Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra07G0038500 Salix brachista HOM05D004996 ORTHO05D005844 1.2e-178 629.8 320 100.0
Potri.007G043600 Populus trichocarpa HOM05D004996 ORTHO05D005844 7.0e-160 567.4 323 90.1
Manes.13G124600 Manihot esculenta HOM05D004996 ORTHO05D005844 1.7e-126 456.4 324 73.5
TWI73G1146 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 1.8e-115 419.9 322 66.5
Cfa004020 Carpinus fangiana HOM05D004996 ORTHO05D005844 3.1e-115 419.1 319 65.8
MD15G1283600 Malus domestica HOM05D004996 ORTHO05D005844 1.3e-113 413.7 327 66.7
Prupe.7G133700 Prunus persica HOM05D004996 ORTHO05D005844 4.2e-112 408.7 326 65.6
QL06p041440 Quercus lobata HOM05D004996 ORTHO05D005844 1.3e-110 403.7 281 69.4
Duzib147G0592 Durio zibethinus HOM05D004996 ORTHO05D005844 1.3e-108 397.1 286 67.8
COL.COLO4_11407 Corchorus olitorius HOM05D004996 ORTHO05D005844 2.8e-108 396.0 267 70.8
CiPaw.02G008500 Carya illinoinensis HOM05D004996 ORTHO05D005844 4.8e-108 395.2 318 62.3
FvH4_7g06480 Fragaria vesca HOM05D004996 ORTHO05D005844 6.2e-108 394.8 320 65.0
Thecc.01G055400 Theobroma cacao HOM05D004996 ORTHO05D005844 6.2e-108 394.8 326 63.2
Haze_16999 Corylus avellana HOM05D004996 ORTHO05D005844 8.1e-108 394.4 272 68.0
VMungo0647G1648 Vigna mungo HOM05D004996 ORTHO05D005844 1.8e-107 393.3 317 63.7
GSVIVG01022135001 Vitis vinifera HOM05D004996 ORTHO05D005844 4.0e-107 392.1 268 69.8
Ciclev10026041m.g Citrus clementina HOM05D004996 ORTHO05D005844 5.3e-107 391.7 312 63.5
RcHm_v2.0_Chr1g0334851 Rosa chinensis HOM05D004996 ORTHO05D005844 6.9e-107 391.3 321 64.2
FAN10G3007 Fragaria x ananassa HOM05D004996 ORTHO05D005844 9.0e-107 391.0 319 64.9
Haze_16997 Corylus avellana HOM05D004996 ORTHO05D005844 1.5e-106 390.2 367 56.1
Lj7A69G43 Lonicera japonica HOM05D004996 ORTHO05D005844 7.6e-106 387.9 274 68.2
Medtr5g096150 Medicago truncatula HOM05D004996 ORTHO05D005844 1.1e-104 384.0 313 60.1
Phvul.008G280200 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 1.4e-104 383.6 317 62.1
Duzib187G0496 Durio zibethinus HOM05D004996 ORTHO05D005844 1.9e-104 383.3 324 61.1
Hma1.2p1_0200F.1_g085840 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.9e-104 383.3 312 64.1
Hma1.2p1_2839F.1_g329295 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.9e-104 383.3 312 64.1
FAN06G0805 Fragaria x ananassa HOM05D004996 ORTHO05D005844 1.6e-103 380.2 320 63.1
Ca_05570_v3 Cicer arietinum L. HOM05D004996 ORTHO05D005844 2.1e-103 379.8 316 58.5
Rhsim08G0100700 Rhododendron simsii HOM05D004996 ORTHO05D005844 2.1e-103 379.8 338 60.9
LjContig00272g0002438 Lotus japonicus HOM05D004996 ORTHO05D005844 6.0e-103 378.3 275 63.6
LjContig00272g0020566 Lotus japonicus HOM05D004996 ORTHO05D005844 1.0e-102 377.5 275 63.6
Glyma.14G012500 Glycine max HOM05D004996 ORTHO05D005844 1.8e-102 376.7 321 59.2
Glyma.02G301700 Glycine max HOM05D004996 ORTHO05D005844 2.3e-102 376.3 281 64.4
Psat2g006800 Pisum sativum HOM05D004996 ORTHO05D005844 3.9e-102 375.6 312 58.7
Eucgr.I00930 Eucalyptus grandis HOM05D004996 ORTHO05D005844 4.3e-101 372.1 292 63.0
LjContig00081g0020523 Lotus japonicus HOM05D004996 ORTHO05D005844 2.1e-100 369.8 278 62.9
FAN01G0777 Fragaria x ananassa HOM05D004996 ORTHO05D005844 8.2e-100 367.9 335 60.6
Gorai.007G212700 Gossypium raimondii HOM05D004996 ORTHO05D005844 8.2e-100 367.9 278 66.2
Gohir.D11G198600 Gossypium hirsutum HOM05D004996 ORTHO05D005844 1.1e-99 367.5 282 64.5
Gohir.A11G192100 Gossypium hirsutum HOM05D004996 ORTHO05D005844 1.8e-99 366.7 315 61.9
Phvul.008G280300 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 6.9e-99 364.8 321 58.9
Cc03_g11370 Coffea canephora HOM05D004996 ORTHO05D005844 2.6e-98 362.8 316 59.2
arahy.Tifrunner.gnm1.ann1.X0LXK2 Arachis hypogaea HOM05D004996 ORTHO05D005844 7.6e-98 361.3 292 59.9
Nitab4.5_0000033g0420 Nicotiana tabacum HOM05D004996 ORTHO05D005844 1.7e-97 360.1 298 59.7
Nitab4.5_0001064g0040 Nicotiana tabacum HOM05D004996 ORTHO05D005844 5.0e-97 358.6 318 57.5
MSTRG.23749 Avicennia marina HOM05D004996 ORTHO05D005844 6.5e-97 358.2 276 60.5
PGSC0003DMG400018987 Solanum tuberosum HOM05D004996 ORTHO05D005844 1.1e-96 357.5 266 64.3
Oeu004826.1 Olea europaea HOM05D004996 ORTHO05D005844 2.5e-96 356.3 295 59.3
Lsat_1_v5_gn_2_84140 Lactuca sativa HOM05D004996 ORTHO05D005844 4.2e-96 355.5 315 59.0
Solyc03g044470.4 Solanum lycopersicum HOM05D004996 ORTHO05D005844 4.2e-96 355.5 299 58.5
Actinidia16491 Actinidia chinensis HOM05D004996 ORTHO05D005844 5.5e-96 355.1 274 62.4
CAN.G11.7 Capsicum annuum HOM05D004996 ORTHO05D005844 1.6e-95 353.6 309 57.3
Migut.H00434 Erythranthe guttata HOM05D004996 ORTHO05D005844 1.6e-95 353.6 281 60.5
Cpa.g.sc55.151 Carica papaya HOM05D004996 ORTHO05D005844 2.1e-95 353.2 310 57.4
Sopen03g008630 Solanum pennellii HOM05D004996 ORTHO05D005844 2.1e-95 353.2 299 58.2
HanXRQChr14g0442821 Helianthus annuus HOM05D004996 ORTHO05D005844 2.7e-95 352.8 283 62.2
ECA238G3150 Erigeron canadensis HOM05D004996 ORTHO05D005844 3.0e-94 349.4 278 63.3
Lalb_Chr17g0348991 Lupinus albus HOM05D004996 ORTHO05D005844 3.9e-94 349.0 311 58.8
TAR376G0493 Trochodendron aralioides HOM05D004996 ORTHO05D005844 1.5e-93 347.1 317 57.7
TPR.G36603 Trifolium pratense HOM05D004996 ORTHO05D005844 3.3e-93 345.9 290 56.2
PGR004G2460 Punica granatum HOM05D004996 ORTHO05D005844 5.7e-93 345.1 273 60.8
DCAR_021441 Daucus carota HOM05D004996 ORTHO05D005844 7.4e-93 344.7 271 61.3
MELO3C020912.2 Cucumis melo HOM05D004996 ORTHO05D005844 1.3e-92 344.0 307 56.7
Nn7g36483 Nelumbo nucifera HOM05D004996 ORTHO05D005844 2.8e-92 342.8 295 59.7
Thhalv10025731m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 4.8e-92 342.0 312 56.1
Sc07g0000030 Simmondsia chinensis HOM05D004996 ORTHO05D005844 6.3e-92 341.7 285 59.3
CsaV3_2G016730 Cucumis sativus L. HOM05D004996 ORTHO05D005844 8.2e-92 341.3 306 56.2
CARHR245500 Cardamine hirsuta HOM05D004996 ORTHO05D005844 1.1e-91 340.9 311 55.9
vmacro17952 Vaccinium macrocarpon HOM05D004996 ORTHO05D005844 1.1e-91 340.9 324 57.4
Sed0024126 Sechium edule HOM05D004996 ORTHO05D005844 1.4e-91 340.5 279 58.4
C01p02010 Brassica napus HOM05D004996 ORTHO05D005844 2.0e-90 336.7 325 56.0
ClCG02G012610 Citrullus lanatus HOM05D004996 ORTHO05D005844 2.6e-90 336.3 306 54.2
Peaxi162Scf00685g00059 Petunia axillaris HOM05D004996 ORTHO05D005844 2.6e-90 336.3 283 58.7
Sp7g34760 Schrenkiella parvula HOM05D004996 ORTHO05D005844 2.6e-90 336.3 324 54.0
THA.LOC104807582 Tarenaya hassleriana HOM05D004996 ORTHO05D005844 3.4e-90 335.9 321 54.5
A01p01870 Brassica napus HOM05D004996 ORTHO05D005844 5.9e-90 335.1 312 56.4
BraA01t00176Z Brassica rapa HOM05D004996 ORTHO05D005844 1.7e-89 333.6 311 56.3
CANSAT01G2652 Cannabis sativa HOM05D004996 ORTHO05D005844 3.8e-89 332.4 286 59.1
Ah.02g120540 Amaranthus hybridus HOM05D004996 ORTHO05D005844 5.0e-89 332.0 321 55.1
Aqoxy5G01233 Aquilegia oxysepala HOM05D004996 ORTHO05D005844 5.0e-89 332.0 302 56.6
Aa31LG6G13970 Aethionema arabicum HOM05D004996 ORTHO05D005844 6.5e-89 331.6 313 54.0
SalBow6G7153 Salvia bowleyana HOM05D004996 ORTHO05D005844 1.1e-88 330.9 313 53.7
AUR62003879 Chenopodium quinoa HOM05D004996 ORTHO05D005844 1.6e-87 327.0 321 53.6
Thhalv10027845m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 4.6e-87 325.5 313 55.0
Carub.0007s0320 Capsella rubella HOM05D004996 ORTHO05D005844 7.9e-87 324.7 309 53.4
Thhalv10027846m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 7.9e-87 324.7 313 54.0
AL7G13770 Arabidopsis lyrata HOM05D004996 ORTHO05D005844 3.0e-86 322.8 325 51.7
EL10Ac6g15748 Beta vulgaris HOM05D004996 ORTHO05D005844 2.6e-85 319.7 287 55.7
CANSAT11G1602 Cannabis sativa HOM05D004996 ORTHO05D005844 2.6e-85 319.7 271 56.8
CANSAT11G2671 Cannabis sativa HOM05D004996 ORTHO05D005844 5.7e-85 318.5 271 56.5
Atru.chr3.335 Acer truncatum HOM05D004996 ORTHO05D005844 7.4e-85 318.2 277 58.8
AT4G37000 Arabidopsis thaliana HOM05D004996 ORTHO05D005844 1.7e-84 317.0 322 51.6
BolC1t00195H Brassica oleracea HOM05D004996 ORTHO05D005844 2.2e-84 316.6 346 50.3
PSO210G5017 Papaver somniferum HOM05D004996 ORTHO05D005844 1.1e-83 314.3 319 51.4
Hund13551 Selenicereus undatus HOM05D004996 ORTHO05D005844 6.9e-83 311.6 293 52.9
PSO170G3325 Papaver somniferum HOM05D004996 ORTHO05D005844 7.7e-82 308.1 282 52.5
BcaNung02518 Brassica carinata HOM05D004996 ORTHO05D005844 1.3e-81 307.4 310 50.6
QL06p041448 Quercus lobata HOM05D004996 ORTHO05D005844 2.9e-81 306.2 321 49.8
unitig_736.g22663 Utricularia gibba HOM05D004996 ORTHO05D005844 3.8e-81 305.8 298 51.7
Cfa004018 Carpinus fangiana HOM05D004996 ORTHO05D005844 1.4e-80 303.9 319 51.1
Haze_15405 Corylus avellana HOM05D004996 ORTHO05D005844 4.2e-80 302.4 323 53.3
SGA_v2.0_scaffold15G07296 Striga asiatica HOM05D004996 ORTHO05D005844 3.6e-79 299.3 276 54.3
Dinv29984 Davidia involucrata HOM05D004996 ORTHO05D005844 3.0e-78 296.2 243 63.4
CDE02G2298 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 6.3e-76 288.5 286 50.3
Hma1.2p1_0200F.1_g085860 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.8e-75 287.0 203 68.0
Hma1.2p1_2839F.1_g329298 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.8e-75 287.0 203 68.0
ClCG02G012600 Citrullus lanatus HOM05D004996 ORTHO05D005844 3.1e-75 286.2 295 48.5
CiPaw.01G018500 Carya illinoinensis HOM05D004996 ORTHO05D005844 4.1e-75 285.8 333 48.6
CSS0031276 Camellia sinensis var. sinensis HOM05D004996 ORTHO05D005844 4.5e-74 282.3 199 69.3
TPR.G36604 Trifolium pratense HOM05D004996 ORTHO05D005844 4.5e-74 282.3 204 62.3
TWI53G0428 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 7.7e-74 281.6 327 48.6
Ciclev10026248m.g Citrus clementina HOM05D004996 ORTHO05D005844 1.7e-73 280.4 268 53.0
Potri.007G043700 Populus trichocarpa HOM05D004996 ORTHO05D005844 5.0e-73 278.9 326 46.3
CDE02G3886 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 5.5e-72 275.4 269 49.4
CsaV3_2G016720 Cucumis sativus L. HOM05D004996 ORTHO05D005844 2.7e-71 273.1 308 46.8
MELO3C020913.2 Cucumis melo HOM05D004996 ORTHO05D005844 1.4e-70 270.8 309 45.0
Sed0020584 Sechium edule HOM05D004996 ORTHO05D005844 2.0e-66 256.9 288 46.5
Sabra07G0038400 Salix brachista HOM05D004996 ORTHO05D005844 3.5e-66 256.1 326 45.7
TWI09G1278 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 1.0e-65 254.6 252 50.8
Ah.06g186350 Amaranthus hybridus HOM05D004996 ORTHO05D005844 1.3e-65 254.2 264 48.9
HPP92_028287 Vanilla planifolia HOM05D004996 ORTHO05D005844 2.9e-65 253.1 309 45.0
Os10g0389200 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 6.8e-62 241.9 317 42.6
Atru.chr3.332 Acer truncatum HOM05D004996 ORTHO05D005844 9.8e-61 238.0 197 61.4
Zm00001eb027950 Zea mays HOM05D004996 ORTHO05D005844 9.8e-61 238.0 242 47.1
Potri.007G043500 Populus trichocarpa HOM05D004996 ORTHO05D005844 3.7e-60 236.1 238 49.2
ATR0009G017 Amborella trichopoda HOM05D004996 ORTHO05D005844 8.3e-60 235.0 267 46.4
Hund13537 Selenicereus undatus HOM05D004996 ORTHO05D005844 5.9e-58 228.8 303 41.6
SMO348G0076 Selaginella moellendorffii HOM05D004996 ORTHO05D005844 1.0e-54 218.0 263 42.6
AagrBONN_evm.TU.Sc2ySwM_368.2728 Anthoceros agrestis HOM05D004996 ORTHO05D005844 6.3e-52 208.8 309 38.8
HanXRQChr14g0442841 Helianthus annuus HOM05D004996 ORTHO05D005844 1.2e-50 204.5 178 54.5
Hund13538 Selenicereus undatus HOM05D004996 ORTHO05D005844 4.5e-50 202.6 305 38.7
AUR62001931 Chenopodium quinoa HOM05D004996 ORTHO05D005844 1.3e-49 201.1 174 57.5
Mapoly0002s0316 Marchantia polymorpha HOM05D004996 ORTHO05D005844 1.1e-48 198.0 297 39.4
Pp3c15_3570 Physcomitrium patens HOM05D004996 ORTHO05D005844 1.1e-48 198.0 295 37.3
AagrBONN_evm.TU.Sc2ySwM_340.386 Anthoceros agrestis HOM05D004996 ORTHO05D005844 2.5e-48 196.8 265 39.6
Mapoly0007s0155 Marchantia polymorpha HOM05D004996 ORTHO05D005844 6.1e-47 192.2 265 38.9
Os10g0389300 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 3.7e-36 156.4 208 41.3
Dinv39853 Davidia involucrata HOM05D004996 ORTHO05D005844 4.3e-32 142.9 98 68.4
Os10g0389100 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 4.3e-24 116.3 208 32.2
HPP92_019276 Vanilla planifolia HOM05D004996 ORTHO05D005844 6.2e-23 112.5 125 42.4
TPR.G22736 Trifolium pratense HOM05D004996 ORTHO05D005844 2.6e-21 107.1 101 47.5
Atru.chr3.333 Acer truncatum HOM05D004996 ORTHO05D005844 1.7e-20 104.4 93 49.5
Hma1.2p1_0200F.1_g085850 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 8.4e-20 102.1 110 57.3
Hma1.2p1_2839F.1_g329297 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 8.4e-20 102.1 110 57.3
TPR.G22585 Trifolium pratense HOM05D004996 ORTHO05D005844 6.0e-18 95.9 75 61.3
Mapoly0002s0315 Marchantia polymorpha HOM05D004996 ORTHO05D005844 5.1e-17 92.8 131 38.9
CBR_g39812 Chara braunii HOM05D004996 ORTHO05D005844 1.3e-12 78.2 263 26.6
CBR_g39811 Chara braunii HOM05D004996 ORTHO05D005844 6.4e-12 75.9 266 28.6
CBR_g39828 Chara braunii HOM05D001539 ORTHO05D008140 2.1e-10 70.9 237 25.7


User provided reference genes

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