Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra07G0078700 Salix brachista HOM05D005154 ORTHO05D006270 1.3e-169 599.7 315 100.0
Potri.007G095600 Populus trichocarpa HOM05D005154 ORTHO05D006270 5.3e-144 514.6 317 88.3
Potri.005G073500 Populus trichocarpa HOM05D005154 ORTHO05D006270 7.7e-127 457.6 315 80.3
Sabra05G0060000 Salix brachista HOM05D005154 ORTHO05D006270 1.3e-126 456.8 315 78.7
Manes.12G131800 Manihot esculenta HOM05D005154 ORTHO05D006270 1.1e-88 330.9 310 65.5
Ciclev10026087m.g Citrus clementina HOM05D005154 ORTHO05D006270 1.2e-71 274.2 324 54.0
TWI77G0548 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 2.3e-70 270.0 319 54.5
TWI53G2081 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 1.5e-69 267.3 322 54.3
Thecc.01G097800 Theobroma cacao HOM05D005154 ORTHO05D006270 1.9e-69 266.9 311 55.6
COL.COLO4_27276 Corchorus olitorius HOM05D005154 ORTHO05D006270 1.8e-67 260.4 313 55.9
Cfa002623 Carpinus fangiana HOM05D005154 ORTHO05D006270 3.1e-67 259.6 304 55.6
Haze_24881 Corylus avellana HOM05D005154 ORTHO05D006270 3.4e-66 256.1 298 55.4
Haze_24872 Corylus avellana HOM05D005154 ORTHO05D006270 4.5e-66 255.8 298 55.4
Dinv13215 Davidia involucrata HOM05D005154 ORTHO05D006270 9.9e-66 254.6 305 55.4
Duzib147G1408 Durio zibethinus HOM05D005154 ORTHO05D006270 8.4e-65 251.5 277 56.0
Atru.chr3.1372 Acer truncatum HOM05D005154 ORTHO05D006270 1.4e-64 250.8 321 53.3
Duzib187G0267 Durio zibethinus HOM05D005154 ORTHO05D006270 3.2e-64 249.6 309 53.1
Gorai.003G040700 Gossypium raimondii HOM05D005154 ORTHO05D006270 6.0e-63 245.4 259 56.8
Eucgr.I00513 Eucalyptus grandis HOM05D005154 ORTHO05D006270 8.7e-62 241.5 241 57.7
CSS0008069 Camellia sinensis var. sinensis HOM05D005154 ORTHO05D006270 1.1e-61 241.1 308 52.3
RcHm_v2.0_Chr2g0112751 Rosa chinensis HOM05D005154 ORTHO05D006270 3.3e-61 239.6 296 54.4
Gohir.A02G128100 Gossypium hirsutum HOM05D005154 ORTHO05D006270 4.3e-61 239.2 277 54.5
Actinidia28853 Actinidia chinensis HOM05D005154 ORTHO05D006270 6.2e-60 235.3 301 52.2
CiPaw.03G144000 Carya illinoinensis HOM05D005154 ORTHO05D006270 4.0e-59 232.6 304 52.6
vmacro18586 Vaccinium macrocarpon HOM05D005154 ORTHO05D006270 4.0e-59 232.6 322 48.8
MD00G1037300 Malus domestica HOM05D005154 ORTHO05D006270 7.6e-58 228.4 296 55.1
FAN23G2516 Fragaria x ananassa HOM05D005154 ORTHO05D006270 1.3e-57 227.6 207 66.2
QL06p048470 Quercus lobata HOM05D005154 ORTHO05D006270 1.3e-57 227.6 306 50.0
Rhsim08G0012700 Rhododendron simsii HOM05D005154 ORTHO05D006270 1.3e-57 227.6 278 51.8
Nn1g06223 Nelumbo nucifera HOM05D005154 ORTHO05D006270 1.7e-57 227.3 319 48.6
FvH4_1g20490 Fragaria vesca HOM05D005154 ORTHO05D006270 3.8e-57 226.1 207 65.7
PGR004G1180 Punica granatum HOM05D005154 ORTHO05D006270 8.4e-57 224.9 242 56.2
FAN28G0994 Fragaria x ananassa HOM05D005154 ORTHO05D006270 1.9e-56 223.8 266 56.0
TAR633G1456 Trochodendron aralioides HOM05D005154 ORTHO05D006270 1.9e-56 223.8 294 50.7
Lsat_1_v5_gn_2_66460 Lactuca sativa HOM05D005154 ORTHO05D006270 3.2e-56 223.0 296 51.0
TAR362G0353 Trochodendron aralioides HOM05D005154 ORTHO05D006270 4.2e-56 222.6 310 48.4
Nitab4.5_0004570g0010 Nicotiana tabacum HOM05D005154 ORTHO05D006270 3.5e-55 219.5 256 53.9
FAN19G2087 Fragaria x ananassa HOM05D005154 ORTHO05D006270 4.6e-55 219.2 214 63.6
Gohir.D03G039500 Gossypium hirsutum HOM05D005154 ORTHO05D006270 7.9e-55 218.4 183 66.1
Lalb_Chr07g0185271 Lupinus albus HOM05D005154 ORTHO05D006270 1.3e-54 217.6 270 50.4
HanXRQChr14g0445521 Helianthus annuus HOM05D005154 ORTHO05D006270 2.3e-54 216.9 219 59.4
Cc07_g14830 Coffea canephora HOM05D005154 ORTHO05D006270 8.7e-54 214.9 320 47.2
MSTRG.3768 Avicennia marina HOM05D005154 ORTHO05D006270 1.1e-53 214.5 230 56.1
Hma1.2p1_0019F.1_g013610 Hydrangea macrophylla HOM05D005154 ORTHO05D006270 1.1e-53 214.5 313 47.3
Nn5g28615 Nelumbo nucifera HOM05D005154 ORTHO05D006270 5.6e-53 212.2 239 55.6
PSO210G3532 Papaver somniferum HOM05D005154 ORTHO05D006270 9.6e-53 211.5 281 49.5
Sopen11g004840 Solanum pennellii HOM05D005154 ORTHO05D006270 2.1e-52 210.3 317 47.6
Actinidia20002 Actinidia chinensis HOM05D005154 ORTHO05D006270 2.8e-52 209.9 247 52.2
Sed0021389 Sechium edule HOM05D005154 ORTHO05D006270 2.8e-52 209.9 257 54.1
Peaxi162Scf00381g00914 Petunia axillaris HOM05D005154 ORTHO05D006270 1.1e-51 208.0 304 48.7
arahy.Tifrunner.gnm1.ann1.0B7H6P Arachis hypogaea HOM05D005154 ORTHO05D006270 1.4e-51 207.6 296 48.3
Cpa.g.sc55.88 Carica papaya HOM05D005154 ORTHO05D006270 1.4e-51 207.6 180 67.8
MELO3C007745.2 Cucumis melo HOM05D005154 ORTHO05D006270 1.4e-51 207.6 304 48.7
Solyc11g009070.2 Solanum lycopersicum HOM05D005154 ORTHO05D006270 1.8e-51 207.2 312 47.8
THA.LOC104807680 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 1.8e-51 207.2 244 52.0
CAN.G905.36 Capsicum annuum HOM05D005154 ORTHO05D006270 2.4e-51 206.8 264 51.5
PSO447G0271 Papaver somniferum HOM05D005154 ORTHO05D006270 2.4e-51 206.8 280 49.6
PGSC0003DMG400016159 Solanum tuberosum HOM05D005154 ORTHO05D006270 3.1e-51 206.5 317 47.3
THA.LOC104798878 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 3.1e-51 206.5 217 57.6
Lj4g0010322 Lotus japonicus HOM05D005154 ORTHO05D006270 5.3e-51 205.7 291 50.2
arahy.Tifrunner.gnm1.ann1.LGH16T Arachis hypogaea HOM05D005154 ORTHO05D006270 9.0e-51 204.9 304 47.4
Prupe.6G191100 Prunus persica HOM05D005154 ORTHO05D006270 1.5e-50 204.1 248 56.0
SGA_v2.0_scaffold111G31501 Striga asiatica HOM05D005154 ORTHO05D006270 1.5e-50 204.1 278 47.8
ClCG07G017400 Citrullus lanatus HOM05D005154 ORTHO05D006270 2.0e-50 203.8 293 46.4
CARHR279200 Cardamine hirsuta HOM05D005154 ORTHO05D006270 3.4e-50 203.0 213 58.7
VMungo0251G0355 Vigna mungo HOM05D005154 ORTHO05D006270 4.5e-50 202.6 292 47.6
CsaV3_6G045320 Cucumis sativus L. HOM05D005154 ORTHO05D006270 5.8e-50 202.2 300 47.7
MBI02_g02178_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 7.6e-50 201.8 270 51.9
SGA_v2.0_scaffold335G49113 Striga asiatica HOM05D005154 ORTHO05D006270 7.6e-50 201.8 210 58.6
Thhalv10004756m.g Eutrema salsugineum HOM05D005154 ORTHO05D006270 1.0e-49 201.4 195 60.5
Ca_17754_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 1.7e-49 200.7 269 49.4
TPR.G6195 Trifolium pratense HOM05D005154 ORTHO05D006270 1.7e-49 200.7 253 51.0
Glyma.05G176600 Glycine max HOM05D005154 ORTHO05D006270 2.2e-49 200.3 301 45.8
EL10Ac6g15137 Beta vulgaris HOM05D005154 ORTHO05D006270 3.8e-49 199.5 310 43.9
Aqoxy6G00745 Aquilegia oxysepala HOM05D005154 ORTHO05D006270 6.5e-49 198.7 200 57.0
AL8G42810 Arabidopsis lyrata HOM05D005154 ORTHO05D006270 6.5e-49 198.7 198 60.1
Phvul.002G257700 Phaseolus vulgaris HOM05D005154 ORTHO05D006270 6.5e-49 198.7 277 49.5
Medtr8g089995 Medicago truncatula HOM05D005154 ORTHO05D006270 1.1e-48 198.0 291 46.4
Aa31LG1G16710 Aethionema arabicum HOM05D005154 ORTHO05D006270 3.2e-48 196.4 195 61.0
Sed0002157 Sechium edule HOM05D005154 ORTHO05D006270 3.2e-48 196.4 198 57.1
MSTRG.2575 Avicennia marina HOM05D005154 ORTHO05D006270 9.3e-48 194.9 286 46.5
BolC3t18339H Brassica oleracea HOM05D002046 ORTHO05D002180 9.3e-48 194.9 274 48.9
BolC2t12462H Brassica oleracea HOM05D005154 ORTHO05D006270 1.2e-47 194.5 196 57.1
Carub.0008s2612 Capsella rubella HOM05D005154 ORTHO05D006270 1.2e-47 194.5 302 47.0
MELO3C017601.2 Cucumis melo HOM05D005154 ORTHO05D006270 1.2e-47 194.5 288 44.1
Ca_16517_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 1.6e-47 194.1 294 44.9
BcaC01g02761 Brassica carinata HOM05D005154 ORTHO05D006270 2.1e-47 193.7 274 48.5
AUR62001985 Chenopodium quinoa HOM05D005154 ORTHO05D006270 2.7e-47 193.4 233 51.5
C03p60830 Brassica napus HOM05D005154 ORTHO05D006270 3.5e-47 193.0 274 48.9
A06p32100 Brassica napus HOM05D005154 ORTHO05D006270 6.0e-47 192.2 192 58.3
BraA06t26139Z Brassica rapa HOM05D005154 ORTHO05D006270 6.0e-47 192.2 192 58.3
Migut.L00147 Erythranthe guttata HOM05D005154 ORTHO05D006270 6.0e-47 192.2 198 58.1
Migut.H02344 Erythranthe guttata HOM05D005154 ORTHO05D006270 1.0e-46 191.4 199 58.3
Sp2g28350 Schrenkiella parvula HOM05D005154 ORTHO05D006270 1.3e-46 191.0 288 47.2
A02p43800 Brassica napus HOM05D005154 ORTHO05D006270 1.8e-46 190.7 234 50.4
SalBow5G0552 Salvia bowleyana HOM05D005154 ORTHO05D006270 1.8e-46 190.7 210 56.2
BraA02t09304Z Brassica rapa HOM05D005154 ORTHO05D006270 4.3e-45 186.0 281 46.6
CDE05G0874 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 5.7e-45 185.7 192 58.9
Medtr3g086990 Medicago truncatula HOM05D005154 ORTHO05D006270 1.3e-44 184.5 279 45.9
Hund13599 Selenicereus undatus HOM05D005154 ORTHO05D006270 2.2e-44 183.7 229 50.7
ECA238G2162 Erigeron canadensis HOM05D005154 ORTHO05D001925 4.8e-44 182.6 160 65.6
SalBow3G4482 Salvia bowleyana HOM05D005154 ORTHO05D006270 2.4e-43 180.3 321 43.3
SalBow3G3886 Salvia bowleyana HOM05D005154 ORTHO05D006270 3.1e-43 179.9 321 43.3
C02p63960 Brassica napus HOM05D005154 ORTHO05D006270 5.3e-43 179.1 208 52.9
MBI02_g27971_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 6.9e-43 178.7 267 47.9
ATR1133G017 Amborella trichopoda HOM05D005154 ORTHO05D006270 2.6e-42 176.8 143 70.6
Oeu001799.2 Olea europaea HOM05D005154 ORTHO05D006270 5.9e-42 175.6 369 38.5
Glyma.08G134000 Glycine max HOM05D005154 ORTHO05D006270 7.6e-42 175.3 254 50.8
ClCG01G018660 Citrullus lanatus HOM05D005154 ORTHO05D006270 1.0e-41 174.9 376 38.8
AT5G65250 Arabidopsis thaliana HOM05D005154 ORTHO05D006270 1.3e-41 174.5 197 54.8
Sc03g0000070 Simmondsia chinensis HOM05D005154 ORTHO05D006270 6.5e-41 172.2 228 50.0
Oeu032406.1 Olea europaea HOM05D005154 ORTHO05D006270 1.4e-40 171.0 421 35.2
GSVIVG01006633001 Vitis vinifera HOM05D005154 ORTHO05D006270 2.5e-40 170.2 137 67.9
unitig_899.g14551 Utricularia gibba HOM05D005154 ORTHO05D006270 1.0e-38 164.9 215 49.8
Sed0027637 Sechium edule HOM05D005154 ORTHO05D006270 1.4e-38 164.5 285 42.1
AUR62003820 Chenopodium quinoa HOM05D005154 ORTHO05D006270 3.9e-38 162.9 153 62.1
Lj4A897G79 Lonicera japonica HOM05D005154 ORTHO05D006270 5.7e-37 159.1 142 64.1
BcaB07g34227 Brassica carinata HOM05D005154 ORTHO05D006270 1.7e-36 157.5 109 78.0
Psat5g090640 Pisum sativum HOM05D005154 ORTHO05D006270 2.2e-36 157.1 245 42.0
SEGI_40329 Sequoiadendron giganteum HOM05D005154 ORTHO05D006270 2.2e-36 157.1 207 45.4
HPP92_016780 Vanilla planifolia HOM05D005154 ORTHO05D006270 1.4e-35 154.5 154 61.7
unitig_748.g8652 Utricularia gibba HOM05D005154 ORTHO05D006270 1.2e-34 151.4 193 49.7
DCAR_014210 Daucus carota HOM05D005154 ORTHO05D006270 6.5e-33 145.6 155 54.2
CsaV3_UNG158170 Cucumis sativus L. HOM05D001364 ORTHO05D006270 1.1e-32 144.8 183 51.4
PGR102G1872 Punica granatum HOM05D005154 ORTHO05D006270 1.1e-32 144.8 117 74.4
Os08g0484800 Oryza sativa ssp. japonica HOM05D005154 ORTHO05D006270 1.6e-31 141.0 196 47.4
Psat7g056800 Pisum sativum HOM05D005154 ORTHO05D006270 1.6e-31 141.0 151 57.6
CiPaw.04G102700 Carya illinoinensis HOM05D005154 ORTHO05D006270 7.4e-29 132.1 216 45.8
Lj2C542T5 Lonicera japonica HOM05D005154 ORTHO05D006270 8.2e-28 128.6 225 44.4
BcaNung07054 Brassica carinata HOM05D005154 ORTHO05D006270 1.8e-27 127.5 87 79.3
CsaV3_4G004630 Cucumis sativus L. HOM05D005154 ORTHO05D006270 2.5e-24 117.1 96 69.8
MD01G1033600 Malus domestica HOM05D005154 ORTHO05D006270 3.2e-24 116.7 151 53.0
CDE05G3641 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 2.7e-23 113.6 132 52.3
CDE03G0147 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 8.0e-23 112.1 103 59.2
CsaV3_UNG129000 Cucumis sativus L. HOM05D005154 ORTHO05D006270 5.9e-18 95.9 79 69.6
CiPaw.11G071200 Carya illinoinensis HOM05D005154 ORTHO05D006270 2.2e-17 94.0 61 82.0
Mapoly0112s0020 Marchantia polymorpha HOM05D005154 ORTHO05D006270 6.5e-17 92.4 147 42.9
Lj2C542T6 Lonicera japonica HOM05D005154 ORTHO05D006270 8.5e-17 92.0 61 82.0
Pp3c10_24690 Physcomitrium patens HOM05D005154 ORTHO05D006270 1.1e-16 91.7 101 53.5
CsaV3_UNG223540 Cucumis sativus L. HOM05D005154 ORTHO05D006270 1.2e-13 81.6 94 58.5
SMO171G0129 Selaginella moellendorffii HOM05D005154 ORTHO05D006270 1.5e-13 81.3 100 46.0
CBR_g50776 Chara braunii HOM05D002289 ORTHO05D004369 2.0e-13 80.9 167 38.9
Actinidia28244 Actinidia chinensis HOM05D005154 ORTHO05D006270 3.3e-13 80.1 166 44.0
AagrBONN_evm.TU.Sc2ySwM_344.1569 Anthoceros agrestis HOM05D005154 ORTHO05D006270 3.3e-13 80.1 134 41.8
Nitab4.5_0000743g0090 Nicotiana tabacum HOM05D005154 ORTHO05D006270 4.4e-13 79.7 83 56.6
CiPaw.02G062100 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.7e-12 77.8 46 89.1
MBI02_g48054_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 5.9e-10 69.3 49 79.6
Actinidia30832 Actinidia chinensis HOM05D005154 ORTHO05D006270 8.5e-09 65.5 107 44.9
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 4.0e-06 56.6 135 33.3


User provided reference genes

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