorus olitorius HOM05D003174 ORTHO05D003439 5.5e-13 79.7 188 35.6
TWI53G0288 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 5.5e-13 79.7 101 45.5
Glyma.09G003000 Glycine max HOM05D003174 ORTHO05D003439 7.1e-13 79.3 109 39.4
CANSAT21G1894 Cannabis sativa HOM05D003174 ORTHO05D003439 9.3e-13 79.0 120 34.2
Os04g0347900 Oryza sativa ssp. japonica HOM05D003174 ORTHO05D003439 1.6e-12 78.2 102 40.2
AUR62043191 Chenopodium quinoa HOM05D003174 ORTHO05D003439 4.6e-12 76.6 136 34.6
AUR62019568 Chenopodium quinoa HOM05D003174 ORTHO05D003439 7.9e-12 75.9 126 34.9
Cc06_g02840 Coffea canephora HOM05D003174 ORTHO05D003439 7.9e-12 75.9 95 45.3
ECA233G2094 Erigeron canadensis HOM05D003174 ORTHO05D003439 5.1e-11 73.2 207 30.4
Glyma.10G043400 Glycine max HOM05D003174 ORTHO05D003439 5.1e-11 73.2 72 50.0
FAN05G2164 Fragaria x ananassa HOM05D003174 ORTHO05D003439 6.7e-11 72.8 108 41.7
FAN14G5980 Fragaria x ananassa HOM05D003174 ORTHO05D003439 6.7e-11 72.8 108 41.7
THA.LOC104816287 Tarenaya hassleriana HOM05D003174 ORTHO05D003439 6.7e-11 72.8 115 37.4
FAN02G1934 Fragaria x ananassa HOM05D003174 ORTHO05D003439 2.5e-10 70.9 146 36.3
HPP92_001613 Vanilla planifolia HOM05D003174 ORTHO05D003439 2.5e-10 70.9 137 36.5
CARHR210840 Cardamine hirsuta HOM05D003174 ORTHO05D003439 4.3e-10 70.1 104 37.5
FAN09G4813 Fragaria x ananassa HOM05D003174 ORTHO05D003439 4.3e-10 70.1 109 34.9
Gohir.D09G152900 Gossypium hirsutum HOM05D003174 ORTHO05D003439 9.6e-10 68.9 75 49.3
RcHm_v2.0_Chr3g0467041 Rosa chinensis HOM05D003174 ORTHO05D003439 1.3e-09 68.6 128 35.9
Carub.0002s0640 Capsella rubella HOM05D003174 ORTHO05D003439 4.8e-09 66.6 130 34.6
TPR.G23103 Trifolium pratense HOM05D003174 ORTHO05D003439 4.8e-09 66.6 75 45.3
SHI12657 Sapria himalayana HOM05D003174 ORTHO05D003439 6.2e-09 66.2 63 52.4
Carub.0006s0132 Capsella rubella HOM05D003174 ORTHO05D003439 8.2e-09 65.9 98 35.7
Thhalv10015290m.g Eutrema salsugineum HOM05D003174 ORTHO05D003439 8.2e-09 65.9 108 33.3
FvH4_6g25230 Fragaria vesca HOM05D003174 ORTHO05D003439 8.2e-09 65.9 108 33.3
AT5G02520 Arabidopsis thaliana HOM05D003174 ORTHO05D003439 3.1e-08 63.9 93 38.7
Eucgr.J00597 Eucalyptus grandis HOM05D003174 ORTHO05D003439 4.0e-08 63.5 98 37.8
Sp6g39990 Schrenkiella parvula HOM05D003174 ORTHO05D003439 4.0e-08 63.5 120 33.3
ATR0019G037 Amborella trichopoda HOM05D003174 ORTHO05D003439 9.0e-08 62.4 105 38.1
FAN05G5174 Fragaria x ananassa HOM05D003174 ORTHO05D003439 9.0e-08 62.4 91 36.3
Zm00001eb310180 Zea mays HOM05D003174 ORTHO05D003439 9.0e-08 62.4 159 28.3
AL6G11780 Arabidopsis lyrata HOM05D003174 ORTHO05D003439 1.5e-07 61.6 93 36.6
Prupe.1G188100 Prunus persica HOM05D003174 ORTHO05D003439 4.5e-07 60.1 205 31.7
BcaB05g21888 Brassica carinata HOM05D003174 ORTHO05D003439 7.6e-07 59.3 215 23.7
SEGI_15530 Sequoiadendron giganteum HOM05D057352 ORTHO05D003439 1.3e-06 58.5 154 27.9
vmacro08698 Vaccinium macrocarpon HOM05D003174 ORTHO05D003439 3.8e-06 57.0 68 44.1


User provided reference genes

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