Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra07G0086700 Salix brachista HOM05D005188 ORTHO05D006153 4.7e-86 321.2 170 100.0
Potri.007G105900 Populus trichocarpa HOM05D005188 ORTHO05D006153 2.4e-74 282.3 175 84.6
Potri.005G063300 Populus trichocarpa HOM05D005188 ORTHO05D006153 1.7e-72 276.2 175 82.9
Sabra05G0052500 Salix brachista HOM05D005188 ORTHO05D006153 7.2e-71 270.8 175 81.1
CANSAT01G0911 Cannabis sativa HOM05D005188 ORTHO05D006153 9.1e-66 253.8 172 77.3
Cfa002897 Carpinus fangiana HOM05D005188 ORTHO05D006153 2.7e-65 252.3 178 76.4
Cpa.g.sc3.345 Carica papaya HOM05D005188 ORTHO05D006153 4.5e-65 251.5 173 74.0
Haze_25240 Corylus avellana HOM05D005188 ORTHO05D006153 1.3e-64 250.0 178 75.3
Gohir.D11G230800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 1.3e-64 250.0 177 75.7
Thecc.01G132900 Theobroma cacao HOM05D005188 ORTHO05D006153 1.3e-64 250.0 177 76.3
Gohir.A11G226800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 3.8e-64 248.4 177 75.1
COL.COLO4_35748 Corchorus olitorius HOM05D005188 ORTHO05D006153 8.5e-64 247.3 176 75.6
TAR381G0300 Trochodendron aralioides HOM05D005188 ORTHO05D006153 1.5e-63 246.5 178 75.8
CiPaw.04G081900 Carya illinoinensis HOM05D005188 ORTHO05D006153 1.9e-63 246.1 179 76.5
CiPaw.03G121400 Carya illinoinensis HOM05D005188 ORTHO05D006153 2.5e-63 245.7 178 75.3
Gohir.A05G384500 Gossypium hirsutum HOM05D005188 ORTHO05D006153 1.6e-62 243.0 175 74.9
Gorai.003G066700 Gossypium raimondii HOM05D005188 ORTHO05D006153 1.6e-62 243.0 184 72.8
Manes.12G156000 Manihot esculenta HOM05D005188 ORTHO05D006153 1.6e-62 243.0 179 76.0
ClCG01G015380 Citrullus lanatus HOM05D005188 ORTHO05D006153 4.7e-62 241.5 175 73.1
TWI75G0084 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 4.7e-62 241.5 174 76.4
QL02p001672 Quercus lobata HOM05D005188 ORTHO05D006153 8.0e-62 240.7 175 72.6
MELO3C008060.2 Cucumis melo HOM05D005188 ORTHO05D006153 1.0e-61 240.4 175 72.6
Gorai.012G035200 Gossypium raimondii HOM05D005188 ORTHO05D006153 1.4e-61 240.0 175 74.3
Hma1.2p1_0476F.1_g160790 Hydrangea macrophylla HOM05D005188 ORTHO05D006153 1.4e-61 240.0 173 72.8
Medtr3g095540 Medicago truncatula HOM05D005188 ORTHO05D006153 1.4e-61 240.0 173 73.4
Dinv24366 Davidia involucrata HOM05D005188 ORTHO05D006153 1.8e-61 239.6 171 74.3
Lj1g0024625 Lotus japonicus HOM05D005188 ORTHO05D006153 1.8e-61 239.6 172 75.0
MBI06_g39404_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 2.3e-61 239.2 176 74.4
CsaV3_6G041600 Cucumis sativus L. HOM05D005188 ORTHO05D006153 4.0e-61 238.4 175 71.4
Lalb_Chr13g0296451 Lupinus albus HOM05D005188 ORTHO05D006153 4.0e-61 238.4 176 71.6
CARHR277950 Cardamine hirsuta HOM05D005188 ORTHO05D006153 1.5e-60 236.5 175 72.6
Phvul.002G269400 Phaseolus vulgaris HOM05D005188 ORTHO05D006153 3.4e-60 235.3 175 72.0
Nn2g12180 Nelumbo nucifera HOM05D005188 ORTHO05D006153 4.4e-60 235.0 176 73.3
PGR008G0006 Punica granatum HOM05D005188 ORTHO05D006153 4.4e-60 235.0 172 72.1
PGR119G0239 Punica granatum HOM05D005188 ORTHO05D006153 4.4e-60 235.0 172 72.1
TPR.G18740 Trifolium pratense HOM05D005188 ORTHO05D006153 4.4e-60 235.0 175 71.4
TWI79G1553 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 4.4e-60 235.0 172 73.3
Ciclev10002687m.g Citrus clementina HOM05D005188 ORTHO05D006153 5.7e-60 234.6 173 72.8
VMungo0251G2948 Vigna mungo HOM05D005188 ORTHO05D006153 5.7e-60 234.6 175 70.3
CDE08G0648 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 2.2e-59 232.6 174 70.7
Ca_16917_v3 Cicer arietinum L. HOM05D005188 ORTHO05D006153 2.2e-59 232.6 173 71.7
Prupe.4G271200 Prunus persica HOM05D005188 ORTHO05D006153 2.2e-59 232.6 174 73.6
Aqoxy5G02315 Aquilegia oxysepala HOM05D005188 ORTHO05D006153 3.7e-59 231.9 174 71.3
Cc10_g12590 Coffea canephora HOM05D005188 ORTHO05D006153 3.7e-59 231.9 172 70.3
Aa31LG1G17870 Aethionema arabicum HOM05D005188 ORTHO05D006153 4.9e-59 231.5 176 71.6
AT5G64040 Arabidopsis thaliana HOM05D005188 ORTHO05D006153 4.9e-59 231.5 176 70.5
Sp2g27110 Schrenkiella parvula HOM05D005188 ORTHO05D006153 8.3e-59 230.7 175 71.4
Carub.0008s2482 Capsella rubella HOM05D005188 ORTHO05D006153 1.1e-58 230.3 176 70.5
BcaC01g02658 Brassica carinata HOM05D005188 ORTHO05D006153 1.8e-58 229.6 175 71.4
BcaC01g02659 Brassica carinata HOM05D005188 ORTHO05D006153 1.8e-58 229.6 175 71.4
AL8G41300 Arabidopsis lyrata HOM05D005188 ORTHO05D006153 3.1e-58 228.8 176 69.9
BcaB02g09793 Brassica carinata HOM05D005188 ORTHO05D006153 7.0e-58 227.6 175 70.9
CDE02G4401 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 7.0e-58 227.6 174 70.7
Migut.H00702 Erythranthe guttata HOM05D005188 ORTHO05D006153 1.2e-57 226.9 173 69.9
Thhalv10005005m.g Eutrema salsugineum HOM05D005188 ORTHO05D006153 1.6e-57 226.5 175 70.3
Glyma.04G215800 Glycine max HOM05D005188 ORTHO05D006153 2.0e-57 226.1 172 69.8
arahy.Tifrunner.gnm1.ann1.DJM1RY Arachis hypogaea HOM05D005188 ORTHO05D006153 4.5e-57 224.9 175 73.1
Psat5g063680 Pisum sativum HOM05D005188 ORTHO05D006153 4.5e-57 224.9 174 70.1
A06p30750 Brassica napus HOM05D005188 ORTHO05D006153 5.9e-57 224.6 175 70.3
Glyma.06G150300 Glycine max HOM05D005188 ORTHO05D006153 5.9e-57 224.6 172 69.2
arahy.Tifrunner.gnm1.ann1.V5WWJ8 Arachis hypogaea HOM05D005188 ORTHO05D006153 1.7e-56 223.0 175 72.0
MBI03_g42548_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 2.3e-56 222.6 173 73.4
PGSC0003DMG400005805 Solanum tuberosum HOM05D005188 ORTHO05D006153 2.9e-56 222.2 175 70.3
Ah.02g121530 Amaranthus hybridus HOM05D005188 ORTHO05D006153 3.8e-56 221.9 172 69.2
CAN.G792.16 Capsicum annuum HOM05D005188 ORTHO05D006153 3.8e-56 221.9 173 68.8
Solyc08g013670.3 Solanum lycopersicum HOM05D005188 ORTHO05D006153 5.0e-56 221.5 172 70.9
C09p09640 Brassica napus HOM05D005188 ORTHO05D006153 6.6e-56 221.1 175 70.9
Sed0010246 Sechium edule HOM05D005188 ORTHO05D006153 8.6e-56 220.7 174 72.4
Hund23270 Selenicereus undatus HOM05D005188 ORTHO05D006153 1.1e-55 220.3 180 67.8
BcaB07g29717 Brassica carinata HOM05D005188 ORTHO05D006153 1.5e-55 219.9 175 69.1
SGA_v2.0_scaffold370G50114 Striga asiatica HOM05D005188 ORTHO05D006153 1.5e-55 219.9 170 69.4
Actinidia06616 Actinidia chinensis HOM05D005188 ORTHO05D006153 1.9e-55 219.5 172 69.2
Sopen08g004510 Solanum pennellii HOM05D005188 ORTHO05D006153 1.9e-55 219.5 173 69.9
SalBow1G2748 Salvia bowleyana HOM05D005188 ORTHO05D006153 2.5e-55 219.2 170 68.2
AUR62017881 Chenopodium quinoa HOM05D005188 ORTHO05D006153 3.3e-55 218.8 176 68.2
MBI06_g27435_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 3.3e-55 218.8 161 73.9
Oeu037826.1 Olea europaea HOM05D005188 ORTHO05D006153 7.3e-55 217.6 173 67.6
MSTRG.2649 Avicennia marina HOM05D005188 ORTHO05D006153 9.5e-55 217.2 172 69.8
Lj4g0001203 Lotus japonicus HOM05D005188 ORTHO05D006153 9.5e-55 217.2 173 70.5
MD15G1441800 Malus domestica HOM05D005188 ORTHO05D006153 9.5e-55 217.2 174 65.5
CSS0010064 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 1.2e-54 216.9 179 67.0
CSS0045275 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 1.2e-54 216.9 179 67.0
Peaxi162Scf01257g00019 Petunia axillaris HOM05D005188 ORTHO05D006153 1.2e-54 216.9 180 63.9
Sed0019160 Sechium edule HOM05D005188 ORTHO05D006153 1.2e-54 216.9 177 67.2
DCAR_001211 Daucus carota HOM05D005188 ORTHO05D006153 2.1e-54 216.1 174 66.1
C02p63110 Brassica napus HOM05D005188 ORTHO05D006153 3.6e-54 215.3 175 67.4
BolC2t12383H Brassica oleracea HOM05D005188 ORTHO05D006153 3.6e-54 215.3 175 67.4
unitig_899.g14682 Utricularia gibba HOM05D005188 ORTHO05D006153 3.6e-54 215.3 170 67.1
BolC9t53875H Brassica oleracea HOM05D005188 ORTHO05D006153 4.7e-54 214.9 186 67.2
MD01G1004300 Malus domestica HOM05D005188 ORTHO05D006153 4.7e-54 214.9 174 64.9
BcaC03g18240 Brassica carinata HOM05D005188 ORTHO05D006153 6.1e-54 214.5 175 67.4
Nitab4.5_0000673g0170 Nicotiana tabacum HOM05D005188 ORTHO05D006153 8.0e-54 214.2 171 68.4
Lj2A607T35 Lonicera japonica HOM05D005188 ORTHO05D006153 1.0e-53 213.8 176 66.5
ATR0987G005 Amborella trichopoda HOM05D005188 ORTHO05D006153 2.3e-53 212.6 179 65.9
FvH4_1g24360 Fragaria vesca HOM05D005188 ORTHO05D006153 8.9e-53 210.7 170 65.3
FAN19G1208 Fragaria x ananassa HOM05D005188 ORTHO05D006153 8.9e-53 210.7 170 65.3
HanXRQChr04g0107551 Helianthus annuus HOM05D005188 ORTHO05D006153 2.0e-52 209.5 170 66.5
HPP92_019391 Vanilla planifolia HOM05D005188 ORTHO05D006153 4.4e-52 208.4 170 64.1
Lsat_1_v5_gn_1_10061 Lactuca sativa HOM05D005188 ORTHO05D006153 5.7e-52 208.0 176 64.2
FAN28G1395 Fragaria x ananassa HOM05D002517 ORTHO05D003040 1.7e-51 206.5 168 64.3
ECA247G1960 Erigeron canadensis HOM05D005188 ORTHO05D006153 2.2e-51 206.1 171 65.5
BolC3t18491H Brassica oleracea HOM05D005188 ORTHO05D006153 1.8e-50 203.0 179 65.4
GSVIVG01026478001 Vitis vinifera HOM05D005188 ORTHO05D006153 3.2e-50 202.2 170 63.5
Atru.chr4.905 Acer truncatum HOM05D005188 ORTHO05D006153 4.1e-50 201.8 172 65.7
FAN26G2437 Fragaria x ananassa HOM05D002517 ORTHO05D006153 7.0e-50 201.1 170 64.1
RcHm_v2.0_Chr2g0120891 Rosa chinensis HOM05D005188 ORTHO05D006153 2.7e-49 199.1 170 61.8
vmacro12795 Vaccinium macrocarpon HOM05D005188 ORTHO05D006153 3.5e-49 198.7 176 64.2
THA.LOC104800083 Tarenaya hassleriana HOM05D005188 ORTHO05D006153 1.0e-48 197.2 177 62.1
EL10Ac6g15302 Beta vulgaris HOM05D005188 ORTHO05D006153 5.0e-48 194.9 130 76.2
Rhsim10G0133700 Rhododendron simsii HOM05D005188 ORTHO05D006153 5.0e-48 194.9 177 64.4
PSO541G2775 Papaver somniferum HOM05D005188 ORTHO05D006153 9.5e-47 190.7 172 58.1
Duzib264G0557 Durio zibethinus HOM05D005188 ORTHO05D006153 1.4e-45 186.8 147 72.1
PSO675G9377 Papaver somniferum HOM05D005188 ORTHO05D006153 1.8e-45 186.4 172 57.6
A09p08510 Brassica napus HOM05D005188 ORTHO05D006153 2.3e-45 186.0 175 63.4
BraA09t36500Z Brassica rapa HOM05D005188 ORTHO05D006153 2.3e-45 186.0 175 63.4
Duzib147G0711 Durio zibethinus HOM05D005188 ORTHO05D006153 8.9e-45 184.1 147 72.1
Oeu050119.1 Olea europaea HOM05D005188 ORTHO05D006153 8.9e-45 184.1 170 58.2
Zm00001eb138650 Zea mays HOM05D005188 ORTHO05D006153 2.2e-43 179.5 133 66.9
Zm00001eb409220 Zea mays HOM05D005188 ORTHO05D006153 3.7e-43 178.7 147 65.3
Eucgr.I00200 Eucalyptus grandis HOM05D005188 ORTHO05D006153 1.1e-42 177.2 147 69.4
Os12g0189400 Oryza sativa ssp. japonica HOM05D005188 ORTHO05D006153 2.4e-42 176.0 112 76.8
C03p62290 Brassica napus HOM05D005188 ORTHO05D006153 1.1e-39 167.2 145 67.6
BraA06t26017Z Brassica rapa HOM05D005188 ORTHO05D006153 3.6e-38 162.2 145 66.2
SEGI_16120 Sequoiadendron giganteum HOM05D005188 ORTHO05D006153 9.8e-36 154.1 140 56.4
Sc16g0003820 Simmondsia chinensis HOM05D005188 ORTHO05D006153 3.9e-32 142.1 142 59.2
SMO144G0055 Selaginella moellendorffii HOM05D005188 ORTHO05D006153 5.1e-32 141.7 82 76.8
Duzib187G0538 Durio zibethinus HOM05D005188 ORTHO05D006153 3.3e-31 139.0 130 65.4
BcaB04g17222 Brassica carinata HOM05D005188 ORTHO05D006153 1.2e-30 137.1 122 60.7
BcaB08g36594 Brassica carinata HOM05D005188 ORTHO05D006153 1.6e-30 136.7 74 87.8
BolC2t07163H Brassica oleracea HOM05D005188 ORTHO05D006153 4.7e-30 135.2 74 86.5
BolC7t41311H Brassica oleracea HOM05D005188 ORTHO05D006153 4.7e-30 135.2 72 88.9
BcaC04g18786 Brassica carinata HOM05D005188 ORTHO05D006153 1.8e-29 133.3 74 85.1
AUR62003566 Chenopodium quinoa HOM05D005188 ORTHO05D006153 7.8e-25 117.9 173 47.4
Mapoly0116s0042 Marchantia polymorpha HOM05D005188 ORTHO05D006153 1.2e-22 110.5 153 42.5
BcaC03g13890 Brassica carinata HOM05D005188 ORTHO05D006153 3.1e-21 105.9 74 70.3
Cre02.g082500 Chlamydomonas reinhardtii HOM05D005188 ORTHO05D006153 1.5e-20 103.6 121 47.9
AagrBONN_evm.TU.Sc2ySwM_362.2803 Anthoceros agrestis HOM05D005188 ORTHO05D006153 4.9e-19 98.6 94 56.4
Nn5g28540 Nelumbo nucifera HOM05D005188 ORTHO05D006153 3.0e-16 89.4 106 56.6
Gohir.D04G031000 Gossypium hirsutum HOM05D006465 ORTHO05D008207 8.7e-16 87.8 107 55.1
CBR_g45633 Chara braunii HOM05D005188 ORTHO05D006153 1.1e-15 87.4 92 53.3
MCO09G058 Micromonas commoda HOM05D005188 ORTHO05D006153 2.5e-15 86.3 137 38.7
Nitab4.5_0005544g0070 Nicotiana tabacum HOM05D005188 ORTHO05D006153 5.6e-15 85.1 107 51.4
PRCOL_00004565 Prasinoderma coloniale HOM05D005188 ORTHO05D006153 5.6e-15 85.1 70 58.6
BraA02t09233Z Brassica rapa HOM05D005188 ORTHO05D006153 1.3e-14 84.0 118 51.7
A02p43130 Brassica napus HOM05D005188 ORTHO05D006153 6.4e-11 71.6 103 49.5
C02p10930 Brassica napus HOM05D005188 ORTHO05D006153 7.9e-09 64.7 30 90.0


User provided reference genes

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