Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra07G0084000 Salix brachista HOM05D006246 ORTHO05D007932 3.6e-108 395.2 240 100.0
Potri.005G067400 Populus trichocarpa HOM05D006246 ORTHO05D007932 1.3e-20 104.4 68 82.4
Potri.007G101900 Populus trichocarpa HOM05D006246 ORTHO05D007932 5.0e-17 92.4 79 72.2
Sabra05G0055400 Salix brachista HOM05D006246 ORTHO05D007932 4.7e-15 85.9 41 92.7
TPR.G26967 Trifolium pratense HOM05D006246 ORTHO05D007932 1.8e-14 84.0 64 62.5
Aa31LG5G5660 Aethionema arabicum HOM05D006246 ORTHO05D007932 2.3e-14 83.6 42 88.1
BcaB02g10382 Brassica carinata HOM05D006246 ORTHO05D007932 2.3e-14 83.6 42 88.1
BcaC02g11223 Brassica carinata HOM05D006246 ORTHO05D007932 2.3e-14 83.6 42 88.1
BolC4t23440H Brassica oleracea HOM05D006246 ORTHO05D007932 2.3e-14 83.6 42 88.1
Thhalv10017462m.g Eutrema salsugineum HOM05D006246 ORTHO05D007932 2.3e-14 83.6 42 88.1
THA.LOC104826210 Tarenaya hassleriana HOM05D006246 ORTHO05D007932 2.3e-14 83.6 42 88.1
Ca_00010_v3 Cicer arietinum L. HOM05D006246 ORTHO05D007932 3.0e-14 83.2 42 90.5
Ca_00013_v3 Cicer arietinum L. HOM05D006246 ORTHO05D007932 3.0e-14 83.2 42 90.5
FvH4_5g18370 Fragaria vesca HOM05D006246 ORTHO05D007932 3.0e-14 83.2 42 88.1
FAN08G0289 Fragaria x ananassa HOM05D006246 ORTHO05D007932 3.0e-14 83.2 42 88.1
FAN13G0403 Fragaria x ananassa HOM05D006246 ORTHO05D007932 3.0e-14 83.2 42 88.1
FAN18G0928 Fragaria x ananassa HOM05D006246 ORTHO05D007932 3.0e-14 83.2 42 88.1
THA.LOC104800880 Tarenaya hassleriana HOM05D006246 ORTHO05D007932 3.0e-14 83.2 42 85.7
TWI59G0384 Tripterygium wilfordii HOM05D006246 ORTHO05D007932 3.0e-14 83.2 42 92.9
CSS0014325 Camellia sinensis var. sinensis HOM05D006246 ORTHO05D007932 5.1e-14 82.4 64 84.4
Sp4g13780 Schrenkiella parvula HOM05D006246 ORTHO05D007932 5.1e-14 82.4 42 88.1
Glyma.04G204100 Glycine max HOM05D006246 ORTHO05D007932 6.7e-14 82.0 42 88.1
Glyma.06G161300 Glycine max HOM05D006246 ORTHO05D007932 6.7e-14 82.0 42 88.1
Medtr1g101240 Medicago truncatula HOM05D006246 ORTHO05D007932 6.7e-14 82.0 42 88.1
Phvul.009G159900 Phaseolus vulgaris HOM05D006246 ORTHO05D007932 6.7e-14 82.0 42 88.1
Psat6g198440 Pisum sativum HOM05D006246 ORTHO05D007932 6.7e-14 82.0 42 88.1
Carub.0004s1261 Capsella rubella HOM05D006246 ORTHO05D007932 8.8e-14 81.6 41 87.8
CARHR124920 Cardamine hirsuta HOM05D006246 ORTHO05D007932 8.8e-14 81.6 41 87.8
Sc23g0001630 Simmondsia chinensis HOM05D006246 ORTHO05D007932 8.8e-14 81.6 42 85.7
A05p14300 Brassica napus HOM05D006246 ORTHO05D007932 1.1e-13 81.3 65 80.0
DCAR_027686 Daucus carota HOM05D006246 ORTHO05D007932 1.1e-13 81.3 42 85.7
Lj5g0026305 Lotus japonicus HOM05D006246 ORTHO05D007932 1.1e-13 81.3 41 90.2
Atru.chr13.2337 Acer truncatum HOM05D006246 ORTHO05D007932 1.5e-13 80.9 42 85.7
Atru.chr3.3065 Acer truncatum HOM05D006246 ORTHO05D007932 1.5e-13 80.9 42 85.7
SalBow8G1996 Salvia bowleyana HOM05D006246 ORTHO05D007932 1.5e-13 80.9 42 85.7
SGA_v2.0_scaffold118G32544 Striga asiatica HOM05D006246 ORTHO05D007932 1.5e-13 80.9 42 85.7
SGA_v2.0_scaffold24G10594 Striga asiatica HOM05D006246 ORTHO05D007932 1.5e-13 80.9 42 85.7
Actinidia30538 Actinidia chinensis HOM05D006246 ORTHO05D007932 2.6e-13 80.1 42 85.7
SHI11488 Sapria himalayana HOM05D006246 ORTHO05D007932 2.6e-13 80.1 69 58.0
TPR.G20664 Trifolium pratense HOM05D006246 ORTHO05D007932 2.6e-13 80.1 42 85.7
Cpa.g.sc49.43 Carica papaya HOM05D006246 ORTHO05D007932 3.3e-13 79.7 42 85.7
Migut.N03358 Erythranthe guttata HOM05D006246 ORTHO05D007932 4.4e-13 79.3 41 85.4
Lalb_Chr01g0009371 Lupinus albus HOM05D006246 ORTHO05D007932 4.4e-13 79.3 69 60.9
Lalb_Chr03g0034581 Lupinus albus HOM05D006246 ORTHO05D007932 4.4e-13 79.3 69 60.9
Sp1g40730 Schrenkiella parvula HOM05D006246 ORTHO05D007932 4.4e-13 79.3 42 85.7
Oeu021218.1 Olea europaea HOM05D006246 ORTHO05D007932 5.7e-13 79.0 42 83.3
CAN.G1647.5 Capsicum annuum HOM05D006246 ORTHO05D007932 7.4e-13 78.6 37 91.9
Carub.0002s2226 Capsella rubella HOM05D006246 ORTHO05D007932 9.7e-13 78.2 41 82.9
Gorai.009G310900 Gossypium raimondii HOM05D006246 ORTHO05D007932 9.7e-13 78.2 42 83.3
Ciclev10002937m.g Citrus clementina HOM05D006246 ORTHO05D007932 1.3e-12 77.8 42 83.3
QL02p028696 Quercus lobata HOM05D006246 ORTHO05D007932 1.3e-12 77.8 41 82.9
COL.COLO4_29720 Corchorus olitorius HOM05D006246 ORTHO05D007932 1.7e-12 77.4 41 85.4
TWI14G1413 Tripterygium wilfordii HOM05D006246 ORTHO05D007932 2.2e-12 77.0 42 88.1
Cfa012983 Carpinus fangiana HOM05D006246 ORTHO05D007932 2.8e-12 76.6 42 83.3
Migut.C01275 Erythranthe guttata HOM05D006246 ORTHO05D007932 2.8e-12 76.6 42 81.0
Sed0027909 Sechium edule HOM05D006246 ORTHO05D007932 2.8e-12 76.6 42 85.7
Gohir.A05G293700 Gossypium hirsutum HOM05D006246 ORTHO05D007932 3.7e-12 76.3 41 82.9
Gohir.D05G294400 Gossypium hirsutum HOM05D006246 ORTHO05D007932 3.7e-12 76.3 41 82.9
HPP92_026670 Vanilla planifolia HOM05D006246 ORTHO05D007932 4.8e-12 75.9 68 54.4
A05p14510 Brassica napus HOM05D006246 ORTHO05D007932 8.2e-12 75.1 43 81.4
Eucgr.I02713 Eucalyptus grandis HOM05D006246 ORTHO05D007932 8.2e-12 75.1 41 80.5
CDE02G3719 Ceratophyllum demersum HOM05D006246 ORTHO05D007932 1.1e-11 74.7 37 86.5
Haze_21346 Corylus avellana HOM05D006246 ORTHO05D007932 1.1e-11 74.7 41 82.9
Haze_21352 Corylus avellana HOM05D006246 ORTHO05D007932 1.1e-11 74.7 41 82.9
Duzib114G0955 Durio zibethinus HOM05D006246 ORTHO05D007932 1.1e-11 74.7 42 76.2
HanXRQChr11g0322351 Helianthus annuus HOM05D006246 ORTHO05D007932 1.1e-11 74.7 40 80.0
Actinidia08157 Actinidia chinensis HOM05D006246 ORTHO05D007932 1.4e-11 74.3 39 79.5
Duzib106G0997 Durio zibethinus HOM05D006246 ORTHO05D007932 1.4e-11 74.3 41 78.0
PSO170G6052 Papaver somniferum HOM05D006246 ORTHO05D007932 1.4e-11 74.3 42 76.2
PSO782G0303 Papaver somniferum HOM05D006246 ORTHO05D007932 1.4e-11 74.3 42 76.2
Thecc.03G070200 Theobroma cacao HOM05D006246 ORTHO05D007932 1.4e-11 74.3 41 78.0
MD06G1239400 Malus domestica HOM05D006246 ORTHO05D007932 1.8e-11 73.9 35 91.4
MBI03_g07695_MAGBIO Magnolia biondii HOM05D006246 ORTHO05D007932 2.4e-11 73.6 39 76.9
Sed0011737 Sechium edule HOM05D006246 ORTHO05D007932 4.1e-11 72.8 34 91.2
TWI23G1247 Tripterygium wilfordii HOM05D006246 ORTHO05D007932 4.1e-11 72.8 34 91.2
CDE09G0543 Ceratophyllum demersum HOM05D000196 ORTHO05D000279 5.3e-11 72.4 38 78.9
Medtr7g085440 Medicago truncatula HOM05D006246 ORTHO05D007932 6.9e-11 72.0 74 55.4
Nitab4.5_0001579g0010 Nicotiana tabacum HOM05D006246 ORTHO05D007932 9.1e-11 71.6 35 85.7
vmacro01162 Vaccinium macrocarpon HOM05D006246 ORTHO05D007932 9.1e-11 71.6 34 88.2
Aqoxy7G03540 Aquilegia oxysepala HOM05D006246 ORTHO05D007932 1.2e-10 71.2 36 83.3
BraA05t20382Z Brassica rapa HOM05D006246 ORTHO05D007932 1.2e-10 71.2 42 78.6
Duzib128G0188 Durio zibethinus HOM05D006246 ORTHO05D007932 1.5e-10 70.9 34 85.3
Gohir.A05G410500 Gossypium hirsutum HOM05D006246 ORTHO05D007932 1.5e-10 70.9 39 79.5
FAN04G2944 Fragaria x ananassa HOM05D006246 ORTHO05D007932 2.6e-10 70.1 39 82.1
Os05g0270400 Oryza sativa ssp. japonica HOM05D006246 ORTHO05D007932 2.6e-10 70.1 43 76.7
Nitab4.5_0000365g0140 Nicotiana tabacum HOM05D006246 ORTHO05D007932 3.4e-10 69.7 34 88.2
arahy.Tifrunner.gnm1.ann1.V9PSGM Arachis hypogaea HOM05D006246 ORTHO05D007932 4.5e-10 69.3 36 83.3
TAR636G3186 Trochodendron aralioides HOM05D006246 ORTHO05D007932 5.9e-10 68.9 34 85.3
Ah.05g178740 Amaranthus hybridus HOM05D006246 ORTHO05D007932 7.7e-10 68.6 60 56.7
Cc05_g03280 Coffea canephora HOM05D006246 ORTHO05D007932 1.0e-09 68.2 35 82.9
Zm00001eb059790 Zea mays HOM05D006246 ORTHO05D007932 1.3e-09 67.8 43 76.7
Mapoly0071s0091 Marchantia polymorpha HOM05D006246 ORTHO05D007932 3.8e-09 66.2 86 41.9
Os04g0295000 Oryza sativa ssp. japonica HOM05D006246 ORTHO05D007932 5.0e-09 65.9 43 72.1
CARHR068770 Cardamine hirsuta HOM05D006246 ORTHO05D007932 1.4e-08 64.3 47 66.0
Sc26g0000490 Simmondsia chinensis HOM05D006246 ORTHO05D007932 2.5e-08 63.5 42 71.4
Manes.12G158900 Manihot esculenta HOM05D006246 ORTHO05D007932 3.2e-08 63.2 68 58.8
AagrBONN_evm.TU.Sc2ySwM_344.1565 Anthoceros agrestis HOM05D006246 ORTHO05D007932 2.1e-07 60.5 38 68.4
Sabra15G0103900 Salix brachista HOM05D001072 ORTHO05D349828 4.7e-07 59.3 43 74.4
Gohir.A05G410100 Gossypium hirsutum HOM05D006246 ORTHO05D007932 1.8e-06 57.4 33 75.8
Pp3c16_16780 Physcomitrium patens HOM05D006246 ORTHO05D007932 3.9e-06 56.2 34 70.6
BcaB06g28525 Brassica carinata HOM05D006246 ORTHO05D007932 6.7e-06 55.5 35 74.3
BolC4t27573H Brassica oleracea HOM05D006246 ORTHO05D007932 6.7e-06 55.5 35 74.3


User provided reference genes

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