Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra07G0056700 Salix brachista HOM05D003670 ORTHO05D004767 3.1e-226 788.1 387 100.0
Potri.007G069300 Populus trichocarpa HOM05D003670 ORTHO05D004767 6.0e-190 667.5 392 85.7
Manes.06G175700 Manihot esculenta HOM05D003670 ORTHO05D004767 5.3e-170 601.3 395 76.2
CiPaw.11G061900 Carya illinoinensis HOM05D003670 ORTHO05D004767 2.0e-169 599.4 397 76.3
Manes.14G010300 Manihot esculenta HOM05D003670 ORTHO05D004767 2.2e-168 595.9 395 75.7
CSS0006756 Camellia sinensis var. sinensis HOM05D003670 ORTHO05D004767 6.1e-166 587.8 396 75.0
QL04p088520 Quercus lobata HOM05D003670 ORTHO05D004767 1.4e-165 586.6 421 71.3
Hma1.2p1_0151F.1_g067325 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 1.1e-164 583.6 397 74.8
PGR031G1669 Punica granatum HOM05D003670 ORTHO05D004767 2.6e-164 582.4 399 73.9
Gohir.A13G123400 Gossypium hirsutum HOM05D003670 ORTHO05D004767 5.7e-164 581.3 396 73.5
Gohir.D13G127300 Gossypium hirsutum HOM05D003670 ORTHO05D004767 5.7e-164 581.3 396 73.7
Ciclev10005196m.g Citrus clementina HOM05D003670 ORTHO05D004767 9.7e-164 580.5 385 75.3
Gorai.013G142500 Gossypium raimondii HOM05D003670 ORTHO05D004767 1.7e-163 579.7 397 73.8
TWI39G0091 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 4.8e-163 578.2 397 74.8
TWI38G1711 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 6.3e-163 577.8 395 75.7
Lj3g0014239 Lotus japonicus HOM05D003670 ORTHO05D004767 1.1e-162 577.0 397 73.6
Thecc.07G180400 Theobroma cacao HOM05D003670 ORTHO05D004767 1.1e-162 577.0 397 73.8
GSVIVG01036786001 Vitis vinifera HOM05D003670 ORTHO05D004767 1.1e-162 577.0 394 73.1
MD05G1228000 Malus domestica HOM05D003670 ORTHO05D004767 4.1e-162 575.1 396 72.7
MD10G1208500 Malus domestica HOM05D003670 ORTHO05D004767 4.5e-161 571.6 396 73.0
Glyma.08G167100 Glycine max HOM05D003670 ORTHO05D004767 1.3e-160 570.1 400 73.0
COL.COLO4_32264 Corchorus olitorius HOM05D003670 ORTHO05D004767 1.7e-160 569.7 362 76.0
Rhsim06G0242300 Rhododendron simsii HOM05D003670 ORTHO05D004767 2.9e-160 568.9 419 70.2
Prupe.4G134300 Prunus persica HOM05D003670 ORTHO05D004767 6.5e-160 567.8 398 72.1
Phvul.005G050400 Phaseolus vulgaris HOM05D003670 ORTHO05D004767 2.5e-159 565.8 400 72.2
Potri.005G095300 Populus trichocarpa HOM05D003670 ORTHO05D004767 7.2e-159 564.3 324 84.9
Eucgr.F04458 Eucalyptus grandis HOM05D003670 ORTHO05D004767 3.6e-158 562.0 394 72.3
Sabra05G0078800 Salix brachista HOM05D003670 ORTHO05D004767 1.0e-157 560.5 364 76.9
Lalb_Chr25g0284691 Lupinus albus HOM05D003670 ORTHO05D004767 3.0e-157 558.9 398 72.1
Duzib187G0441 Durio zibethinus HOM05D003670 ORTHO05D004767 6.7e-157 557.8 335 79.1
FvH4_3g14990 Fragaria vesca HOM05D003670 ORTHO05D004767 1.1e-156 557.0 396 70.7
RcHm_v2.0_Chr5g0024611 Rosa chinensis HOM05D003670 ORTHO05D004767 1.1e-156 557.0 397 72.0
FAN11G2825 Fragaria x ananassa HOM05D003670 ORTHO05D004767 2.0e-156 556.2 396 70.7
FAN21G1395 Fragaria x ananassa HOM05D003670 ORTHO05D004767 2.0e-156 556.2 396 70.5
Cfa022976 Carpinus fangiana HOM05D003670 ORTHO05D004767 2.6e-156 555.8 397 71.8
HanXRQChr11g0335601 Helianthus annuus HOM05D003670 ORTHO05D004767 3.3e-156 555.4 386 71.2
Lsat_1_v5_gn_7_110680 Lactuca sativa HOM05D003670 ORTHO05D004767 3.3e-156 555.4 395 70.6
TAR583G0001 Trochodendron aralioides HOM05D003670 ORTHO05D004767 4.4e-156 555.1 392 70.9
Nitab4.5_0006241g0010 Nicotiana tabacum HOM05D003670 ORTHO05D004767 7.4e-156 554.3 396 70.2
TPR.G33813 Trifolium pratense HOM05D003670 ORTHO05D004767 7.4e-156 554.3 396 70.5
VMungo1080G1660 Vigna mungo HOM05D003670 ORTHO05D004767 1.7e-155 553.1 389 72.5
Cc05_g16310 Coffea canephora HOM05D003670 ORTHO05D004767 2.8e-155 552.4 397 69.8
Peaxi162Scf00452g00333 Petunia axillaris HOM05D003670 ORTHO05D004767 3.7e-155 552.0 386 70.2
FAN25G1710 Fragaria x ananassa HOM05D003670 ORTHO05D004767 4.8e-155 551.6 410 69.5
Migut.H01671 Erythranthe guttata HOM05D003670 ORTHO05D004767 6.3e-155 551.2 400 70.0
CANSAT80G2697 Cannabis sativa HOM05D003670 ORTHO05D004767 8.2e-155 550.8 397 69.8
Medtr2g067080 Medicago truncatula HOM05D003670 ORTHO05D004767 2.4e-154 549.3 397 70.5
Psat1g013760 Pisum sativum HOM05D003670 ORTHO05D004767 4.1e-154 548.5 392 70.2
Sopen07g034740 Solanum pennellii HOM05D003670 ORTHO05D004767 4.1e-154 548.5 393 71.5
Aa31LG4G1790 Aethionema arabicum HOM05D003670 ORTHO05D004767 5.3e-154 548.1 384 70.8
PGSC0003DMG400022232 Solanum tuberosum HOM05D003670 ORTHO05D004767 5.3e-154 548.1 395 71.4
vmacro11699 Vaccinium macrocarpon HOM05D003670 ORTHO05D004767 7.0e-154 547.7 347 77.2
ECA236G3562 Erigeron canadensis HOM05D003670 ORTHO05D004767 9.1e-154 547.4 335 78.2
Sp5g34280 Schrenkiella parvula HOM05D003670 ORTHO05D004767 9.1e-154 547.4 396 69.2
CAN.G943.51 Capsicum annuum HOM05D003670 ORTHO05D004767 2.0e-153 546.2 397 70.8
Ah.10g033690 Amaranthus hybridus HOM05D003670 ORTHO05D004767 7.7e-153 544.3 328 77.4
MBI02_g18168_MAGBIO Magnolia biondii HOM05D003670 ORTHO05D004767 7.7e-153 544.3 395 70.9
Solyc07g066580.3 Solanum lycopersicum HOM05D003670 ORTHO05D004767 1.0e-152 543.9 392 71.2
Ca_03600_v3 Cicer arietinum L. HOM05D003670 ORTHO05D004767 1.7e-152 543.1 367 73.3
Nitab4.5_0000029g0340 Nicotiana tabacum HOM05D003670 ORTHO05D004767 2.2e-152 542.7 361 72.9
CARHR016930 Cardamine hirsuta HOM05D003670 ORTHO05D004767 3.8e-152 542.0 375 69.3
CsaV3_3G018980 Cucumis sativus L. HOM05D003670 ORTHO05D004767 5.0e-152 541.6 396 68.4
Thhalv10018699m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 5.0e-152 541.6 398 68.8
PSO675G6901 Papaver somniferum HOM05D003670 ORTHO05D004767 6.5e-152 541.2 397 68.5
AL2G39700 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 4.2e-151 538.5 395 68.1
PSO541G1524 Papaver somniferum HOM05D003670 ORTHO05D004767 4.2e-151 538.5 397 68.0
Sed0012107 Sechium edule HOM05D003670 ORTHO05D004767 1.2e-150 537.0 396 68.4
Oeu002796.1 Olea europaea HOM05D003670 ORTHO05D004767 2.1e-150 536.2 332 76.2
MSTRG.14566 Avicennia marina HOM05D003670 ORTHO05D004767 2.7e-150 535.8 399 69.4
CARHR072860 Cardamine hirsuta HOM05D003670 ORTHO05D004767 2.7e-150 535.8 330 75.8
Aqoxy1G01484 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 3.6e-150 535.4 394 68.0
Nn7g37780 Nelumbo nucifera HOM05D003670 ORTHO05D004767 4.7e-150 535.0 332 76.8
Nitab4.5_0005765g0040 Nicotiana tabacum HOM05D003670 ORTHO05D004767 4.7e-150 535.0 396 68.9
AT1G79230 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 6.1e-150 534.6 399 67.2
BcaB02g07206 Brassica carinata HOM05D003670 ORTHO05D004767 8.0e-150 534.3 368 69.8
THA.LOC104812362 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 8.0e-150 534.3 387 67.4
Carub.0002s2610 Capsella rubella HOM05D003670 ORTHO05D004767 1.8e-149 533.1 397 67.5
EL10Ac2g03264 Beta vulgaris HOM05D003670 ORTHO05D004767 5.2e-149 531.6 397 67.0
ATR0763G120 Amborella trichopoda HOM05D003670 ORTHO05D004767 8.8e-149 530.8 332 77.1
AUR62037644 Chenopodium quinoa HOM05D003670 ORTHO05D004767 2.6e-148 529.3 399 67.2
Peaxi162Scf00006g00159 Petunia axillaris HOM05D003670 ORTHO05D004767 3.3e-148 528.9 398 67.6
THA.LOC104813608 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 5.7e-148 528.1 380 68.4
BcaC08g45368 Brassica carinata HOM05D003670 ORTHO05D004767 9.7e-148 527.3 394 67.5
C06p30000 Brassica napus HOM05D003670 ORTHO05D004767 9.7e-148 527.3 394 67.5
BraA07t31943Z Brassica rapa HOM05D003670 ORTHO05D004767 1.7e-147 526.6 392 66.3
Carub.0001s1620 Capsella rubella HOM05D003670 ORTHO05D004767 2.8e-147 525.8 399 65.7
BolC6t38160H Brassica oleracea HOM05D003670 ORTHO05D004767 4.8e-147 525.0 394 67.3
A07p27230 Brassica napus HOM05D003670 ORTHO05D004767 6.3e-147 524.6 394 67.5
BolC5t30186H Brassica oleracea HOM05D003670 ORTHO05D004767 6.3e-147 524.6 397 65.5
BraA07t30367Z Brassica rapa HOM05D003670 ORTHO05D004767 6.3e-147 524.6 394 67.5
A07p44350 Brassica napus HOM05D003670 ORTHO05D004767 1.8e-146 523.1 392 66.3
BcaC05g25571 Brassica carinata HOM05D003670 ORTHO05D004767 2.4e-146 522.7 397 65.5
AUR62039184 Chenopodium quinoa HOM05D003670 ORTHO05D004767 2.4e-146 522.7 386 67.1
Thhalv10007910m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 3.1e-146 522.3 332 74.1
C05p14650 Brassica napus HOM05D003670 ORTHO05D004767 5.3e-146 521.5 397 65.2
Duzib213G1009 Durio zibethinus HOM05D003670 ORTHO05D004767 5.3e-146 521.5 402 67.9
Glyma.15G260300 Glycine max HOM05D003670 ORTHO05D004767 7.0e-146 521.2 368 73.4
Solyc02g078990.4 Solanum lycopersicum HOM05D003670 ORTHO05D004767 9.1e-146 520.8 335 74.3
BcaB05g25180 Brassica carinata HOM05D003670 ORTHO05D004767 1.2e-145 520.4 335 74.9
Sopen02g023800 Solanum pennellii HOM05D003670 ORTHO05D004767 1.6e-145 520.0 335 74.9
BcaB02g06624 Brassica carinata HOM05D003670 ORTHO05D004767 1.1e-143 513.8 395 65.1
Zm00001eb031400 Zea mays HOM05D003670 ORTHO05D004767 1.1e-143 513.8 317 76.3
unitig_578.g16333 Utricularia gibba HOM05D003670 ORTHO05D004767 5.5e-143 511.5 332 70.5
Os12g0608600 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 7.2e-143 511.1 325 74.2
BraA06t24401Z Brassica rapa HOM05D003670 ORTHO05D004767 1.6e-142 510.0 397 65.2
AL1G28600 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 2.7e-142 509.2 331 73.1
A06p12380 Brassica napus HOM05D003670 ORTHO05D004767 1.4e-141 506.9 393 63.9
Sp1g14610 Schrenkiella parvula HOM05D003670 ORTHO05D004767 1.2e-140 503.8 337 70.3
HPP92_013192 Vanilla planifolia HOM05D003670 ORTHO05D004767 3.7e-139 498.8 396 63.4
Aa31LG7G1000 Aethionema arabicum HOM05D003670 ORTHO05D004767 2.4e-138 496.1 334 70.1
Oeu043724.2 Olea europaea HOM05D003670 ORTHO05D004767 4.1e-138 495.4 321 72.6
AT1G16460 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 9.1e-138 494.2 331 71.3
Hund20101 Selenicereus undatus HOM05D003670 ORTHO05D004767 5.9e-137 491.5 397 64.5
arahy.Tifrunner.gnm1.ann1.36F1KB Arachis hypogaea HOM05D003670 ORTHO05D004767 2.3e-136 489.6 368 69.3
DCAR_019919 Daucus carota HOM05D003670 ORTHO05D004767 1.1e-135 487.3 396 63.4
SGA_v2.0_scaffold186G40197 Striga asiatica HOM05D003670 ORTHO05D004767 9.5e-135 484.2 323 69.0
MSTRG.7076 Avicennia marina HOM05D003670 ORTHO05D004767 6.1e-134 481.5 325 68.9
Sc06g0002800 Simmondsia chinensis HOM05D003670 ORTHO05D004767 1.2e-132 477.2 359 68.0
ClCG05G009800 Citrullus lanatus HOM05D003670 ORTHO05D000003 7.5e-132 474.6 396 61.4
arahy.Tifrunner.gnm1.ann1.YZ7E83 Arachis hypogaea HOM05D003670 ORTHO05D004767 3.7e-131 472.2 368 68.2
Nitab4.5_0000388g0140 Nicotiana tabacum HOM05D003670 ORTHO05D004767 5.9e-129 464.9 323 73.1
SEGI_21826 Sequoiadendron giganteum HOM05D003670 ORTHO05D004767 5.9e-129 464.9 325 68.3
unitig_8.g4750 Utricularia gibba HOM05D003670 ORTHO05D004767 1.7e-128 463.4 393 61.3
MELO3C019489.2 Cucumis melo HOM05D003670 ORTHO05D004767 1.1e-127 460.7 324 69.8
Lj2A15G76 Lonicera japonica HOM05D003670 ORTHO05D004767 5.2e-125 451.8 367 65.9
C06p53140 Brassica napus HOM05D003670 ORTHO05D004767 1.7e-123 446.8 289 73.7
BolC6t40330H Brassica oleracea HOM05D003670 ORTHO05D004767 1.7e-123 446.8 289 73.7
DCAR_016837 Daucus carota HOM05D003670 ORTHO05D004767 1.7e-123 446.8 312 65.7
BcaC08g47490 Brassica carinata HOM05D003670 ORTHO05D004767 5.4e-122 441.8 396 58.8
Haze_07818 Corylus avellana HOM05D003670 ORTHO05D004767 6.6e-120 434.9 328 69.8
QL04p088965 Quercus lobata HOM05D003670 ORTHO05D004767 2.5e-119 433.0 263 80.6
Os02g0167100 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 1.4e-117 427.2 315 60.3
SGA_v2.0_scaffold49G18190 Striga asiatica HOM05D003670 ORTHO05D004767 2.0e-116 423.3 278 73.0
Mapoly0058s0078 Marchantia polymorpha HOM05D003670 ORTHO05D004767 9.2e-114 414.5 332 58.1
AagrBONN_evm.TU.Sc2ySwM_344.5346 Anthoceros agrestis HOM05D003670 ORTHO05D004767 6.6e-112 408.3 321 61.4
Zm00001eb207410 Zea mays HOM05D003670 ORTHO05D004767 3.3e-111 406.0 324 59.3
Dinv19592 Davidia involucrata HOM05D003670 ORTHO05D004767 5.2e-109 398.7 282 70.9
CDE06G2006 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 1.3e-104 384.0 233 74.2
Rhsim05G0210500 Rhododendron simsii HOM05D003670 ORTHO05D004767 3.9e-104 382.5 247 74.9
SMO119G0061 Selaginella moellendorffii HOM05D003670 ORTHO05D004767 1.8e-101 373.6 312 59.3
Pp3c9_17670 Physcomitrium patens HOM05D003670 ORTHO05D004767 2.4e-101 373.2 316 54.7
HPP92_013209 Vanilla planifolia HOM05D003670 ORTHO05D004767 1.0e-96 357.8 396 51.3
Actinidia12766 Actinidia chinensis HOM05D003670 ORTHO05D004767 2.4e-93 346.7 232 75.4
CDE02G0962 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 5.8e-92 342.0 233 68.7
Cpa.g.sc34.17 Carica papaya HOM05D003670 ORTHO05D004767 4.9e-91 339.0 214 76.6
FAN16G2550 Fragaria x ananassa HOM05D003670 ORTHO05D004767 2.5e-87 326.6 215 72.6
MD05G1228700 Malus domestica HOM05D003670 ORTHO05D004767 3.3e-87 326.2 215 73.0
RcHm_v2.0_Chr5g0024731 Rosa chinensis HOM05D003670 ORTHO05D004767 6.4e-75 285.4 194 74.7
A02p22680 Brassica napus HOM05D003670 ORTHO05D004767 5.6e-71 272.3 347 45.2
C02p36310 Brassica napus HOM05D003670 ORTHO05D004767 3.7e-70 269.6 219 62.6
CBR_g17038 Chara braunii HOM05D003670 ORTHO05D004767 1.8e-69 267.3 377 40.3
MCO09G588 Micromonas commoda HOM05D003670 ORTHO05D004767 4.6e-65 252.7 316 44.3
PRCOL_00006295 Prasinoderma coloniale HOM05D003670 ORTHO05D004767 8.7e-64 248.4 319 42.9
Cre13.g607050 Chlamydomonas reinhardtii HOM05D003670 ORTHO05D004767 4.1e-61 239.6 320 40.9
Aqoxy1G03000 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 2.6e-52 210.3 114 83.3
Hma1.2p1_0269F.1_g107810 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 4.5e-52 209.5 153 69.3
MD05G1228600 Malus domestica HOM05D003670 ORTHO05D004767 1.1e-47 194.9 181 60.8
Cfa026738 Carpinus fangiana HOM05D003670 ORTHO05D004767 1.5e-39 167.9 302 36.4
BolC1t01654H Brassica oleracea HOM05D003670 ORTHO05D004767 4.1e-37 159.8 131 64.9
C03p82980 Brassica napus HOM05D003670 ORTHO05D004767 1.6e-36 157.9 94 81.9
BcaC01g00674 Brassica carinata HOM05D003670 ORTHO05D004767 3.5e-36 156.8 92 82.6
C01p17180 Brassica napus HOM05D003670 ORTHO05D004767 1.3e-35 154.8 131 63.4
BcaC04g18607 Brassica carinata HOM05D003670 ORTHO05D004767 2.2e-35 154.1 92 81.5
BolC9t58925H Brassica oleracea HOM05D003670 ORTHO05D004767 1.1e-34 151.8 131 61.8
CAN.G891.1 Capsicum annuum HOM05D003670 ORTHO05D004767 1.5e-34 151.4 94 78.7
Oeu010650.2 Olea europaea HOM05D003670 ORTHO05D004767 2.2e-30 137.5 101 69.3
Lsat_1_v5_gn_4_93521 Lactuca sativa HOM05D003670 ORTHO05D004767 1.7e-27 127.9 66 87.9
Cpa.g.sc34.16 Carica papaya HOM05D003670 ORTHO05D004767 1.2e-25 121.7 94 66.0
BolC7t42971H Brassica oleracea HOM05D003670 ORTHO05D004767 1.2e-23 115.2 133 50.4
Mapoly0032s0014 Marchantia polymorpha HOM05D003670 ORTHO05D031137 2.6e-23 114.0 357 26.3
Solyc06g009850.3 Solanum lycopersicum HOM05D003670 ORTHO05D014971 7.5e-23 112.5 115 53.9
BcaC06g34801 Brassica carinata HOM05D003670 ORTHO05D004767 9.8e-23 112.1 92 65.2
Oeu034061.1 Olea europaea HOM05D003670 ORTHO05D020012 1.8e-21 107.8 93 59.1
BcaC03g15876 Brassica carinata HOM05D003670 ORTHO05D020012 2.5e-18 97.4 62 71.0
QL04p088979 Quercus lobata HOM05D003670 ORTHO05D004767 5.5e-18 96.3 99 57.6
CDE06G0877 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 1.0e-16 92.0 55 74.5
BcaC05g28269 Brassica carinata HOM05D003670 ORTHO05D014971 3.0e-16 90.5 51 80.4
AagrBONN_evm.TU.Sc2ySwM_117.2139 Anthoceros agrestis HOM05D003670 ORTHO05D031137 5.2e-16 89.7 242 29.8
Sopen06g004510 Solanum pennellii HOM05D003670 ORTHO05D014971 5.9e-12 76.3 45 77.8
BcaC02g07679 Brassica carinata HOM05D003670 ORTHO05D014971 1.0e-11 75.5 41 82.9
Solyc06g009860.1 Solanum lycopersicum HOM05D003670 ORTHO05D020012 1.4e-08 65.1 45 66.7
Lsat_1_v5_gn_8_160501 Lactuca sativa HOM05D003670 ORTHO05D002209 2.0e-07 61.2 33 87.9
Hma1.2p1_1039F.1_g250810 Hydrangea macrophylla HOM05D001854 ORTHO05D001800 2.6e-07 60.8 37 70.3
C06p40160 Brassica napus HOM05D003670 ORTHO05D020012 5.8e-07 59.7 42 64.3
BolC6t39098H Brassica oleracea HOM05D003670 ORTHO05D020012 5.8e-07 59.7 42 64.3


User provided reference genes

Program Settings