Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra07G0045400 Salix brachista HOM05D003561 ORTHO05D004351 1.2e-115 419.9 205 100.0
Potri.007G051500 Populus trichocarpa HOM05D003561 ORTHO05D004351 5.1e-55 218.4 109 96.3
Manes.13G115200 Manihot esculenta HOM05D003561 ORTHO05D004351 3.6e-32 142.5 108 66.7
GSVIVG01000167001 Vitis vinifera HOM05D003561 ORTHO05D004351 8.8e-31 137.9 109 61.5
CSS0044154 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 2.6e-30 136.3 109 60.6
Duzib147G0573 Durio zibethinus HOM05D003561 ORTHO05D004351 3.7e-29 132.5 107 63.6
Cfa004087 Carpinus fangiana HOM05D003561 ORTHO05D004351 2.4e-28 129.8 110 60.0
Dinv30056 Davidia involucrata HOM05D003561 ORTHO05D004351 5.3e-28 128.6 100 64.0
Lj7C86G5 Lonicera japonica HOM05D003561 ORTHO05D004351 9.1e-28 127.9 109 54.1
Actinidia12002 Actinidia chinensis HOM05D003561 ORTHO05D004351 1.2e-27 127.5 108 57.4
Atru.chr3.214 Acer truncatum HOM05D003561 ORTHO05D004351 2.7e-27 126.3 104 64.4
Atru.chr3.226 Acer truncatum HOM05D003561 ORTHO05D004351 2.7e-27 126.3 104 64.4
Thecc.01G067200 Theobroma cacao HOM05D003561 ORTHO05D004351 2.7e-27 126.3 107 58.9
CiPaw.01G008500 Carya illinoinensis HOM05D003561 ORTHO05D004351 7.7e-27 124.8 104 60.6
Gorai.003G028400 Gossypium raimondii HOM05D003561 ORTHO05D004351 7.7e-27 124.8 108 57.4
Ciclev10024935m.g Citrus clementina HOM05D003561 ORTHO05D004351 1.7e-26 123.6 108 54.6
Rhsim10G0104800 Rhododendron simsii HOM05D003561 ORTHO05D004351 2.2e-26 123.2 112 52.7
CSS0023905 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 5.0e-26 122.1 116 50.9
CSS0037584 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 5.0e-26 122.1 116 50.9
Gohir.A02G153700 Gossypium hirsutum HOM05D003561 ORTHO05D004351 6.5e-26 121.7 108 57.4
Gohir.D03G026700 Gossypium hirsutum HOM05D003561 ORTHO05D004351 1.1e-25 120.9 108 54.6
Dinv15779 Davidia involucrata HOM05D003561 ORTHO05D004351 1.5e-25 120.6 107 53.3
TAR381G0090 Trochodendron aralioides HOM05D003561 ORTHO05D004351 1.5e-25 120.6 109 55.0
Hma1.2p1_0239F.1_g099850 Hydrangea macrophylla HOM05D003561 ORTHO05D004351 9.4e-25 117.9 108 53.7
Aqoxy6G02799 Aquilegia oxysepala HOM05D003561 ORTHO05D004351 3.6e-24 115.9 109 49.5
Psat6g216560 Pisum sativum HOM05D003561 ORTHO05D004351 8.0e-24 114.8 109 45.0
MD02G1180800 Malus domestica HOM05D003561 ORTHO05D004351 1.0e-23 114.4 108 50.9
PGR102G2010 Punica granatum HOM05D003561 ORTHO05D004351 2.3e-23 113.2 124 47.6
Cfa004615 Carpinus fangiana HOM05D003561 ORTHO05D004351 5.2e-23 112.1 108 46.3
vmacro19460 Vaccinium macrocarpon HOM05D003561 ORTHO05D004351 6.8e-23 111.7 109 48.6
Actinidia27978 Actinidia chinensis HOM05D003561 ORTHO05D004351 8.8e-23 111.3 108 47.2
PSO541G3211 Papaver somniferum HOM05D003561 ORTHO05D004351 8.8e-23 111.3 102 51.0
Prupe.6G225400 Prunus persica HOM05D003561 ORTHO05D004351 1.2e-22 110.9 108 51.9
TPR.G27110 Trifolium pratense HOM05D003561 ORTHO05D004351 1.5e-22 110.5 109 44.0
CANSAT01G2799 Cannabis sativa HOM05D003561 ORTHO05D004351 2.6e-22 109.8 109 47.7
Cc07_g06660 Coffea canephora HOM05D003561 ORTHO05D004351 4.4e-22 109.0 108 50.0
PSO675G3219 Papaver somniferum HOM05D003561 ORTHO05D004351 5.7e-22 108.6 102 51.0
FvH4_1g17060 Fragaria vesca HOM05D003561 ORTHO05D004351 7.5e-22 108.2 109 50.5
Lj5A216G104 Lonicera japonica HOM05D003561 ORTHO05D004351 1.3e-21 107.5 107 48.6
FAN28G0575 Fragaria x ananassa HOM05D003561 ORTHO05D004351 1.7e-21 107.1 108 50.0
Glyma.10G259600 Glycine max HOM05D003561 ORTHO05D004351 2.2e-21 106.7 108 44.4
Rhsim10G0161700 Rhododendron simsii HOM05D003561 ORTHO05D004351 2.2e-21 106.7 111 46.8
FAN19G0232 Fragaria x ananassa HOM05D003561 ORTHO05D004351 2.8e-21 106.3 108 50.0
FAN26G2049 Fragaria x ananassa HOM05D003561 ORTHO05D004351 2.8e-21 106.3 108 50.0
Nn5g30480 Nelumbo nucifera HOM05D003561 ORTHO05D004351 3.7e-21 105.9 109 49.5
GSVIVG01037885001 Vitis vinifera HOM05D003561 ORTHO05D004351 3.7e-21 105.9 108 43.5
Medtr1g106905 Medicago truncatula HOM05D003561 ORTHO05D004351 6.3e-21 105.1 109 41.3
Ca_11052_v3 Cicer arietinum L. HOM05D003561 ORTHO05D004351 8.3e-21 104.8 108 42.6
Lalb_Chr02g0145171 Lupinus albus HOM05D003561 ORTHO05D004351 8.3e-21 104.8 108 42.6
RcHm_v2.0_Chr2g0107231 Rosa chinensis HOM05D003561 ORTHO05D004351 1.4e-20 104.0 107 49.5
TWI75G1561 Tripterygium wilfordii HOM05D003561 ORTHO05D004351 3.1e-20 102.8 106 44.3
QL11p032306 Quercus lobata HOM05D003561 ORTHO05D004351 7.0e-20 101.7 108 41.7
Eucgr.H02268 Eucalyptus grandis HOM05D003561 ORTHO05D004351 9.1e-20 101.3 108 46.3
Phvul.007G042500 Phaseolus vulgaris HOM05D003561 ORTHO05D004351 1.2e-19 100.9 108 40.7
Ciclev10027851m.g Citrus clementina HOM05D003561 ORTHO05D004351 5.9e-19 98.6 108 38.9
Lsat_1_v5_gn_7_85901 Lactuca sativa HOM05D003561 ORTHO05D004351 7.7e-19 98.2 107 44.9
Potri.001G297600 Populus trichocarpa HOM05D003561 ORTHO05D004351 1.0e-18 97.8 116 40.5
Thecc.02G112400 Theobroma cacao HOM05D003561 ORTHO05D004351 1.0e-18 97.8 110 41.8
EL10Ac6g15669 Beta vulgaris HOM05D003561 ORTHO05D004351 1.3e-18 97.4 109 45.9
Gohir.A03G184800 Gossypium hirsutum HOM05D003561 ORTHO05D004351 1.3e-18 97.4 110 39.1
Ah.03g146260 Amaranthus hybridus HOM05D003561 ORTHO05D004351 1.7e-18 97.1 109 46.8
AUR62003959 Chenopodium quinoa HOM05D003561 ORTHO05D004351 1.7e-18 97.1 111 45.0
Gorai.005G233700 Gossypium raimondii HOM05D003561 ORTHO05D004351 1.7e-18 97.1 110 39.1
Manes.10G073266 Manihot esculenta HOM05D003561 ORTHO05D004351 1.7e-18 97.1 107 43.9
arahy.Tifrunner.gnm1.ann1.Q24X8K Arachis hypogaea HOM05D003561 ORTHO05D004351 2.3e-18 96.7 107 42.1
Sabra09G0071200 Salix brachista HOM05D003561 ORTHO05D004351 2.3e-18 96.7 107 42.1
Duzib132G1062 Durio zibethinus HOM05D003561 ORTHO05D004351 2.9e-18 96.3 110 39.1
arahy.Tifrunner.gnm1.ann1.IMHW03 Arachis hypogaea HOM05D003561 ORTHO05D004351 5.0e-18 95.5 107 42.1
Lj5g0023418 Lotus japonicus HOM05D003561 ORTHO05D004351 5.0e-18 95.5 108 39.8
Potri.009G092500 Populus trichocarpa HOM05D003561 ORTHO05D004351 8.6e-18 94.7 107 41.1
ECA238G3157 Erigeron canadensis HOM05D003561 ORTHO05D004351 1.1e-17 94.4 98 45.9
RcHm_v2.0_Chr6g0254331 Rosa chinensis HOM05D003561 ORTHO05D004351 1.5e-17 94.0 108 42.6
VMungo0720G2973 Vigna mungo HOM05D003561 ORTHO05D004351 1.5e-17 94.0 108 38.9
HanXRQChr04g0128551 Helianthus annuus HOM05D003561 ORTHO05D004351 1.9e-17 93.6 107 43.0
Nitab4.5_0000284g0010 Nicotiana tabacum HOM05D003561 ORTHO05D004351 1.9e-17 93.6 110 44.5
Oeu011151.1 Olea europaea HOM05D003561 ORTHO05D004351 1.9e-17 93.6 107 40.2
Atru.chr5.2428 Acer truncatum HOM05D003561 ORTHO05D004351 2.5e-17 93.2 108 38.9
FAN15G0682 Fragaria x ananassa HOM05D003561 ORTHO05D004351 3.2e-17 92.8 108 41.7
FAN20G0240 Fragaria x ananassa HOM05D003561 ORTHO05D004351 3.2e-17 92.8 107 43.0
Eucgr.G01293 Eucalyptus grandis HOM05D003561 ORTHO05D004351 5.5e-17 92.0 106 40.6
FvH4_2g04670 Fragaria vesca HOM05D003561 ORTHO05D004351 5.5e-17 92.0 108 41.7
FAN24G1860 Fragaria x ananassa HOM05D003561 ORTHO05D004351 5.5e-17 92.0 108 41.7
MD05G1093800 Malus domestica HOM05D003561 ORTHO05D004351 7.2e-17 91.7 106 41.5
Gohir.D02G206300 Gossypium hirsutum HOM05D003561 ORTHO05D004351 1.2e-16 90.9 109 38.5
PGR042G0884 Punica granatum HOM05D003561 ORTHO05D004351 1.2e-16 90.9 108 38.0
CARHR242490 Cardamine hirsuta HOM05D003561 ORTHO05D004351 2.8e-16 89.7 108 38.9
Migut.B00411 Erythranthe guttata HOM05D003561 ORTHO05D004351 2.8e-16 89.7 107 38.3
Haze_15327 Corylus avellana HOM05D003561 ORTHO05D004351 3.6e-16 89.4 82 58.5
HanXRQChr14g0449611 Helianthus annuus HOM05D003561 ORTHO05D004351 3.6e-16 89.4 109 39.4
AT4G34280 Arabidopsis thaliana HOM05D003561 ORTHO05D004351 6.1e-16 88.6 108 36.1
CAN.G1482.2 Capsicum annuum HOM05D003561 ORTHO05D004351 6.1e-16 88.6 100 46.0
FAN27G2112 Fragaria x ananassa HOM05D003561 ORTHO05D004351 6.1e-16 88.6 108 40.7
Nitab4.5_0000604g0020 Nicotiana tabacum HOM05D003561 ORTHO05D004351 6.1e-16 88.6 108 42.6
Solyc02g064800.3 Solanum lycopersicum HOM05D003561 ORTHO05D004351 8.0e-16 88.2 100 46.0
AL7G16990 Arabidopsis lyrata HOM05D003561 ORTHO05D004351 1.0e-15 87.8 99 36.4
COL.COLO4_11519 Corchorus olitorius HOM05D003561 ORTHO05D004351 1.4e-15 87.4 86 55.8
Sopen02g014910 Solanum pennellii HOM05D003561 ORTHO05D004351 1.8e-15 87.0 100 45.0
BcaNung04991 Brassica carinata HOM05D003561 ORTHO05D004351 2.3e-15 86.7 99 33.3
THA.LOC104819541 Tarenaya hassleriana HOM05D003561 ORTHO05D004351 2.3e-15 86.7 99 39.4
C01p04490 Brassica napus HOM05D003561 ORTHO05D004351 3.0e-15 86.3 99 33.3
BolC1t00435H Brassica oleracea HOM05D003561 ORTHO05D004351 3.0e-15 86.3 99 33.3
BcaC03g17819 Brassica carinata HOM05D003561 ORTHO05D004351 8.8e-15 84.7 99 32.3
A01p04120 Brassica napus HOM05D003561 ORTHO05D004351 8.8e-15 84.7 99 33.3
C02p58430 Brassica napus HOM05D003561 ORTHO05D004351 8.8e-15 84.7 99 32.3
BraA01t00401Z Brassica rapa HOM05D003561 ORTHO05D004351 8.8e-15 84.7 99 33.3
ECA236G4994 Erigeron canadensis HOM05D003561 ORTHO05D004351 1.2e-14 84.3 107 40.2
PGSC0003DMG400025758 Solanum tuberosum HOM05D003561 ORTHO05D004351 1.2e-14 84.3 109 37.6
Carub.0007s0608 Capsella rubella HOM05D003561 ORTHO05D004351 1.5e-14 84.0 99 33.3
Sp7g32080 Schrenkiella parvula HOM05D003561 ORTHO05D004351 3.4e-14 82.8 99 33.3
BcaNung04160 Brassica carinata HOM05D003561 ORTHO05D004351 4.4e-14 82.4 99 33.3
FAN23G0469 Fragaria x ananassa HOM05D000001 ORTHO05D000003 5.7e-14 82.0 68 55.9
Nitab4.5_0010275g0030 Nicotiana tabacum HOM05D003561 ORTHO05D004351 5.7e-14 82.0 106 35.8
PGSC0003DMG400013016 Solanum tuberosum HOM05D003561 ORTHO05D004351 5.7e-14 82.0 100 43.0
AUR62027366 Chenopodium quinoa HOM05D003561 ORTHO05D004351 7.5e-14 81.6 108 35.2
SGA_v2.0_scaffold225G43001 Striga asiatica HOM05D003561 ORTHO05D004351 7.5e-14 81.6 107 34.6
Rhsim05G0089400 Rhododendron simsii HOM05D003561 ORTHO05D004351 9.8e-14 81.3 85 47.1
SalBow6G5634 Salvia bowleyana HOM05D003561 ORTHO05D004351 9.8e-14 81.3 106 34.9
MSTRG.16699 Avicennia marina HOM05D003561 ORTHO05D004351 1.3e-13 80.9 107 34.6
Cc02_g19520 Coffea canephora HOM05D003561 ORTHO05D004351 1.3e-13 80.9 107 37.4
Solyc01g107360.4 Solanum lycopersicum HOM05D003561 ORTHO05D004351 1.7e-13 80.5 108 36.1
C09p44740 Brassica napus HOM05D003561 ORTHO05D004351 2.2e-13 80.1 99 31.3
Haze_10212 Corylus avellana HOM05D003561 ORTHO05D004351 3.7e-13 79.3 85 42.4
Thhalv10024491m.g Eutrema salsugineum HOM05D003561 ORTHO05D004351 3.7e-13 79.3 100 34.0
Nitab4.5_0001480g0050 Nicotiana tabacum HOM05D003561 ORTHO05D004351 3.7e-13 79.3 114 36.0
Hund29372 Selenicereus undatus HOM05D003561 ORTHO05D004351 4.9e-13 79.0 102 40.2
Hund29375 Selenicereus undatus HOM05D003561 ORTHO05D004351 8.3e-13 78.2 102 40.2
Rhsim10G0161500 Rhododendron simsii HOM05D003561 ORTHO05D004351 1.1e-12 77.8 86 45.3
Hund13924 Selenicereus undatus HOM05D003561 ORTHO05D004351 1.1e-12 77.8 114 40.4
Sopen01g049600 Solanum pennellii HOM05D003561 ORTHO05D004351 3.1e-12 76.3 103 35.9
Cpa.g.sc6.61 Carica papaya HOM05D003561 ORTHO05D004351 4.1e-12 75.9 70 57.1
Aa31sc72G40 Aethionema arabicum HOM05D003561 ORTHO05D004351 5.9e-11 72.0 98 32.7
AUR62038271 Chenopodium quinoa HOM05D003561 ORTHO05D004351 1.7e-10 70.5 86 45.3
Pp3c22_17660 Physcomitrium patens HOM05D003561 ORTHO05D004351 3.3e-09 66.2 100 32.0
RcHm_v2.0_Chr6g0254361 Rosa chinensis HOM05D003561 ORTHO05D004351 5.6e-09 65.5 85 40.0
COL.COLO4_32560 Corchorus olitorius HOM05D003561 ORTHO05D004351 2.1e-08 63.5 85 36.5
SEGI_28319 Sequoiadendron giganteum HOM05D003561 ORTHO05D004351 2.1e-08 63.5 119 34.5
Hund06710 Selenicereus undatus HOM05D003561 ORTHO05D004351 3.6e-08 62.8 84 35.7
DCAR_001664 Daucus carota HOM05D003561 ORTHO05D004351 6.1e-08 62.0 84 38.1
SEGI_36307 Sequoiadendron giganteum HOM05D003561 ORTHO05D004351 1.4e-07 60.8 79 39.2
Ah.09g232050 Amaranthus hybridus HOM05D003561 ORTHO05D004351 3.0e-07 59.7 86 38.4
Peaxi162Scf00016g02531 Petunia axillaris HOM05D003561 ORTHO05D004351 3.0e-07 59.7 85 32.9
Pp3c18_4410 Physcomitrium patens HOM05D003561 ORTHO05D004351 2.0e-06 57.0 99 31.3
Glyma.20G131200 Glycine max HOM05D003561 ORTHO05D004351 2.6e-06 56.6 73 37.0


User provided reference genes

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