Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra07G0045500 Salix brachista HOM05D005407 ORTHO05D006544 2.7e-185 652.1 392 100.0
Potri.007G051800 Populus trichocarpa HOM05D005407 ORTHO05D006544 1.8e-149 533.1 392 83.9
Potri.005G145100 Populus trichocarpa HOM05D005407 ORTHO05D006544 1.1e-109 401.0 400 64.5
Sabra05G0114800 Salix brachista HOM05D005407 ORTHO05D006544 2.5e-82 310.1 329 63.2
Sabra05G0115900 Salix brachista HOM05D005407 ORTHO05D006544 2.5e-82 310.1 329 63.2
Manes.13G114000 Manihot esculenta HOM05D005407 ORTHO05D006544 8.3e-70 268.5 395 51.9
Cpa.g.sc6.55 Carica papaya HOM05D005407 ORTHO05D006544 1.2e-52 211.5 372 46.2
Duzib264G0474 Durio zibethinus HOM05D005407 ORTHO05D006544 2.0e-52 210.7 400 47.0
Ciclev10025829m.g Citrus clementina HOM05D005407 ORTHO05D006544 1.0e-51 208.4 398 41.2
Manes.12G112400 Manihot esculenta HOM05D005407 ORTHO05D006544 1.3e-51 208.0 369 44.7
TAR628G1677 Trochodendron aralioides HOM05D005407 ORTHO05D006544 1.7e-51 207.6 380 46.3
CiPaw.02G004700 Carya illinoinensis HOM05D005407 ORTHO05D006544 1.5e-50 204.5 396 42.4
Duzib187G0216 Durio zibethinus HOM05D005407 ORTHO05D006544 3.6e-49 199.9 405 43.7
QL06p039956 Quercus lobata HOM05D005407 ORTHO05D006544 8.0e-49 198.7 388 44.1
Gohir.A11G217700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.1e-48 198.4 361 40.2
Gohir.D11G205800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.8e-48 197.6 356 42.7
Gorai.007G220900 Gossypium raimondii HOM05D005407 ORTHO05D006544 5.2e-48 196.1 366 41.8
Dinv26896 Davidia involucrata HOM05D005407 ORTHO05D006544 1.1e-45 188.3 379 37.7
Nn5g30501 Nelumbo nucifera HOM05D005407 ORTHO05D006544 1.4e-45 188.0 380 40.0
Haze_15320 Corylus avellana HOM05D005407 ORTHO05D006544 1.3e-43 181.4 383 44.6
Lj4g0004383 Lotus japonicus HOM05D005407 ORTHO05D006544 1.3e-43 181.4 354 44.1
Thecc.01G067900 Theobroma cacao HOM05D005407 ORTHO05D006544 2.3e-43 180.6 407 37.1
GSVIVG01000158001 Vitis vinifera HOM05D005407 ORTHO05D006544 5.0e-43 179.5 383 37.1
TWI09G0600 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 4.3e-42 176.4 340 43.5
Duzib147G1232 Durio zibethinus HOM05D005407 ORTHO05D006544 2.8e-41 173.7 396 37.6
Cfa004094 Carpinus fangiana HOM05D005407 ORTHO05D006544 2.3e-40 170.6 384 41.7
Gohir.A12G074500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.2e-39 168.3 390 40.5
Gohir.A02G153500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 2.0e-39 167.5 388 36.1
TWI53G1118 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 4.4e-39 166.4 357 40.9
CiPaw.01G007800 Carya illinoinensis HOM05D005407 ORTHO05D006544 5.8e-39 166.0 384 35.2
Gohir.D12G072700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.3e-38 164.9 394 40.4
Gorai.003G028600 Gossypium raimondii HOM05D005407 ORTHO05D006544 1.3e-38 164.9 389 39.6
Gorai.008G080000 Gossypium raimondii HOM05D005407 ORTHO05D006544 2.9e-38 163.7 368 41.6
Gohir.D03G026900 Gossypium hirsutum HOM05D005407 ORTHO05D006544 3.7e-38 163.3 389 39.3
Oeu040602.1 Olea europaea HOM05D005407 ORTHO05D006544 2.7e-36 157.1 353 39.1
Glyma.05G103000 Glycine max HOM05D005407 ORTHO05D006544 1.1e-34 151.8 398 40.5
MD02G1181700 Malus domestica HOM05D005407 ORTHO05D006544 1.9e-34 151.0 383 37.9
Actinidia21238 Actinidia chinensis HOM05D005407 ORTHO05D006544 3.3e-34 150.2 375 37.6
Glyma.17G164300 Glycine max HOM05D005407 ORTHO05D006544 2.1e-33 147.5 367 40.9
MD15G1292600 Malus domestica HOM05D005407 ORTHO05D006544 2.1e-33 147.5 381 37.3
ClCG01G017290 Citrullus lanatus HOM05D005407 ORTHO05D006544 1.1e-32 145.2 368 36.7
Glyma.11G050800 Glycine max HOM05D005407 ORTHO05D006544 2.4e-32 144.1 385 38.2
TPR.G23890 Trifolium pratense HOM05D005407 ORTHO05D006544 3.1e-32 143.7 401 36.4
Nitab4.5_0003878g0070 Nicotiana tabacum HOM05D005407 ORTHO05D006544 5.8e-31 139.4 347 38.0
Nn1g04631 Nelumbo nucifera HOM05D005407 ORTHO05D006544 1.7e-30 137.9 351 35.6
Nitab4.5_0007941g0010 Nicotiana tabacum HOM05D005407 ORTHO05D006544 2.9e-30 137.1 348 37.9
MELO3C007607.2 Cucumis melo HOM05D005407 ORTHO05D006544 3.8e-30 136.7 379 35.6
Psat4g083080 Pisum sativum HOM05D005407 ORTHO05D006544 3.8e-30 136.7 391 37.9
CsaV3_6G043820 Cucumis sativus L. HOM05D005407 ORTHO05D006544 4.9e-30 136.3 361 32.1
VMungo1011G0001 Vigna mungo HOM05D005407 ORTHO05D006544 1.4e-29 134.8 376 39.1
Glyma.01G191400 Glycine max HOM05D005407 ORTHO05D006544 2.7e-28 130.6 362 37.0
Eucgr.I00726 Eucalyptus grandis HOM05D005407 ORTHO05D006544 2.3e-27 127.5 393 36.1
Aqoxy6G02765 Aquilegia oxysepala HOM05D005407 ORTHO05D006544 3.9e-27 126.7 204 46.6
CANSAT01G3084 Cannabis sativa HOM05D005407 ORTHO05D006544 1.1e-26 125.2 370 34.3
VMungo1215G1030 Vigna mungo HOM05D005407 ORTHO05D006544 1.9e-26 124.4 362 34.8
PSO675G4008 Papaver somniferum HOM05D005407 ORTHO05D006544 4.3e-26 123.2 371 41.2
PGR004G2820 Punica granatum HOM05D005407 ORTHO05D006544 7.3e-26 122.5 374 36.4
Sed0008783 Sechium edule HOM05D005407 ORTHO05D006544 7.3e-26 122.5 393 30.8
Actinidia32821 Actinidia chinensis HOM05D005407 ORTHO05D006544 9.6e-26 122.1 210 45.7
arahy.Tifrunner.gnm1.ann1.IRX7P6 Arachis hypogaea HOM05D005407 ORTHO05D006544 9.6e-26 122.1 401 34.9
FvH4_1g17130 Fragaria vesca HOM05D005407 ORTHO05D006544 1.2e-25 121.7 378 35.7
FAN23G2725 Fragaria x ananassa HOM05D005407 ORTHO05D006544 1.2e-25 121.7 376 36.2
MSTRG.2839 Avicennia marina HOM05D005407 ORTHO05D006544 2.8e-25 120.6 351 32.2
FAN19G1545 Fragaria x ananassa HOM05D005407 ORTHO05D006544 3.6e-25 120.2 378 34.9
Phvul.002G013600 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 3.6e-25 120.2 368 34.2
PSO541G0358 Papaver somniferum HOM05D005407 ORTHO05D006544 4.7e-25 119.8 367 39.8
RcHm_v2.0_Chr2g0107301 Rosa chinensis HOM05D005407 ORTHO05D006544 6.2e-25 119.4 375 37.3
FAN26G3453 Fragaria x ananassa HOM05D005407 ORTHO05D006544 8.1e-25 119.0 378 34.9
arahy.Tifrunner.gnm1.ann1.UV71K9 Arachis hypogaea HOM05D005407 ORTHO05D006544 3.1e-24 117.1 404 35.4
Dinv30062 Davidia involucrata HOM05D005407 ORTHO05D006544 9.0e-24 115.5 324 35.8
Solyc02g092720.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 9.0e-24 115.5 380 31.6
CAN.G1075.9 Capsicum annuum HOM05D005407 ORTHO05D006544 1.2e-23 115.2 349 30.9
Sopen02g037270 Solanum pennellii HOM05D005407 ORTHO05D006544 2.0e-23 114.4 347 32.0
MSTRG.23698 Avicennia marina HOM05D005407 ORTHO05D006544 5.8e-23 112.8 353 34.3
Lj2g0008966 Lotus japonicus HOM05D005407 ORTHO05D006544 7.6e-23 112.5 387 31.0
PGSC0003DMG400024943 Solanum tuberosum HOM05D005407 ORTHO05D006544 2.9e-22 110.5 346 32.1
EL10Ac6g15663 Beta vulgaris HOM05D005407 ORTHO05D006544 3.8e-22 110.2 382 30.4
Prupe.6G224800 Prunus persica HOM05D005407 ORTHO05D006544 3.8e-22 110.2 395 38.0
MSTRG.3457 Avicennia marina HOM05D005407 ORTHO05D006544 1.4e-21 108.2 353 34.3
Cc07_g06740 Coffea canephora HOM05D005407 ORTHO05D006544 1.4e-21 108.2 370 34.3
Atru.chr3.207 Acer truncatum HOM05D005407 ORTHO05D006544 9.3e-21 105.5 326 34.4
THA.LOC104827519 Tarenaya hassleriana HOM05D005407 ORTHO05D006544 2.1e-20 104.4 372 31.7
FAN28G2899 Fragaria x ananassa HOM05D005407 ORTHO05D006544 7.8e-20 102.4 377 33.4
Gohir.D10G097800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.5e-18 98.2 331 30.5
Lalb_Chr16g0389101 Lupinus albus HOM05D005407 ORTHO05D006544 1.9e-18 97.8 275 31.3
Gorai.011G107400 Gossypium raimondii HOM05D005407 ORTHO05D006544 3.3e-18 97.1 331 30.2
Phvul.003G237500 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 1.3e-17 95.1 374 36.6
Gohir.A10G090300 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.6e-17 94.7 325 31.1
Medtr4g095320 Medicago truncatula HOM05D005407 ORTHO05D006544 2.1e-17 94.4 396 31.3
AL8G43980 Arabidopsis lyrata HOM05D005407 ORTHO05D006544 2.8e-17 94.0 214 36.0
AT5G67350 Arabidopsis thaliana HOM05D005407 ORTHO05D006544 2.8e-17 94.0 214 35.5
HanXRQChr12g0373231 Helianthus annuus HOM05D005407 ORTHO05D006544 2.8e-17 94.0 350 29.7
SGA_v2.0_scaffold15G07407 Striga asiatica HOM05D005407 ORTHO05D006544 8.1e-17 92.4 380 29.5
A09p09420 Brassica napus HOM05D005407 ORTHO05D006544 9.0e-16 89.0 366 30.1
BolC7t42952H Brassica oleracea HOM05D005407 ORTHO05D006544 1.5e-15 88.2 211 36.0
Lsat_1_v5_gn_4_162000 Lactuca sativa HOM05D005407 ORTHO05D006544 1.5e-15 88.2 352 27.6
Peaxi162Scf00365g00076 Petunia axillaris HOM05D005407 ORTHO05D006544 2.0e-15 87.8 354 29.7
Sp2g29310 Schrenkiella parvula HOM05D005407 ORTHO05D006544 3.4e-15 87.0 358 27.9
DCAR_021471 Daucus carota HOM05D005407 ORTHO05D006544 9.9e-15 85.5 360 27.2
CSS0012811 Camellia sinensis var. sinensis HOM05D005407 ORTHO05D006544 2.2e-14 84.3 377 30.0
A07p16540 Brassica napus HOM05D005407 ORTHO05D006544 2.9e-14 84.0 213 34.7
BraA07t29378Z Brassica rapa HOM05D005407 ORTHO05D006544 2.9e-14 84.0 213 34.7
Peaxi162Scf00264g00321 Petunia axillaris HOM05D005407 ORTHO05D006544 3.8e-14 83.6 207 32.4
Carub.0008s2714 Capsella rubella HOM05D005407 ORTHO05D006544 4.9e-14 83.2 202 35.1
Thhalv10005384m.g Eutrema salsugineum HOM05D005407 ORTHO05D006544 4.9e-14 83.2 214 34.1
BraA09t36591Z Brassica rapa HOM05D005407 ORTHO05D006544 6.4e-14 82.8 386 29.8
SalBow1G5175 Salvia bowleyana HOM05D005407 ORTHO05D006544 1.1e-13 82.0 381 31.0
CARHR280260 Cardamine hirsuta HOM05D005407 ORTHO05D006544 1.9e-13 81.3 213 32.9
ClCG02G012410 Citrullus lanatus HOM05D005407 ORTHO05D006544 1.9e-13 81.3 204 42.6
Sed0011473 Sechium edule HOM05D005407 ORTHO05D006544 2.4e-13 80.9 208 42.3
unitig_62.g23420 Utricularia gibba HOM05D005407 ORTHO05D006544 4.2e-13 80.1 348 28.2
Aa31LG1G15900 Aethionema arabicum HOM05D005407 ORTHO05D006544 7.1e-13 79.3 320 27.5
Lsat_1_v5_gn_3_87740 Lactuca sativa HOM05D005407 ORTHO05D006544 7.1e-13 79.3 280 30.4
TAR376G1145 Trochodendron aralioides HOM05D005407 ORTHO05D006544 7.1e-13 79.3 255 37.6
Rhsim08G0096100 Rhododendron simsii HOM05D005407 ORTHO05D006544 1.6e-12 78.2 299 31.8
unitig_52.g17607 Utricularia gibba HOM05D005407 ORTHO05D006544 1.6e-12 78.2 352 29.0
C09p51650 Brassica napus HOM05D005407 ORTHO05D006544 2.1e-12 77.8 362 29.3
BolC9t58026H Brassica oleracea HOM05D005407 ORTHO05D006544 2.1e-12 77.8 362 29.3
BcaC04g19788 Brassica carinata HOM05D005407 ORTHO05D006544 2.7e-12 77.4 362 29.3
MELO3C020864.2 Cucumis melo HOM05D005407 ORTHO05D006544 3.5e-12 77.0 349 32.4
vmacro17985 Vaccinium macrocarpon HOM05D005407 ORTHO05D006544 4.6e-12 76.6 160 42.5
C09p11100 Brassica napus HOM05D005407 ORTHO05D006544 1.3e-11 75.1 212 34.0
BolC9t53999H Brassica oleracea HOM05D005407 ORTHO05D006544 1.3e-11 75.1 212 34.0
Solyc03g150114.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 2.3e-11 74.3 161 36.6
BcaB04g20064 Brassica carinata HOM05D005407 ORTHO05D006544 3.9e-11 73.6 363 28.4
BcaC04g23209 Brassica carinata HOM05D005407 ORTHO05D006544 6.7e-11 72.8 211 32.7
CsaV3_2G016540 Cucumis sativus L. HOM05D005407 ORTHO05D006544 4.3e-10 70.1 349 31.8
Migut.H00374 Erythranthe guttata HOM05D005407 ORTHO05D006544 2.8e-09 67.4 357 31.7
HPP92_007853 Vanilla planifolia HOM05D005407 ORTHO05D006544 2.8e-09 67.4 203 30.5
CDE07G1425 Ceratophyllum demersum HOM05D006600 ORTHO05D008446 3.7e-09 67.0 174 39.7
CDE04G2817 Ceratophyllum demersum HOM05D005407 ORTHO05D006544 3.1e-08 63.9 210 31.9
SGA_v2.0_scaffold143G35780 Striga asiatica HOM05D005407 ORTHO05D006544 1.2e-07 62.0 351 30.5
Oeu054177.1 Olea europaea HOM05D005407 ORTHO05D006544 2.6e-07 60.8 191 29.8
FAN17G2997 Fragaria x ananassa HOM05D003020 ORTHO05D003226 1.7e-06 58.2 240 24.2
FAN22G0428 Fragaria x ananassa HOM05D003020 ORTHO05D003226 1.7e-06 58.2 243 23.9
Nitab4.5_0005127g0050 Nicotiana tabacum HOM05D005407 ORTHO05D006544 3.8e-06 57.0 102 41.2
FAN07G1960 Fragaria x ananassa HOM05D003020 ORTHO05D003226 4.9e-06 56.6 243 23.5
FvH4_4g08220 Fragaria vesca HOM05D003020 ORTHO05D003226 8.4e-06 55.8 246 24.0


User provided reference genes

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