Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra07G0059700 Salix brachista HOM05D004567 ORTHO05D005726 8.0e-310 1066.2 534 100.0
Potri.007G071000 Populus trichocarpa HOM05D004567 ORTHO05D005726 1.0e-288 996.1 534 94.0
Manes.11G065400 Manihot esculenta HOM05D004567 ORTHO05D005726 2.6e-228 795.4 539 75.0
Manes.04G103500 Manihot esculenta HOM05D004567 ORTHO05D005726 2.1e-225 785.8 541 71.7
TWI74G0160 Tripterygium wilfordii HOM05D004567 ORTHO05D005726 6.3e-222 774.2 539 72.9
Cfa022165 Carpinus fangiana HOM05D004567 ORTHO05D005726 1.2e-217 760.0 539 71.2
Thecc.02G160600 Theobroma cacao HOM05D004567 ORTHO05D005726 5.7e-215 751.1 540 70.6
Duzib132G0874 Durio zibethinus HOM05D004567 ORTHO05D005726 9.1e-213 743.8 545 68.8
TWI53G0531 Tripterygium wilfordii HOM05D004567 ORTHO05D005726 2.7e-212 742.3 557 68.8
Hma1.2p1_1513F.1_g288000 Hydrangea macrophylla HOM05D004567 ORTHO05D005726 3.5e-212 741.9 550 69.3
Gorai.012G133500 Gossypium raimondii HOM05D004567 ORTHO05D005726 7.7e-212 740.7 543 68.5
Gohir.D04G147500 Gossypium hirsutum HOM05D004567 ORTHO05D005726 2.3e-211 739.2 543 68.3
Ciclev10031151m.g Citrus clementina HOM05D004567 ORTHO05D005726 1.5e-210 736.5 530 69.8
Gohir.A04G107700 Gossypium hirsutum HOM05D004567 ORTHO05D005726 3.3e-210 735.3 543 68.0
TAR369G0463 Trochodendron aralioides HOM05D004567 ORTHO05D005726 3.3e-210 735.3 553 68.7
Atru.chr10.1157 Acer truncatum HOM05D004567 ORTHO05D005726 3.6e-209 731.9 534 69.3
GSVIVG01012041001 Vitis vinifera HOM05D004567 ORTHO05D005726 1.0e-208 730.3 547 68.4
Haze_02919 Corylus avellana HOM05D004567 ORTHO05D005726 1.7e-206 723.0 525 69.9
Prupe.2G113700 Prunus persica HOM05D004567 ORTHO05D005726 2.2e-206 722.6 506 71.9
RcHm_v2.0_Chr1g0343571 Rosa chinensis HOM05D004567 ORTHO05D005726 1.6e-204 716.5 506 71.3
QL04p025799 Quercus lobata HOM05D004567 ORTHO05D005726 2.0e-204 716.1 534 68.7
CANSAT25G2547 Cannabis sativa HOM05D004567 ORTHO05D005726 1.3e-203 713.4 540 66.5
FvH4_7g08600 Fragaria vesca HOM05D004567 ORTHO05D005726 1.1e-202 710.3 529 68.1
FAN03G0634 Fragaria x ananassa HOM05D004567 ORTHO05D005726 3.3e-202 708.8 529 67.9
FAN10G2749 Fragaria x ananassa HOM05D004567 ORTHO05D005726 3.3e-202 708.8 529 67.9
FAN01G2992 Fragaria x ananassa HOM05D004567 ORTHO05D005726 4.3e-202 708.4 529 68.4
FAN06G1075 Fragaria x ananassa HOM05D004567 ORTHO05D005726 9.5e-202 707.2 529 67.9
MD07G1086800 Malus domestica HOM05D004567 ORTHO05D005726 2.8e-201 705.7 529 68.2
FAN10G3814 Fragaria x ananassa HOM05D004567 ORTHO05D005726 2.3e-200 702.6 529 67.9
Actinidia11176 Actinidia chinensis HOM05D004567 ORTHO05D005726 5.2e-200 701.4 547 65.8
Ca_23147_v3 Cicer arietinum L. HOM05D004567 ORTHO05D005726 3.2e-197 692.2 534 65.2
Eucgr.J00860 Eucalyptus grandis HOM05D004567 ORTHO05D005726 2.7e-196 689.1 517 66.9
Dinv41785 Davidia involucrata HOM05D004567 ORTHO05D005726 6.0e-196 688.0 503 71.2
MD02G1226800 Malus domestica HOM05D004567 ORTHO05D005726 7.8e-196 687.6 529 67.3
Lalb_Chr13g0290871 Lupinus albus HOM05D004567 ORTHO05D005726 1.3e-195 686.8 531 64.8
Gohir.D12G137700 Gossypium hirsutum HOM05D004567 ORTHO05D005726 3.9e-195 685.3 534 64.8
TPR.G17362 Trifolium pratense HOM05D004567 ORTHO05D005726 1.1e-194 683.7 538 65.1
CsaV3_4G009100 Cucumis sativus L. HOM05D004567 ORTHO05D005726 3.3e-194 682.2 539 64.9
THA.LOC104815215 Tarenaya hassleriana HOM05D004567 ORTHO05D005726 3.3e-194 682.2 538 63.8
Lj3g0010315 Lotus japonicus HOM05D004567 ORTHO05D005726 9.5e-194 680.6 541 64.5
MBI01_g01364_MAGBIO Magnolia biondii HOM05D004567 ORTHO05D005726 1.6e-193 679.9 555 64.1
Medtr8g009530 Medicago truncatula HOM05D004567 ORTHO05D005726 2.1e-193 679.5 539 63.3
Glyma.07G121300 Glycine max HOM05D004567 ORTHO05D005726 3.6e-193 678.7 549 63.9
Psat4g218760 Pisum sativum HOM05D004567 ORTHO05D005726 4.7e-193 678.3 536 63.8
Gorai.008G149200 Gossypium raimondii HOM05D004567 ORTHO05D005726 8.0e-193 677.6 536 64.4
AT1G50120 Arabidopsis thaliana HOM05D004567 ORTHO05D005726 2.6e-191 672.5 531 62.7
Oeu037755.1 Olea europaea HOM05D004567 ORTHO05D005726 2.6e-191 672.5 542 64.2
Phvul.010G040700 Phaseolus vulgaris HOM05D004567 ORTHO05D005726 5.8e-191 671.4 537 63.1
Sed0017461 Sechium edule HOM05D004567 ORTHO05D005726 7.5e-191 671.0 544 63.1
VMungo0331G0285 Vigna mungo HOM05D004567 ORTHO05D005726 9.8e-191 670.6 534 63.5
Cc00_g04630 Coffea canephora HOM05D004567 ORTHO05D005726 1.7e-190 669.8 538 63.8
Sopen11g010070 Solanum pennellii HOM05D004567 ORTHO05D005726 1.2e-188 663.7 537 62.0
AL1G57750 Arabidopsis lyrata HOM05D004567 ORTHO05D005726 2.7e-188 662.5 522 63.0
Nn4g22147 Nelumbo nucifera HOM05D004567 ORTHO05D005726 2.7e-188 662.5 548 63.1
CiPaw.14G015900 Carya illinoinensis HOM05D004567 ORTHO05D005726 5.0e-187 658.3 490 68.2
DCAR_011423 Daucus carota HOM05D004567 ORTHO05D005726 3.3e-186 655.6 538 61.5
PSO063G1783 Papaver somniferum HOM05D004567 ORTHO05D005726 6.2e-185 651.4 547 63.1
CSS0021756 Camellia sinensis var. sinensis HOM05D004567 ORTHO05D005726 4.0e-184 648.7 554 62.5
Thhalv10011376m.g Eutrema salsugineum HOM05D004567 ORTHO05D005726 1.2e-183 647.1 532 60.7
Peaxi162Scf01013g00124 Petunia axillaris HOM05D004567 ORTHO05D005726 3.4e-183 645.6 500 63.8
CARHR040180 Cardamine hirsuta HOM05D004567 ORTHO05D005726 5.8e-183 644.8 532 61.3
vmacro12414 Vaccinium macrocarpon HOM05D004567 ORTHO05D005726 7.5e-183 644.4 689 52.1
arahy.Tifrunner.gnm1.ann1.JL30IG Arachis hypogaea HOM05D004567 ORTHO05D005726 2.2e-182 642.9 542 62.4
arahy.Tifrunner.gnm1.ann1.2EVD6N Arachis hypogaea HOM05D004567 ORTHO05D005726 2.9e-182 642.5 525 63.4
Migut.N03351 Erythranthe guttata HOM05D004567 ORTHO05D005726 4.9e-182 641.7 533 62.7
Sp1g37000 Schrenkiella parvula HOM05D004567 ORTHO05D005726 6.4e-182 641.3 532 60.5
Carub.0001s3927 Capsella rubella HOM05D004567 ORTHO05D005726 8.3e-182 641.0 533 60.6
Aa31LG10G4020 Aethionema arabicum HOM05D004567 ORTHO05D005726 2.4e-181 639.4 557 59.6
PSO832G3127 Papaver somniferum HOM05D004567 ORTHO05D005726 2.1e-180 636.3 547 61.4
EL10Ac9g22943 Beta vulgaris HOM05D004567 ORTHO05D005726 1.0e-179 634.0 556 58.6
Aqoxy7G00425 Aquilegia oxysepala HOM05D004567 ORTHO05D005726 3.3e-178 629.0 563 58.6
AUR62017692 Chenopodium quinoa HOM05D004567 ORTHO05D005726 3.3e-178 629.0 574 57.1
Gohir.A12G134100 Gossypium hirsutum HOM05D004567 ORTHO05D005726 3.6e-177 625.5 539 60.7
Ah.01g012240 Amaranthus hybridus HOM05D004567 ORTHO05D005726 1.8e-176 623.2 543 57.8
SGA_v2.0_scaffold24G10556 Striga asiatica HOM05D004567 ORTHO05D005726 2.4e-176 622.9 513 62.0
Glyma.03G102500 Glycine max HOM05D004567 ORTHO05D005726 4.0e-176 622.1 548 60.9
PSO339G1936 Papaver somniferum HOM05D004567 ORTHO05D005726 1.7e-174 616.7 545 60.9
SalBow7G4790 Salvia bowleyana HOM05D004567 ORTHO05D005726 3.8e-174 615.5 545 59.1
A08p03320 Brassica napus HOM05D004567 ORTHO05D005726 4.1e-173 612.1 538 58.6
BcaB04g17271 Brassica carinata HOM05D004567 ORTHO05D005726 3.5e-172 609.0 540 59.1
BolC3t21263H Brassica oleracea HOM05D004567 ORTHO05D005726 4.6e-172 608.6 539 58.3
ECA246G0539 Erigeron canadensis HOM05D004567 ORTHO05D005726 4.6e-172 608.6 547 58.0
BraA06t23544Z Brassica rapa HOM05D004567 ORTHO05D005726 7.8e-172 607.8 534 58.1
BolC6t35627H Brassica oleracea HOM05D004567 ORTHO05D005726 1.0e-171 607.4 534 58.1
C03p89490 Brassica napus HOM05D004567 ORTHO05D005726 3.3e-170 602.4 539 57.7
BcaC08g43196 Brassica carinata HOM05D004567 ORTHO05D005726 4.3e-170 602.1 534 57.7
Lj7A481G48 Lonicera japonica HOM05D004567 ORTHO05D005726 1.2e-169 600.5 551 61.2
Lsat_1_v5_gn_5_37660 Lactuca sativa HOM05D004567 ORTHO05D005726 2.8e-169 599.4 504 60.3
C06p05010 Brassica napus HOM05D004567 ORTHO05D005726 4.7e-169 598.6 534 57.3
Sc11g0003400 Simmondsia chinensis HOM05D004567 ORTHO05D005726 1.1e-168 597.4 532 57.3
ATR0605G273 Amborella trichopoda HOM05D004567 ORTHO05D005726 1.2e-167 594.0 554 54.0
BcaB07g33468 Brassica carinata HOM05D004567 ORTHO05D005726 1.5e-167 593.6 527 58.6
BraA08t32365Z Brassica rapa HOM05D004567 ORTHO05D005726 2.0e-167 593.2 579 54.1
Duzib052G0538 Durio zibethinus HOM05D004567 ORTHO05D005726 8.4e-166 587.8 537 59.4
A06p03360 Brassica napus HOM05D004567 ORTHO05D005726 2.4e-165 586.3 543 56.0
HanXRQChr12g0379741 Helianthus annuus HOM05D004567 ORTHO05D005726 8.7e-163 577.8 511 59.9
Solyc11g019960.2 Solanum lycopersicum HOM05D004567 ORTHO05D005726 8.7e-163 577.8 490 60.8
Nitab4.5_0000167g0100 Nicotiana tabacum HOM05D004567 ORTHO05D005726 6.4e-158 561.6 411 67.4
AUR62015228 Chenopodium quinoa HOM05D004567 ORTHO05D005726 5.4e-157 558.5 544 55.1
CAN.G2.11 Capsicum annuum HOM05D004567 ORTHO05D005726 9.3e-157 557.8 438 63.2
Rhsim06G0125800 Rhododendron simsii HOM05D004567 ORTHO05D005726 1.3e-145 520.8 695 47.5
HPP92_002998 Vanilla planifolia HOM05D004567 ORTHO05D005726 5.3e-144 515.4 543 51.7
CDE02G2175 Ceratophyllum demersum HOM05D004567 ORTHO05D005726 3.4e-143 512.7 491 56.6
Nn3g16289 Nelumbo nucifera HOM05D004567 ORTHO05D005726 6.0e-140 501.9 473 56.7
CDE08G0826 Ceratophyllum demersum HOM05D004567 ORTHO05D005726 1.5e-138 497.3 554 51.3
Cpa.g.sc0.161 Carica papaya HOM05D004567 ORTHO05D005726 4.6e-132 475.7 340 71.5
Hund24369 Selenicereus undatus HOM05D004567 ORTHO05D005726 1.0e-126 458.0 374 62.8
PGSC0003DMG401027620 Solanum tuberosum HOM05D004567 ORTHO05D005726 8.5e-118 428.3 322 67.1
Oeu029993.1 Olea europaea HOM05D004567 ORTHO05D005726 3.3e-114 416.4 339 64.0
MELO3C018973.2 Cucumis melo HOM05D004567 ORTHO05D005726 1.7e-113 414.1 389 58.1
Nitab4.5_0004158g0010 Nicotiana tabacum HOM05D004567 ORTHO05D005726 6.3e-113 412.1 322 65.2
A06p03590 Brassica napus HOM05D004567 ORTHO05D005726 2.2e-105 387.1 326 63.5
Mapoly0026s0045 Marchantia polymorpha HOM05D004567 ORTHO05D005726 2.5e-101 373.6 527 40.4
Pp3c23_19720 Physcomitrium patens HOM05D004567 ORTHO05D005726 6.8e-99 365.5 533 40.7
Pp3c20_6950 Physcomitrium patens HOM05D004567 ORTHO05D005726 6.3e-97 359.0 527 40.8
Os06g0618600 Oryza sativa ssp. japonica HOM05D004567 ORTHO05D005726 2.7e-95 353.6 376 51.9
AagrBONN_evm.TU.Sc2ySwM_228.3324 Anthoceros agrestis HOM05D004567 ORTHO05D005726 2.1e-92 344.0 529 36.5
unitig_578.g16282 Utricularia gibba HOM05D004567 ORTHO05D005726 2.2e-89 334.0 358 51.1
SMO367G1304 Selaginella moellendorffii HOM05D004567 ORTHO05D005726 2.7e-87 327.0 508 37.6
ClCG10G008360 Citrullus lanatus HOM05D004567 ORTHO05D005726 1.1e-85 321.6 339 55.2
Zm00001eb066810 Zea mays HOM05D004567 ORTHO05D005726 1.0e-83 315.1 407 46.7
SEGI_15833 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 9.8e-82 308.5 334 49.1
BraA06t23566Z Brassica rapa HOM05D004567 ORTHO05D005726 2.3e-62 244.2 147 77.6
Nitab4.5_0004158g0020 Nicotiana tabacum HOM05D004567 ORTHO05D005726 6.2e-60 236.1 199 58.3
Cfa022169 Carpinus fangiana HOM05D004567 ORTHO05D005726 2.6e-58 230.7 132 83.3
C06p05100 Brassica napus HOM05D004567 ORTHO05D005726 2.9e-57 227.3 180 62.8
Duzib248G1520 Durio zibethinus HOM05D004567 ORTHO05D005726 1.4e-56 224.9 134 78.4
Oeu029992.1 Olea europaea HOM05D004567 ORTHO05D005726 4.2e-56 223.4 151 69.5
PGSC0003DMG402027620 Solanum tuberosum HOM05D004567 ORTHO05D005726 3.3e-53 213.8 177 58.8
unitig_44.g31559 Utricularia gibba HOM05D004567 ORTHO05D005726 1.4e-51 208.4 140 68.6
Oeu029994.1 Olea europaea HOM05D004567 ORTHO05D005726 8.7e-46 189.1 207 52.2
ClCG10G008380 Citrullus lanatus HOM05D004567 ORTHO05D005726 2.1e-44 184.5 104 78.8
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 2.9e-41 174.1 583 25.9
Rhsim06G0125500 Rhododendron simsii HOM05D004567 ORTHO05D005726 9.3e-32 142.5 158 51.3
ClCG10G008350 Citrullus lanatus HOM05D004567 ORTHO05D005726 3.3e-29 134.0 121 57.9
Rhsim04G0129600 Rhododendron simsii HOM05D004567 ORTHO05D005726 4.3e-29 133.7 99 63.6
Cpa.g.sc0.162 Carica papaya HOM05D004567 ORTHO05D005726 1.6e-28 131.7 98 64.3
unitig_578.g16281 Utricularia gibba HOM05D004567 ORTHO05D005726 7.1e-24 116.3 133 45.9
Sed0015165 Sechium edule HOM05D004567 ORTHO05D005726 9.3e-24 115.9 121 49.6
FAN11G1323 Fragaria x ananassa HOM05D004567 ORTHO05D005726 1.8e-22 111.7 98 57.1
SHI31088 Sapria himalayana HOM05D004567 ORTHO05D005726 3.3e-21 107.5 95 57.9
Rhsim06G0125600 Rhododendron simsii HOM05D004567 ORTHO05D005726 1.6e-20 105.1 81 66.7
Rhsim06G0125400 Rhododendron simsii HOM05D004567 ORTHO05D005726 4.1e-19 100.5 53 83.0
Actinidia24396 Actinidia chinensis HOM05D004567 ORTHO05D005726 9.4e-16 89.4 97 51.5
QL01p003984 Quercus lobata HOM05D004567 ORTHO05D000318 1.6e-15 88.6 69 60.9
SEGI_26710 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 2.0e-13 81.6 109 45.0
TAR623G0420 Trochodendron aralioides HOM05D004567 ORTHO05D037809 2.2e-12 78.2 151 38.4
Rhsim04G0129400 Rhododendron simsii HOM05D004567 ORTHO05D005726 1.8e-11 75.1 104 44.2
Sed0023875 Sechium edule HOM05D004567 ORTHO05D005726 5.0e-09 67.0 76 42.1
SEGI_29421 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 8.5e-09 66.2 76 40.8
Cre06.g258400 Chlamydomonas reinhardtii HOM05D004567 ORTHO05D005726 7.9e-07 59.7 126 24.6


User provided reference genes

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