Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra07G0038400 Salix brachista HOM05D004996 ORTHO05D005844 2.9e-182 641.7 321 100.0
Potri.007G043700 Populus trichocarpa HOM05D004996 ORTHO05D005844 5.0e-158 561.2 324 86.4
Potri.007G043500 Populus trichocarpa HOM05D004996 ORTHO05D005844 2.4e-115 419.5 241 86.7
TWI53G0428 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 1.7e-100 370.2 311 63.0
Cfa004018 Carpinus fangiana HOM05D004996 ORTHO05D005844 9.1e-99 364.4 280 68.2
Haze_15405 Corylus avellana HOM05D004996 ORTHO05D005844 4.5e-98 362.1 283 67.5
Ciclev10026248m.g Citrus clementina HOM05D004996 ORTHO05D005844 1.6e-95 353.6 280 66.8
CiPaw.01G018500 Carya illinoinensis HOM05D004996 ORTHO05D005844 7.9e-95 351.3 322 59.9
QL06p041448 Quercus lobata HOM05D004996 ORTHO05D005844 5.7e-93 345.1 283 63.6
TWI09G1278 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 6.3e-84 315.1 254 63.4
Sed0020584 Sechium edule HOM05D004996 ORTHO05D005844 7.0e-83 311.6 281 58.7
ClCG02G012600 Citrullus lanatus HOM05D004996 ORTHO05D005844 2.0e-82 310.1 306 55.2
CsaV3_2G016720 Cucumis sativus L. HOM05D004996 ORTHO05D005844 1.3e-81 307.4 271 58.7
MELO3C020913.2 Cucumis melo HOM05D004996 ORTHO05D005844 1.9e-80 303.5 271 57.9
TAR376G0493 Trochodendron aralioides HOM05D004996 ORTHO05D005844 1.7e-76 290.4 311 50.8
Cfa004020 Carpinus fangiana HOM05D004996 ORTHO05D005844 1.2e-74 284.3 315 50.8
TWI73G1146 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 1.2e-71 274.2 320 49.7
Duzib187G0496 Durio zibethinus HOM05D004996 ORTHO05D005844 3.6e-71 272.7 315 45.7
GSVIVG01022135001 Vitis vinifera HOM05D004996 ORTHO05D005844 6.1e-71 271.9 270 52.2
Prupe.7G133700 Prunus persica HOM05D004996 ORTHO05D005844 8.0e-71 271.6 292 49.7
Haze_16997 Corylus avellana HOM05D004996 ORTHO05D005844 1.8e-70 270.4 267 53.6
RcHm_v2.0_Chr1g0334851 Rosa chinensis HOM05D004996 ORTHO05D005844 1.8e-70 270.4 272 52.6
MD15G1283600 Malus domestica HOM05D004996 ORTHO05D005844 2.3e-70 270.0 272 51.5
Rhsim08G0100700 Rhododendron simsii HOM05D004996 ORTHO05D005844 4.0e-70 269.2 336 47.3
Haze_16999 Corylus avellana HOM05D004996 ORTHO05D005844 8.8e-70 268.1 267 53.6
QL06p041440 Quercus lobata HOM05D004996 ORTHO05D005844 8.8e-70 268.1 270 53.0
COL.COLO4_11407 Corchorus olitorius HOM05D004996 ORTHO05D005844 1.5e-69 267.3 272 49.3
FAN10G3007 Fragaria x ananassa HOM05D004996 ORTHO05D005844 2.0e-69 266.9 271 51.3
Lj7A69G43 Lonicera japonica HOM05D004996 ORTHO05D005844 2.0e-69 266.9 272 52.2
Sed0024126 Sechium edule HOM05D004996 ORTHO05D005844 4.4e-69 265.8 278 49.3
FvH4_7g06480 Fragaria vesca HOM05D004996 ORTHO05D005844 5.7e-69 265.4 272 51.1
FAN06G0805 Fragaria x ananassa HOM05D004996 ORTHO05D005844 1.7e-68 263.8 272 51.1
Duzib147G0592 Durio zibethinus HOM05D004996 ORTHO05D005844 2.2e-68 263.5 292 45.9
MELO3C020912.2 Cucumis melo HOM05D004996 ORTHO05D005844 3.7e-68 262.7 294 48.3
CiPaw.02G008500 Carya illinoinensis HOM05D004996 ORTHO05D005844 8.3e-68 261.5 311 47.3
Sabra07G0038500 Salix brachista HOM05D004996 ORTHO05D005844 1.4e-67 260.8 326 45.7
CsaV3_2G016730 Cucumis sativus L. HOM05D004996 ORTHO05D005844 2.4e-67 260.0 314 46.8
PGR004G2460 Punica granatum HOM05D004996 ORTHO05D005844 3.1e-67 259.6 280 49.6
Manes.13G124600 Manihot esculenta HOM05D004996 ORTHO05D005844 7.0e-67 258.5 318 48.1
LjContig00081g0020523 Lotus japonicus HOM05D004996 ORTHO05D005844 9.1e-67 258.1 275 49.5
Phvul.008G280200 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 1.2e-66 257.7 340 45.6
Thecc.01G055400 Theobroma cacao HOM05D004996 ORTHO05D005844 1.6e-66 257.3 316 44.9
ClCG02G012610 Citrullus lanatus HOM05D004996 ORTHO05D005844 2.0e-66 256.9 270 49.6
VMungo0647G1648 Vigna mungo HOM05D004996 ORTHO05D005844 2.0e-66 256.9 272 51.1
Eucgr.I00930 Eucalyptus grandis HOM05D004996 ORTHO05D005844 5.9e-66 255.4 292 46.6
Cc03_g11370 Coffea canephora HOM05D004996 ORTHO05D005844 1.0e-65 254.6 315 44.4
Potri.007G043600 Populus trichocarpa HOM05D004996 ORTHO05D005844 1.0e-65 254.6 329 45.0
vmacro17952 Vaccinium macrocarpon HOM05D004996 ORTHO05D005844 1.0e-65 254.6 269 50.2
Oeu004826.1 Olea europaea HOM05D004996 ORTHO05D005844 1.3e-65 254.2 304 45.1
HanXRQChr14g0442821 Helianthus annuus HOM05D004996 ORTHO05D005844 2.3e-65 253.4 271 52.0
Glyma.02G301700 Glycine max HOM05D004996 ORTHO05D005844 2.9e-65 253.1 318 46.9
Phvul.008G280300 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 2.9e-65 253.1 272 49.6
Lalb_Chr17g0348991 Lupinus albus HOM05D004996 ORTHO05D005844 3.8e-65 252.7 289 49.5
arahy.Tifrunner.gnm1.ann1.X0LXK2 Arachis hypogaea HOM05D004996 ORTHO05D005844 5.0e-65 252.3 269 49.4
CAN.G11.7 Capsicum annuum HOM05D004996 ORTHO05D005844 5.0e-65 252.3 312 44.9
Hma1.2p1_0200F.1_g085840 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 6.6e-65 251.9 320 45.9
Hma1.2p1_2839F.1_g329295 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 6.6e-65 251.9 320 45.9
Glyma.14G012500 Glycine max HOM05D004996 ORTHO05D005844 1.9e-64 250.4 328 45.1
LjContig00272g0020566 Lotus japonicus HOM05D004996 ORTHO05D005844 1.9e-64 250.4 272 49.3
FAN01G0777 Fragaria x ananassa HOM05D004996 ORTHO05D005844 2.5e-64 250.0 287 47.4
LjContig00272g0002438 Lotus japonicus HOM05D004996 ORTHO05D005844 2.5e-64 250.0 272 49.3
DCAR_021441 Daucus carota HOM05D004996 ORTHO05D005844 3.3e-64 249.6 272 50.0
Nn7g36483 Nelumbo nucifera HOM05D004996 ORTHO05D005844 3.3e-64 249.6 314 44.9
Nitab4.5_0001064g0040 Nicotiana tabacum HOM05D004996 ORTHO05D005844 3.3e-64 249.6 309 45.6
Aqoxy5G01233 Aquilegia oxysepala HOM05D004996 ORTHO05D005844 4.2e-64 249.2 311 42.8
Nitab4.5_0000033g0420 Nicotiana tabacum HOM05D004996 ORTHO05D005844 7.2e-64 248.4 307 45.9
PGSC0003DMG400018987 Solanum tuberosum HOM05D004996 ORTHO05D005844 7.2e-64 248.4 268 48.5
CANSAT01G2652 Cannabis sativa HOM05D004996 ORTHO05D005844 9.5e-64 248.1 282 47.9
Cpa.g.sc55.151 Carica papaya HOM05D004996 ORTHO05D005844 9.5e-64 248.1 326 44.2
Ciclev10026041m.g Citrus clementina HOM05D004996 ORTHO05D005844 9.5e-64 248.1 321 44.2
Psat2g006800 Pisum sativum HOM05D004996 ORTHO05D005844 1.6e-63 247.3 315 45.1
Sc07g0000030 Simmondsia chinensis HOM05D004996 ORTHO05D005844 2.1e-63 246.9 277 48.0
Actinidia16491 Actinidia chinensis HOM05D004996 ORTHO05D005844 2.8e-63 246.5 267 49.4
PSO210G5017 Papaver somniferum HOM05D004996 ORTHO05D005844 2.8e-63 246.5 302 46.0
MSTRG.23749 Avicennia marina HOM05D004996 ORTHO05D005844 3.6e-63 246.1 270 47.4
PSO170G3325 Papaver somniferum HOM05D004996 ORTHO05D005844 3.6e-63 246.1 303 45.5
Gohir.D11G198600 Gossypium hirsutum HOM05D004996 ORTHO05D005844 1.0e-62 244.6 274 46.4
Ca_05570_v3 Cicer arietinum L. HOM05D004996 ORTHO05D005844 1.4e-62 244.2 313 45.0
Solyc03g044470.4 Solanum lycopersicum HOM05D004996 ORTHO05D005844 1.4e-62 244.2 268 47.8
Peaxi162Scf00685g00059 Petunia axillaris HOM05D004996 ORTHO05D005844 1.8e-62 243.8 310 44.2
Migut.H00434 Erythranthe guttata HOM05D004996 ORTHO05D005844 6.8e-62 241.9 269 47.6
Sopen03g008630 Solanum pennellii HOM05D004996 ORTHO05D005844 8.9e-62 241.5 268 47.4
ECA238G3150 Erigeron canadensis HOM05D004996 ORTHO05D005844 1.2e-61 241.1 268 49.6
Medtr5g096150 Medicago truncatula HOM05D004996 ORTHO05D005844 1.5e-61 240.7 326 42.6
CANSAT11G1602 Cannabis sativa HOM05D004996 ORTHO05D005844 2.6e-61 240.0 272 46.0
THA.LOC104807582 Tarenaya hassleriana HOM05D004996 ORTHO05D005844 2.6e-61 240.0 312 43.6
Gorai.007G212700 Gossypium raimondii HOM05D004996 ORTHO05D005844 4.4e-61 239.2 267 46.4
TPR.G36603 Trifolium pratense HOM05D004996 ORTHO05D005844 4.4e-61 239.2 280 46.1
Ah.02g120540 Amaranthus hybridus HOM05D004996 ORTHO05D005844 7.5e-61 238.4 304 44.7
CANSAT11G2671 Cannabis sativa HOM05D004996 ORTHO05D005844 7.5e-61 238.4 272 45.6
Lsat_1_v5_gn_2_84140 Lactuca sativa HOM05D004996 ORTHO05D005844 7.5e-61 238.4 326 44.8
Gohir.A11G192100 Gossypium hirsutum HOM05D004996 ORTHO05D005844 1.7e-60 237.3 309 43.0
AUR62003879 Chenopodium quinoa HOM05D004996 ORTHO05D005844 4.9e-60 235.7 267 46.4
Hund13551 Selenicereus undatus HOM05D004996 ORTHO05D005844 1.4e-59 234.2 305 43.6
SalBow6G7153 Salvia bowleyana HOM05D004996 ORTHO05D005844 4.1e-59 232.6 267 47.6
CDE02G2298 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 1.0e-57 228.0 271 43.2
EL10Ac6g15748 Beta vulgaris HOM05D004996 ORTHO05D005844 8.6e-57 224.9 307 43.6
SGA_v2.0_scaffold15G07296 Striga asiatica HOM05D004996 ORTHO05D005844 1.5e-56 224.2 264 45.8
A01p01870 Brassica napus HOM05D004996 ORTHO05D005844 7.3e-56 221.9 271 43.2
BraA01t00176Z Brassica rapa HOM05D004996 ORTHO05D005844 7.3e-56 221.9 270 43.3
unitig_736.g22663 Utricularia gibba HOM05D004996 ORTHO05D005844 2.8e-55 219.9 266 44.7
C01p02010 Brassica napus HOM05D004996 ORTHO05D005844 6.1e-55 218.8 308 39.6
Thhalv10025731m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 8.0e-55 218.4 295 42.0
CARHR245500 Cardamine hirsuta HOM05D004996 ORTHO05D005844 2.6e-53 213.4 274 42.7
Thhalv10027846m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 2.6e-53 213.4 275 42.9
Sp7g34760 Schrenkiella parvula HOM05D004996 ORTHO05D005844 2.6e-53 213.4 312 39.7
CDE02G3886 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 4.4e-53 212.6 291 36.8
Carub.0007s0320 Capsella rubella HOM05D004996 ORTHO05D005844 5.8e-53 212.2 276 41.7
AT4G37000 Arabidopsis thaliana HOM05D004996 ORTHO05D005844 7.5e-53 211.8 273 42.1
Atru.chr3.335 Acer truncatum HOM05D004996 ORTHO05D005844 2.9e-52 209.9 284 44.0
Aa31LG6G13970 Aethionema arabicum HOM05D004996 ORTHO05D005844 4.9e-52 209.1 323 37.5
AL7G13770 Arabidopsis lyrata HOM05D004996 ORTHO05D005844 1.4e-51 207.6 273 41.0
Thhalv10027845m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 4.1e-51 206.1 275 41.5
BcaNung02518 Brassica carinata HOM05D004996 ORTHO05D005844 5.4e-51 205.7 246 42.7
BolC1t00195H Brassica oleracea HOM05D004996 ORTHO05D005844 1.6e-50 204.1 361 34.3
ATR0009G017 Amborella trichopoda HOM05D004996 ORTHO05D005844 2.0e-50 203.8 267 41.6
CSS0031276 Camellia sinensis var. sinensis HOM05D004996 ORTHO05D005844 2.0e-50 203.8 201 54.7
Dinv29984 Davidia involucrata HOM05D004996 ORTHO05D005844 3.0e-49 199.9 250 48.0
Hma1.2p1_0200F.1_g085860 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 3.0e-49 199.9 205 51.7
Hma1.2p1_2839F.1_g329298 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 3.0e-49 199.9 205 51.7
Os10g0389200 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 8.6e-49 198.4 261 41.4
HPP92_028287 Vanilla planifolia HOM05D004996 ORTHO05D005844 7.3e-48 195.3 271 40.2
Zm00001eb027950 Zea mays HOM05D004996 ORTHO05D005844 6.2e-47 192.2 245 43.3
TPR.G36604 Trifolium pratense HOM05D004996 ORTHO05D005844 2.3e-46 190.3 208 48.6
Hund13538 Selenicereus undatus HOM05D004996 ORTHO05D005844 3.7e-44 183.0 316 35.8
Hund13537 Selenicereus undatus HOM05D004996 ORTHO05D005844 1.6e-42 177.6 311 36.0
Pp3c15_3570 Physcomitrium patens HOM05D004996 ORTHO05D005844 1.3e-41 174.5 265 38.5
SMO348G0076 Selaginella moellendorffii HOM05D004996 ORTHO05D005844 2.3e-41 173.7 277 36.8
AagrBONN_evm.TU.Sc2ySwM_368.2728 Anthoceros agrestis HOM05D004996 ORTHO05D005844 3.9e-41 172.9 268 36.9
Mapoly0002s0316 Marchantia polymorpha HOM05D004996 ORTHO05D005844 8.6e-41 171.8 271 36.2
Ah.06g186350 Amaranthus hybridus HOM05D004996 ORTHO05D005844 1.2e-39 167.9 264 37.1
AUR62001931 Chenopodium quinoa HOM05D004996 ORTHO05D005844 2.1e-39 167.2 177 47.5
Atru.chr3.332 Acer truncatum HOM05D004996 ORTHO05D005844 9.2e-35 151.8 172 48.3
HanXRQChr14g0442841 Helianthus annuus HOM05D004996 ORTHO05D005844 3.5e-34 149.8 182 44.5
AagrBONN_evm.TU.Sc2ySwM_340.386 Anthoceros agrestis HOM05D004996 ORTHO05D005844 6.0e-34 149.1 268 31.3
Mapoly0007s0155 Marchantia polymorpha HOM05D004996 ORTHO05D005844 6.0e-34 149.1 240 35.4
Os10g0389300 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 4.9e-28 129.4 206 34.5
Dinv39853 Davidia involucrata HOM05D004996 ORTHO05D005844 8.4e-20 102.1 100 56.0
Os10g0389100 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 1.7e-17 94.4 204 30.4
HPP92_019276 Vanilla planifolia HOM05D004996 ORTHO05D005844 1.5e-16 91.3 118 39.8
Mapoly0002s0315 Marchantia polymorpha HOM05D004996 ORTHO05D005844 3.3e-16 90.1 134 37.3
CBR_g39811 Chara braunii HOM05D004996 ORTHO05D005844 7.3e-16 89.0 242 28.1
CBR_g39812 Chara braunii HOM05D004996 ORTHO05D005844 2.8e-15 87.0 226 28.8
CBR_g39828 Chara braunii HOM05D001539 ORTHO05D008140 8.1e-15 85.5 202 30.2
Atru.chr3.333 Acer truncatum HOM05D004996 ORTHO05D005844 4.6e-10 69.7 87 39.1
TPR.G22736 Trifolium pratense HOM05D004996 ORTHO05D005844 4.6e-10 69.7 104 38.5
Hma1.2p1_0200F.1_g085850 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 2.5e-08 63.9 111 36.9
Hma1.2p1_2839F.1_g329297 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 2.5e-08 63.9 111 36.9
TPR.G22585 Trifolium pratense HOM05D004996 ORTHO05D005844 3.1e-06 57.0 113 33.6


User provided reference genes

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