Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra07G0083400 Salix brachista HOM05D001889 ORTHO05D001853 1.3e-95 353.2 207 100.0
Potri.007G101100 Populus trichocarpa HOM05D001889 ORTHO05D001853 1.4e-23 114.0 207 52.7
Sabra05G0055700 Salix brachista HOM05D001889 ORTHO05D001853 1.6e-19 100.5 114 54.4
GSVIVG01022341001 Vitis vinifera HOM05D001889 ORTHO05D001853 2.0e-14 83.6 68 58.8
SGA_v2.0_scaffold143G35720 Striga asiatica HOM05D001889 ORTHO05D001853 7.6e-14 81.6 74 52.7
Prupe.4G275800 Prunus persica HOM05D001889 ORTHO05D001853 1.3e-13 80.9 45 77.8
Ca_16983_v3 Cicer arietinum L. HOM05D001889 ORTHO05D001853 1.7e-13 80.5 45 82.2
Atru.chr4.998 Acer truncatum HOM05D001889 ORTHO05D001853 2.2e-13 80.1 74 56.8
Duzib264G0580 Durio zibethinus HOM05D001889 ORTHO05D001853 2.2e-13 80.1 74 54.1
Lalb_Chr08g0238181 Lupinus albus HOM05D001889 ORTHO05D001853 2.2e-13 80.1 68 57.4
PSO528G0001 Papaver somniferum HOM05D001889 ORTHO05D001853 2.2e-13 80.1 74 52.7
COL.COLO4_35809 Corchorus olitorius HOM05D001889 ORTHO05D001853 3.8e-13 79.3 70 58.6
Manes.12G159100 Manihot esculenta HOM05D001889 ORTHO05D001853 4.9e-13 79.0 45 75.6
Sed0002663 Sechium edule HOM05D001889 ORTHO05D001853 4.9e-13 79.0 69 58.0
THA.LOC104818417 Tarenaya hassleriana HOM05D001889 ORTHO05D001853 6.4e-13 78.6 69 56.5
CiPaw.04G079500 Carya illinoinensis HOM05D001889 ORTHO05D001853 8.4e-13 78.2 69 56.5
CsaV3_4G030720 Cucumis sativus L. HOM05D001889 ORTHO05D001853 8.4e-13 78.2 69 58.0
Dinv04452 Davidia involucrata HOM05D001889 ORTHO05D001853 8.4e-13 78.2 67 56.7
Nn5g28431 Nelumbo nucifera HOM05D001889 ORTHO05D001853 8.4e-13 78.2 70 54.3
SalBow7G2453 Salvia bowleyana HOM05D001889 ORTHO05D001853 8.4e-13 78.2 71 50.7
C09p68160 Brassica napus HOM05D001889 ORTHO05D001853 1.1e-12 77.8 52 67.3
BolC9t59566H Brassica oleracea HOM05D001889 ORTHO05D001853 1.1e-12 77.8 54 66.7
Cpa.g.sc37.10 Carica papaya HOM05D001889 ORTHO05D001853 1.1e-12 77.8 51 68.6
Ciclev10002914m.g Citrus clementina HOM05D001889 ORTHO05D001853 1.1e-12 77.8 74 55.4
Gohir.A11G057500 Gossypium hirsutum HOM05D001889 ORTHO05D001853 1.1e-12 77.8 45 75.6
Gohir.D11G061700 Gossypium hirsutum HOM05D001889 ORTHO05D001853 1.1e-12 77.8 45 75.6
Gorai.007G066500 Gossypium raimondii HOM05D001889 ORTHO05D001853 1.1e-12 77.8 45 75.6
ClCG04G001990 Citrullus lanatus HOM05D001889 ORTHO05D001853 1.4e-12 77.4 45 75.6
Cc08_g05970 Coffea canephora HOM05D001889 ORTHO05D001853 1.4e-12 77.4 69 53.6
PSO170G2682 Papaver somniferum HOM05D001889 ORTHO05D001853 1.4e-12 77.4 74 51.4
Thecc.01G136800 Theobroma cacao HOM05D001889 ORTHO05D001853 1.4e-12 77.4 68 57.4
vmacro12748 Vaccinium macrocarpon HOM05D001889 ORTHO05D001853 1.4e-12 77.4 71 54.9
arahy.Tifrunner.gnm1.ann1.9W5UDX Arachis hypogaea HOM05D001889 ORTHO05D001853 1.9e-12 77.0 68 57.4
Gohir.D09G004700 Gossypium hirsutum HOM05D001889 ORTHO05D001853 1.9e-12 77.0 70 52.9
Gorai.006G006300 Gossypium raimondii HOM05D001889 ORTHO05D001853 1.9e-12 77.0 70 52.9
RcHm_v2.0_Chr2g0122541 Rosa chinensis HOM05D001889 ORTHO05D001853 1.9e-12 77.0 45 73.3
MD01G1006400 Malus domestica HOM05D001889 ORTHO05D001853 2.4e-12 76.6 70 52.9
MSTRG.23484 Avicennia marina HOM05D001889 ORTHO05D001853 3.2e-12 76.3 71 50.7
FAN23G3065 Fragaria x ananassa HOM05D001889 ORTHO05D001853 3.2e-12 76.3 43 76.7
Psat5g060280 Pisum sativum HOM05D001889 ORTHO05D001853 3.2e-12 76.3 45 75.6
AT5G09250 Arabidopsis thaliana HOM05D001889 ORTHO05D001853 4.2e-12 75.9 44 75.0
arahy.Tifrunner.gnm1.ann1.LMT1Q9 Arachis hypogaea HOM05D001889 ORTHO05D001853 4.2e-12 75.9 68 55.9
BcaB08g37223 Brassica carinata HOM05D001889 ORTHO05D001853 4.2e-12 75.9 44 75.0
BcaC03g13246 Brassica carinata HOM05D001889 ORTHO05D001853 4.2e-12 75.9 44 75.0
A10p27960 Brassica napus HOM05D001889 ORTHO05D001853 4.2e-12 75.9 44 75.0
C02p03780 Brassica napus HOM05D001889 ORTHO05D001853 4.2e-12 75.9 44 75.0
C09p68070 Brassica napus HOM05D001889 ORTHO05D001853 4.2e-12 75.9 44 75.0
C09p68100 Brassica napus HOM05D001889 ORTHO05D001853 4.2e-12 75.9 44 75.0
C09p68130 Brassica napus HOM05D001889 ORTHO05D001853 4.2e-12 75.9 44 75.0
BolC2t06339H Brassica oleracea HOM05D001889 ORTHO05D001853 4.2e-12 75.9 44 75.0
Carub.0006s0780 Capsella rubella HOM05D001889 ORTHO05D001853 4.2e-12 75.9 44 75.0
MELO3C008937.2 Cucumis melo HOM05D001889 ORTHO05D001853 4.2e-12 75.9 69 56.5
Oeu037857.1 Olea europaea HOM05D001889 ORTHO05D001853 4.2e-12 75.9 70 50.0
PGR119G2499 Punica granatum HOM05D001889 ORTHO05D001853 4.2e-12 75.9 45 71.1
Sp6g34060 Schrenkiella parvula HOM05D001889 ORTHO05D001853 4.2e-12 75.9 44 75.0
Aa31LG3G17750 Aethionema arabicum HOM05D001889 ORTHO05D001853 5.4e-12 75.5 44 72.7
FAN28G1280 Fragaria x ananassa HOM05D001889 ORTHO05D001853 5.4e-12 75.5 44 75.0
Phvul.009G154400 Phaseolus vulgaris HOM05D001889 ORTHO05D001853 5.4e-12 75.5 44 75.0
TAR376G0469 Trochodendron aralioides HOM05D001889 ORTHO05D001853 5.4e-12 75.5 45 71.1
AL6G19640 Arabidopsis lyrata HOM05D001889 ORTHO05D001853 7.1e-12 75.1 44 72.7
BcaB05g21562 Brassica carinata HOM05D001889 ORTHO05D001853 7.1e-12 75.1 44 72.7
CSS0033755 Camellia sinensis var. sinensis HOM05D001889 ORTHO05D001853 7.1e-12 75.1 66 56.1
CSS0050045 Camellia sinensis var. sinensis HOM05D001889 ORTHO05D001853 7.1e-12 75.1 66 56.1
FAN26G0961 Fragaria x ananassa HOM05D001889 ORTHO05D001853 7.1e-12 75.1 45 71.1
QL10p041230 Quercus lobata HOM05D001889 ORTHO05D001853 7.1e-12 75.1 64 59.4
TWI31G0409 Tripterygium wilfordii HOM05D001889 ORTHO05D001853 7.1e-12 75.1 44 70.5
TWI31G0820 Tripterygium wilfordii HOM05D001889 ORTHO05D001853 7.1e-12 75.1 44 70.5
Thhalv10014921m.g Eutrema salsugineum HOM05D001889 ORTHO05D001853 9.2e-12 74.7 44 72.7
MBI06_g35207_MAGBIO Magnolia biondii HOM05D001889 ORTHO05D001853 9.2e-12 74.7 70 48.6
TAR628G0709 Trochodendron aralioides HOM05D001889 ORTHO05D001853 9.2e-12 74.7 55 56.4
CARHR204180 Cardamine hirsuta HOM05D001889 ORTHO05D001853 1.2e-11 74.3 44 70.5
Haze_25372 Corylus avellana HOM05D001889 ORTHO05D001853 1.6e-11 73.9 45 71.1
Eucgr.I00122 Eucalyptus grandis HOM05D001889 ORTHO05D001853 1.6e-11 73.9 45 68.9
Lj1g0012003 Lotus japonicus HOM05D001889 ORTHO05D001853 1.6e-11 73.9 43 74.4
CANSAT01G0551 Cannabis sativa HOM05D001889 ORTHO05D001853 2.1e-11 73.6 64 53.1
FvH4_1g24880 Fragaria vesca HOM05D001889 ORTHO05D001853 2.1e-11 73.6 41 78.0
MD15G1135200 Malus domestica HOM05D001889 ORTHO05D001853 2.1e-11 73.6 67 52.2
QL10p041495 Quercus lobata HOM05D001889 ORTHO05D001853 2.1e-11 73.6 44 72.7
Migut.L00273 Erythranthe guttata HOM05D001889 ORTHO05D001853 2.7e-11 73.2 75 44.0
TWI79G0390 Tripterygium wilfordii HOM05D001889 ORTHO05D001853 2.7e-11 73.2 44 70.5
HPP92_005661 Vanilla planifolia HOM05D001889 ORTHO05D001853 2.7e-11 73.2 74 51.4
Glyma.06G155900 Glycine max HOM05D001889 ORTHO05D001853 3.5e-11 72.8 68 52.9
Lsat_1_v5_gn_5_69420 Lactuca sativa HOM05D001889 ORTHO05D001853 3.5e-11 72.8 70 47.1
unitig_37.g12356 Utricularia gibba HOM05D001889 ORTHO05D001853 3.5e-11 72.8 70 50.0
CDE06G2024 Ceratophyllum demersum HOM05D001889 ORTHO05D001853 4.6e-11 72.4 70 48.6
ATR0584G028 Amborella trichopoda HOM05D001889 ORTHO05D001853 6.0e-11 72.0 69 50.7
AUR62000517 Chenopodium quinoa HOM05D001889 ORTHO05D001853 6.0e-11 72.0 45 66.7
AUR62006860 Chenopodium quinoa HOM05D001889 ORTHO05D001853 6.0e-11 72.0 45 66.7
Glyma.04G210100 Glycine max HOM05D001889 ORTHO05D001853 6.0e-11 72.0 68 50.0
Nitab4.5_0000188g0350 Nicotiana tabacum HOM05D001889 ORTHO05D001853 6.0e-11 72.0 70 51.4
Nitab4.5_0001310g0060 Nicotiana tabacum HOM05D001889 ORTHO05D001853 6.0e-11 72.0 70 51.4
FAN19G0758 Fragaria x ananassa HOM05D001889 ORTHO05D001853 1.0e-10 71.2 41 75.6
Nn1g08969 Nelumbo nucifera HOM05D001889 ORTHO05D001853 1.0e-10 71.2 44 70.5
Peaxi162Scf00121g00210 Petunia axillaris HOM05D001889 ORTHO05D001853 1.0e-10 71.2 70 51.4
Hund07234 Selenicereus undatus HOM05D001889 ORTHO05D001853 1.0e-10 71.2 69 47.8
Solyc02g061790.4 Solanum lycopersicum HOM05D001889 ORTHO05D001853 1.0e-10 71.2 70 50.0
Sopen02g012830 Solanum pennellii HOM05D001889 ORTHO05D001853 1.0e-10 71.2 70 50.0
Hma1.2p1_0236F.1_g099210 Hydrangea macrophylla HOM05D001889 ORTHO05D001853 1.7e-10 70.5 66 51.5
Hma1.2p1_0236F.1_g099213 Hydrangea macrophylla HOM05D001889 ORTHO05D001853 1.7e-10 70.5 66 51.5
VMungo1309G2558 Vigna mungo HOM05D001889 ORTHO05D001853 1.7e-10 70.5 42 71.4
EL10Ac4g09624 Beta vulgaris HOM05D001889 ORTHO05D001853 2.3e-10 70.1 45 64.4
HanXRQChr15g0469041 Helianthus annuus HOM05D001889 ORTHO05D001853 3.0e-10 69.7 66 50.0
CAN.G23.2 Capsicum annuum HOM05D001889 ORTHO05D001853 3.9e-10 69.3 70 50.0
PGSC0003DMG400008674 Solanum tuberosum HOM05D001889 ORTHO05D001853 3.9e-10 69.3 70 50.0
Ah.06g191040 Amaranthus hybridus HOM05D001889 ORTHO05D001853 6.6e-10 68.6 45 66.7
Aqoxy6G00313 Aquilegia oxysepala HOM05D001889 ORTHO05D001853 6.6e-10 68.6 45 66.7
Rhsim10G0124000 Rhododendron simsii HOM05D001889 ORTHO05D001853 6.6e-10 68.6 66 53.0
MBI19_g04953_MAGBIO Magnolia biondii HOM05D001889 ORTHO05D001853 1.5e-09 67.4 58 46.6
Sc15g0002380 Simmondsia chinensis HOM05D001889 ORTHO05D001853 1.5e-09 67.4 45 57.8
Aqoxy5G02360 Aquilegia oxysepala HOM05D001889 ORTHO05D001853 2.5e-09 66.6 67 46.3
Sc16g0009540 Simmondsia chinensis HOM05D001889 ORTHO05D001853 2.5e-09 66.6 66 48.5
Os02g0553600 Oryza sativa ssp. japonica HOM05D001889 ORTHO05D001853 4.3e-09 65.9 66 48.5
Gohir.A09G005400 Gossypium hirsutum HOM05D001889 ORTHO05D001853 5.6e-09 65.5 44 63.6
BraA02t04973Z Brassica rapa HOM05D001889 ORTHO05D001853 7.3e-09 65.1 41 70.7
SEGI_38324 Sequoiadendron giganteum HOM05D001889 ORTHO05D001853 1.2e-08 64.3 49 55.1
ECA233G0532 Erigeron canadensis HOM05D001889 ORTHO05D001853 2.1e-08 63.5 66 45.5
SMO116G0432 Selaginella moellendorffii HOM05D001889 ORTHO05D001853 2.1e-08 63.5 45 55.6
CBR_g6578 Chara braunii HOM05D001889 ORTHO05D001853 2.8e-08 63.2 45 57.8
Medtr3g096690 Medicago truncatula HOM05D001889 ORTHO05D001853 2.8e-08 63.2 65 50.8
Hma1.2p1_1985F.1_g310060 Hydrangea macrophylla HOM05D000722 ORTHO05D001853 8.1e-08 61.6 36 72.2
Zm00001eb243600 Zea mays HOM05D001889 ORTHO05D001853 8.1e-08 61.6 68 42.6
Pp3c7_24660 Physcomitrium patens HOM05D001889 ORTHO05D001853 1.1e-07 61.2 45 55.6
TPR.G20603 Trifolium pratense HOM05D001889 ORTHO05D001853 1.1e-07 61.2 42 61.9
Ca_17466_v3 Cicer arietinum L. HOM05D001889 ORTHO05D001853 3.1e-07 59.7 45 53.3
MBI03_g28481_MAGBIO Magnolia biondii HOM05D001889 ORTHO05D001853 6.9e-07 58.5 62 45.2
AagrBONN_evm.TU.Sc2ySwM_344.3748 Anthoceros agrestis HOM05D001889 ORTHO05D001853 9.0e-07 58.2 41 58.5
Medtr8g099650 Medicago truncatula HOM05D001889 ORTHO05D001853 1.2e-06 57.8 45 48.9
Psat7g024960 Pisum sativum HOM05D001889 ORTHO05D001853 1.2e-06 57.8 45 48.9
CDE10G1213 Ceratophyllum demersum HOM05D001889 ORTHO05D001853 2.6e-06 56.6 67 43.3
Migut.A01201 Erythranthe guttata HOM05D001889 ORTHO05D001853 5.8e-06 55.5 65 41.5
Migut.J01137 Erythranthe guttata HOM05D001889 ORTHO05D001853 5.8e-06 55.5 65 41.5
CBR_g19202 Chara braunii HOM05D001889 ORTHO05D001853 7.6e-06 55.1 70 38.6
MCO10G200 Micromonas commoda HOM05D001889 ORTHO05D001853 9.9e-06 54.7 42 57.1
Sc22g0004890 Simmondsia chinensis HOM05D001889 ORTHO05D001853 9.9e-06 54.7 42 47.6


User provided reference genes

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