Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra07G0047700 Salix brachista HOM05D000726 ORTHO05D007554 0.0e+00 2327.0 1234 100.0
Potri.007G055400 Populus trichocarpa HOM05D000726 ORTHO05D007554 0.0e+00 1774.2 1218 79.5
Manes.13G112300 Manihot esculenta HOM05D000726 ORTHO05D007554 0.0e+00 1325.8 1244 60.0
TWI09G1290 Tripterygium wilfordii HOM05D000726 ORTHO05D007554 0.0e+00 1261.9 1176 59.9
Haze_15292 Corylus avellana HOM05D000726 ORTHO05D007554 0.0e+00 1258.0 1185 60.1
Atru.chr3.177 Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1230.3 1215 57.7
Cfa004123 Carpinus fangiana HOM05D000726 ORTHO05D007554 0.0e+00 1230.3 1185 58.9
QL06p039670 Quercus lobata HOM05D000726 ORTHO05D007554 0.0e+00 1230.3 1187 59.0
Ciclev10024730m.g Citrus clementina HOM05D000726 ORTHO05D007554 0.0e+00 1212.2 1174 57.2
CSS0015479 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1202.6 1181 56.9
CSS0022432 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1191.0 1181 56.9
MD02G1184600 Malus domestica HOM05D000726 ORTHO05D007554 0.0e+00 1187.6 1186 56.7
Atru.BG.105.p Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1185.6 1015 62.6
Gorai.007G222900 Gossypium raimondii HOM05D000726 ORTHO05D007554 0.0e+00 1182.2 1171 55.4
Gohir.D11G207900 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1181.0 1171 55.4
Gohir.A11G215400 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1180.2 1171 55.6
Duzib147G0272 Durio zibethinus HOM05D000726 ORTHO05D007554 0.0e+00 1179.5 1139 56.9
Actinidia36435 Actinidia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1163.3 1177 56.6
CANSAT01G3261 Cannabis sativa HOM05D000726 ORTHO05D007554 0.0e+00 1162.9 1126 57.5
RcHm_v2.0_Chr2g0138631 Rosa chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1152.9 1186 55.1
FAN05G3645 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1148.3 1175 55.2
vmacro05404 Vaccinium macrocarpon HOM05D000726 ORTHO05D007554 0.0e+00 1141.3 1207 53.5
FvH4_6g31560 Fragaria vesca HOM05D000726 ORTHO05D007554 0.0e+00 1139.8 1248 52.9
FAN14G0573 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1134.4 1248 52.7
FAN02G1686 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1133.2 1242 52.7
TAR376G0399 Trochodendron aralioides HOM05D000726 ORTHO05D007554 0.0e+00 1129.0 1190 54.9
arahy.Tifrunner.gnm1.ann1.1ZHU8Z Arachis hypogaea HOM05D000726 ORTHO05D007554 0.0e+00 1121.3 1172 53.4
Medtr5g015600 Medicago truncatula HOM05D000726 ORTHO05D007554 0.0e+00 1116.7 1152 54.2
SHI31766 Sapria himalayana HOM05D000726 ORTHO05D007554 0.0e+00 1112.8 1177 54.3
Phvul.002G011500 Phaseolus vulgaris HOM05D000726 ORTHO05D007554 0.0e+00 1107.8 1144 53.9
Glyma.01G193500 Glycine max HOM05D000726 ORTHO05D007554 0.0e+00 1107.4 1144 54.0
Ca_24700_v3 Cicer arietinum L. HOM05D000726 ORTHO05D007554 0.0e+00 1104.7 1108 55.9
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 0.0e+00 1101.3 1094 57.3
ClCG01G017520 Citrullus lanatus HOM05D000726 ORTHO05D007554 0.0e+00 1099.3 1184 52.9
Sed0012994 Sechium edule HOM05D000726 ORTHO05D007554 0.0e+00 1099.0 1183 52.7
COL.COLO4_11566 Corchorus olitorius HOM05D000726 ORTHO05D007554 0.0e+00 1097.4 1190 52.9
Nn4g25316 Nelumbo nucifera HOM05D000726 ORTHO05D007554 0.0e+00 1092.0 1175 53.2
Eucgr.H02305 Eucalyptus grandis HOM05D000726 ORTHO05D007554 0.0e+00 1091.6 1179 53.3
arahy.Tifrunner.gnm1.ann1.6361M0 Arachis hypogaea HOM05D000726 ORTHO05D007554 0.0e+00 1090.9 1149 53.4
MELO3C007629.2 Cucumis melo HOM05D000726 ORTHO05D007554 0.0e+00 1089.7 1128 53.9
PGR102G1358 Punica granatum HOM05D000726 ORTHO05D007554 0.0e+00 1088.9 1189 52.5
CsaV3_6G044070 Cucumis sativus L. HOM05D000726 ORTHO05D007554 0.0e+00 1088.2 1187 52.5
Hund16395 Selenicereus undatus HOM05D000726 ORTHO05D007554 0.0e+00 1084.7 1191 52.6
Sc03g0002340 Simmondsia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1084.3 1247 50.1
Lj2g0006912 Lotus japonicus HOM05D000726 ORTHO05D007554 0.0e+00 1079.3 1189 52.6
Lalb_Chr09g0323571 Lupinus albus HOM05D000726 ORTHO05D007554 0.0e+00 1076.6 1196 50.4
VMungo1215G2083 Vigna mungo HOM05D000726 ORTHO05D007554 0.0e+00 1076.2 1179 52.2
Nitab4.5_0001417g0030 Nicotiana tabacum HOM05D000726 ORTHO05D007554 3.7e-310 1068.5 1145 53.4
THA.LOC104819266 Tarenaya hassleriana HOM05D000726 ORTHO05D007554 4.6e-308 1061.6 1165 51.2
TPR.G34847 Trifolium pratense HOM05D000726 ORTHO05D007554 4.6e-308 1061.6 1143 52.3
Nitab4.5_0006813g0010 Nicotiana tabacum HOM05D000726 ORTHO05D007554 9.5e-306 1053.9 1159 52.5
Thecc.01G071800 Theobroma cacao HOM05D000726 ORTHO05D007554 9.9e-303 1043.9 881 62.3
Migut.H00354 Erythranthe guttata HOM05D000726 ORTHO05D007554 1.1e-301 1040.4 1218 50.4
Thhalv10023223m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 1.1e-301 1040.4 1111 52.1
EL10Ac6g15628 Beta vulgaris HOM05D000726 ORTHO05D007554 2.4e-301 1039.3 1186 51.0
MSTRG.23676 Avicennia marina HOM05D000726 ORTHO05D007554 1.6e-300 1036.6 1166 52.1
Aa31LG2G2150 Aethionema arabicum HOM05D000726 ORTHO05D007554 2.7e-300 1035.8 1163 50.9
Prupe.6G221900 Prunus persica HOM05D000726 ORTHO05D007554 3.0e-299 1032.3 887 63.2
CARHR056360 Cardamine hirsuta HOM05D000726 ORTHO05D007554 7.3e-298 1027.7 1100 52.1
Thhalv10000018m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 9.6e-298 1027.3 1100 52.0
PGSC0003DMG400009094 Solanum tuberosum HOM05D000726 ORTHO05D007554 1.1e-296 1023.8 1143 51.9
Aqoxy6G02647 Aquilegia oxysepala HOM05D000726 ORTHO05D007554 2.4e-296 1022.7 1172 50.9
AL2G19510 Arabidopsis lyrata HOM05D000726 ORTHO05D007554 2.4e-296 1022.7 1115 51.7
HanXRQChr12g0373111 Helianthus annuus HOM05D000726 ORTHO05D007554 1.2e-295 1020.4 1177 49.9
Sopen03g007820 Solanum pennellii HOM05D000726 ORTHO05D007554 3.4e-295 1018.8 1163 51.0
Peaxi162Scf00118g01929 Petunia axillaris HOM05D000726 ORTHO05D007554 4.4e-295 1018.5 1110 52.2
Psat2g171280 Pisum sativum HOM05D000726 ORTHO05D007554 1.1e-293 1013.8 1161 51.1
AT1G64960 Arabidopsis thaliana HOM05D000726 ORTHO05D007554 2.4e-293 1012.7 1171 49.6
CAN.G278.12 Capsicum annuum HOM05D000726 ORTHO05D007554 7.1e-293 1011.1 1095 51.7
Ah.03g140460 Amaranthus hybridus HOM05D000726 ORTHO05D007554 3.5e-292 1008.8 1097 51.5
FAN09G4729 Fragaria x ananassa HOM05D000726 ORTHO05D007554 3.5e-292 1008.8 1236 49.8
Solyc03g044020.4 Solanum lycopersicum HOM05D000726 ORTHO05D007554 3.5e-292 1008.8 1162 50.7
PSO541G0636 Papaver somniferum HOM05D000726 ORTHO05D007554 3.0e-291 1005.7 1204 49.3
Cc07_g07020 Coffea canephora HOM05D000726 ORTHO05D007554 3.9e-291 1005.4 1174 50.2
PSO675G6338 Papaver somniferum HOM05D000726 ORTHO05D007554 2.1e-289 999.6 1203 49.3
AUR62003999 Chenopodium quinoa HOM05D000726 ORTHO05D007554 4.8e-289 998.4 1174 50.2
Cpa.g.sc6.26 Carica papaya HOM05D000726 ORTHO05D007554 2.4e-288 996.1 839 64.0
Sp5g19220 Schrenkiella parvula HOM05D000726 ORTHO05D007554 1.2e-287 993.8 1174 48.8
Lsat_1_v5_gn_4_160781 Lactuca sativa HOM05D000726 ORTHO05D007554 3.5e-284 982.2 1123 51.2
Dinv26921 Davidia involucrata HOM05D000726 ORTHO05D007554 1.8e-283 979.9 1005 55.2
SGA_v2.0_scaffold15G07449 Striga asiatica HOM05D000726 ORTHO05D007554 3.9e-283 978.8 1228 48.4
BolC6t38979H Brassica oleracea HOM05D000726 ORTHO05D007554 1.4e-277 960.3 1167 47.8
C06p38860 Brassica napus HOM05D000726 ORTHO05D007554 2.4e-277 959.5 1164 47.9
BcaB03g15339 Brassica carinata HOM05D000726 ORTHO05D007554 6.0e-276 954.9 1167 48.2
BraA07t30892Z Brassica rapa HOM05D000726 ORTHO05D007554 5.1e-275 951.8 1101 49.4
Lj7A95G20 Lonicera japonica HOM05D000726 ORTHO05D007554 1.6e-273 946.8 1164 50.5
ECA232G2303 Erigeron canadensis HOM05D000726 ORTHO05D007554 9.7e-266 921.0 1258 45.6
DCAR_010826 Daucus carota HOM05D000726 ORTHO05D007554 3.1e-264 916.0 1181 47.7
Thhalv10001287m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 2.8e-257 892.9 1084 48.2
Carub.0002s1010 Capsella rubella HOM05D000726 ORTHO05D007554 4.8e-249 865.5 967 50.1
Thhalv10006613m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 6.9e-248 861.7 1104 45.8
A07p32680 Brassica napus HOM05D000726 ORTHO05D007554 6.1e-236 822.0 766 57.4
AUR62040247 Chenopodium quinoa HOM05D000726 ORTHO05D007554 1.2e-228 797.7 922 49.9
CDE04G3158 Ceratophyllum demersum HOM05D000726 ORTHO05D007554 1.5e-218 764.2 799 52.4
Zm00001eb051460 Zea mays HOM05D000726 ORTHO05D007554 5.9e-215 752.3 1107 40.9
ATR0208G028 Amborella trichopoda HOM05D000726 ORTHO05D007554 2.3e-214 750.4 812 50.4
GSVIVG01000124001 Vitis vinifera HOM05D000726 ORTHO05D007554 3.3e-197 693.3 909 47.9
unitig_0.g505 Utricularia gibba HOM05D000726 ORTHO05D007554 4.6e-191 672.9 1210 37.8
SalBow3G2688 Salvia bowleyana HOM05D000726 ORTHO05D007554 1.3e-182 644.8 766 47.7
Os03g0616500 Oryza sativa ssp. japonica HOM05D000726 ORTHO05D007554 4.4e-178 629.8 784 44.4
Sabra16G0084600 Salix brachista HOM05D000726 ORTHO05D007554 4.5e-170 603.2 343 94.2
Sabra11G0026400 Salix brachista HOM05D000726 ORTHO05D007554 1.7e-169 601.3 333 96.4
SEGI_06920 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 4.2e-168 596.7 845 41.3
Sabra11G0056500 Salix brachista HOM05D000726 ORTHO05D007554 1.6e-167 594.7 332 96.1
HPP92_014039 Vanilla planifolia HOM05D000726 ORTHO05D007554 4.0e-163 580.1 559 55.6
SMO364G0657 Selaginella moellendorffii HOM05D000726 ORTHO05D007554 2.0e-162 577.8 760 43.3
Mapoly0045s0033 Marchantia polymorpha HOM05D000726 ORTHO05D007554 9.9e-162 575.5 776 42.3
AagrBONN_evm.TU.Sc2ySwM_117.495 Anthoceros agrestis HOM05D000726 ORTHO05D007554 7.6e-154 549.3 686 45.2
HPP92_028352 Vanilla planifolia HOM05D000726 ORTHO05D007554 1.0e-142 512.3 631 45.0
CiPaw.01G005400 Carya illinoinensis HOM05D000726 ORTHO05D007554 5.5e-128 463.4 419 62.1
SEGI_38739 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 5.5e-120 436.8 545 44.4
Oeu003558.1 Olea europaea HOM05D000726 ORTHO05D007554 2.9e-97 361.3 359 57.9
Glyma.11G048432 Glycine max HOM05D000726 ORTHO05D007554 1.0e-89 336.3 236 71.6
PRCOL_00006071 Prasinoderma coloniale HOM05D000726 ORTHO05D007554 2.3e-78 298.5 501 35.3
HPP92_014040 Vanilla planifolia HOM05D000726 ORTHO05D007554 9.3e-67 260.0 582 32.3
RcHm_v2.0_Chr2g0138441 Rosa chinensis HOM05D000726 ORTHO05D007554 3.9e-65 254.6 376 43.6
Cre06.g262800 Chlamydomonas reinhardtii HOM05D000726 ORTHO05D007554 2.5e-64 251.9 487 33.5
CiPaw.01G005300 Carya illinoinensis HOM05D000726 ORTHO05D007554 5.1e-57 227.6 383 39.9
CBR_g29418 Chara braunii HOM05D000019 ORTHO05D000002 4.8e-55 221.1 347 33.7
Cpa.g.sc6.25 Carica papaya HOM05D000726 ORTHO05D007554 5.8e-45 187.6 235 48.1
Nn1g04578 Nelumbo nucifera HOM05D000726 ORTHO05D007554 7.6e-45 187.2 270 42.6
Glyma.11G048366 Glycine max HOM05D000726 ORTHO05D007554 6.0e-42 177.6 348 35.3
SEGI_24863 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 2.3e-41 175.6 283 37.8
Glyma.08G243550 Glycine max HOM05D000726 ORTHO05D025659 1.1e-40 173.3 163 53.4
Psat3g172760 Pisum sativum HOM05D000726 ORTHO05D025659 7.7e-29 134.0 119 56.3
Psat0s3193g0080 Pisum sativum HOM05D000726 ORTHO05D025659 1.0e-28 133.7 115 57.4
Psat3g174600 Pisum sativum HOM05D000726 ORTHO05D025659 3.8e-28 131.7 185 42.2
Psat3g174680 Pisum sativum HOM05D000726 ORTHO05D025659 1.8e-25 122.9 139 49.6
Lj7C94G0 Lonicera japonica HOM05D000726 ORTHO05D007554 7.9e-18 97.4 203 34.5
ATR0208G027 Amborella trichopoda HOM05D000726 ORTHO05D007554 1.5e-16 93.2 181 39.2
SEGI_23696 Sequoiadendron giganteum HOM05D000726 ORTHO05D000001 1.3e-12 80.1 131 38.9
Lsat_1_v5_gn_2_113660 Lactuca sativa HOM05D000726 ORTHO05D007554 5.2e-09 68.2 61 55.7


User provided reference genes

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