Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra07G0038000 Salix brachista HOM05D000135 ORTHO05D000203 5.5e-49 198.4 104 100.0
Potri.007G042900 Populus trichocarpa HOM05D000135 ORTHO05D000203 4.5e-43 178.7 104 91.3
Manes.13G127700 Manihot esculenta HOM05D000135 ORTHO05D000203 1.9e-17 93.6 92 59.8
COL.COLO4_11402 Corchorus olitorius HOM05D000135 ORTHO05D000203 4.0e-15 85.9 56 69.6
Thecc.01G054700 Theobroma cacao HOM05D000135 ORTHO05D000203 5.2e-15 85.5 106 50.9
Duzib147G1692 Durio zibethinus HOM05D000135 ORTHO05D000203 5.7e-14 82.0 72 56.9
Gohir.D03G021400 Gossypium hirsutum HOM05D000135 ORTHO05D000203 5.7e-14 82.0 55 65.5
Gorai.003G023100 Gossypium raimondii HOM05D000135 ORTHO05D000203 5.7e-14 82.0 55 65.5
Gohir.D11G198300 Gossypium hirsutum HOM05D000135 ORTHO05D000203 7.5e-14 81.6 55 67.3
Gorai.007G212400 Gossypium raimondii HOM05D000135 ORTHO05D000203 7.5e-14 81.6 55 67.3
TWI53G1405 Tripterygium wilfordii HOM05D000135 ORTHO05D000203 1.3e-13 80.9 96 50.0
Gohir.A11G191800 Gossypium hirsutum HOM05D000135 ORTHO05D000203 1.7e-13 80.5 55 65.5
QL06p041758 Quercus lobata HOM05D000135 ORTHO05D000203 2.8e-13 79.7 105 48.6
Haze_15414 Corylus avellana HOM05D000135 ORTHO05D000203 3.7e-13 79.3 101 48.5
Cfa004010 Carpinus fangiana HOM05D000135 ORTHO05D000203 8.3e-13 78.2 55 63.6
Glyma.11G056500 Glycine max HOM05D000135 ORTHO05D000203 8.3e-13 78.2 104 47.1
Phvul.002G019300 Phaseolus vulgaris HOM05D000135 ORTHO05D000203 8.3e-13 78.2 104 47.1
FAN19G0794 Fragaria x ananassa HOM05D000135 ORTHO05D000203 4.1e-12 75.9 104 43.3
Glyma.01G185600 Glycine max HOM05D000135 ORTHO05D000203 4.1e-12 75.9 104 48.1
Medtr5g017550 Medicago truncatula HOM05D000135 ORTHO05D000203 4.1e-12 75.9 104 46.2
VMungo1215G0656 Vigna mungo HOM05D000135 ORTHO05D000203 7.0e-12 75.1 103 45.6
Ciclev10029994m.g Citrus clementina HOM05D000135 ORTHO05D000203 1.6e-11 73.9 105 48.6
Ca_24776_v3 Cicer arietinum L. HOM05D000135 ORTHO05D000203 2.0e-11 73.6 105 41.9
Duzib187G0789 Durio zibethinus HOM05D000135 ORTHO05D000203 2.0e-11 73.6 99 45.5
Medtr5g017510 Medicago truncatula HOM05D000135 ORTHO05D000203 5.9e-11 72.0 105 46.7
Medtr5g017560 Medicago truncatula HOM05D000135 ORTHO05D000203 5.9e-11 72.0 105 46.7
Atru.chr3.341 Acer truncatum HOM05D000135 ORTHO05D000203 1.0e-10 71.2 107 43.0
Actinidia36498 Actinidia chinensis HOM05D000135 ORTHO05D000203 1.3e-10 70.9 104 45.2
VMungo0251G3415 Vigna mungo HOM05D000135 ORTHO05D000203 1.7e-10 70.5 104 46.2
Lj2g0000548 Lotus japonicus HOM05D000135 ORTHO05D000203 3.8e-10 69.3 103 45.6
Aqoxy5G01242 Aquilegia oxysepala HOM05D000135 ORTHO05D000203 6.6e-10 68.6 104 47.1
Haze_10074 Corylus avellana HOM05D000135 ORTHO05D000203 8.6e-10 68.2 55 63.6
FvH4_1g15930 Fragaria vesca HOM05D000135 ORTHO05D000203 8.6e-10 68.2 70 50.0
Prupe.8G123900 Prunus persica HOM05D000135 ORTHO05D000203 8.6e-10 68.2 55 65.5
Atru.chr5.2711 Acer truncatum HOM05D000135 ORTHO05D000203 1.1e-09 67.8 103 40.8
CANSAT01G1352 Cannabis sativa HOM05D000135 ORTHO05D000203 1.1e-09 67.8 104 38.5
TPR.G21277 Trifolium pratense HOM05D000135 ORTHO05D000203 1.1e-09 67.8 104 42.3
Glyma.05G085200 Glycine max HOM05D000135 ORTHO05D000203 1.5e-09 67.4 103 44.7
Phvul.003G244275 Phaseolus vulgaris HOM05D000135 ORTHO05D000203 1.5e-09 67.4 79 46.8
arahy.Tifrunner.gnm1.ann1.77Y3FG Arachis hypogaea HOM05D000135 ORTHO05D000203 1.9e-09 67.0 57 59.6
arahy.Tifrunner.gnm1.ann1.D3D30P Arachis hypogaea HOM05D000135 ORTHO05D000203 2.5e-09 66.6 57 59.6
CiPaw.05G006300 Carya illinoinensis HOM05D000135 ORTHO05D000203 2.5e-09 66.6 104 46.2
MD10G1094100 Malus domestica HOM05D000135 ORTHO05D000203 2.5e-09 66.6 55 63.6
Cfa004515 Carpinus fangiana HOM05D000135 ORTHO05D000203 3.3e-09 66.2 103 43.7
ClCG02G012820 Citrullus lanatus HOM05D000135 ORTHO05D000203 4.3e-09 65.9 69 46.4
Dinv39860 Davidia involucrata HOM05D000135 ORTHO05D000203 4.3e-09 65.9 91 49.5
Glyma.17G175400 Glycine max HOM05D000135 ORTHO05D000203 4.3e-09 65.9 104 44.2
TAR628G0143 Trochodendron aralioides HOM05D000135 ORTHO05D000203 5.6e-09 65.5 55 58.2
TAR628G0636 Trochodendron aralioides HOM05D000135 ORTHO05D000203 5.6e-09 65.5 55 58.2
arahy.Tifrunner.gnm1.ann1.JMIG5W Arachis hypogaea HOM05D000135 ORTHO05D000203 7.3e-09 65.1 55 54.5
Ca_18679_v3 Cicer arietinum L. HOM05D000135 ORTHO05D000203 7.3e-09 65.1 53 60.4
FAN26G2503 Fragaria x ananassa HOM05D000955 ORTHO05D003340 7.3e-09 65.1 70 48.6
Potri.009G102500 Populus trichocarpa HOM05D000135 ORTHO05D000203 7.3e-09 65.1 103 42.7
PGR142G2931 Punica granatum HOM05D000135 ORTHO05D000203 7.3e-09 65.1 79 48.1
PGR142G3781 Punica granatum HOM05D000135 ORTHO05D000203 7.3e-09 65.1 79 49.4
FvH4_2g06140 Fragaria vesca HOM05D000135 ORTHO05D000203 9.5e-09 64.7 103 40.8
FAN24G2553 Fragaria x ananassa HOM05D007022 ORTHO05D008868 9.5e-09 64.7 103 40.8
Aqoxy5G01243 Aquilegia oxysepala HOM05D000135 ORTHO05D000203 1.2e-08 64.3 43 74.4
FAN15G0654 Fragaria x ananassa HOM05D007022 ORTHO05D008868 1.2e-08 64.3 103 40.8
FAN20G2768 Fragaria x ananassa HOM05D007022 ORTHO05D008868 1.2e-08 64.3 103 40.8
Lj4g0025559 Lotus japonicus HOM05D000135 ORTHO05D000203 1.2e-08 64.3 45 64.4
Lalb_Chr16g0384691 Lupinus albus HOM05D000135 ORTHO05D000203 1.2e-08 64.3 47 63.8
Psat2g166920 Pisum sativum HOM05D000135 ORTHO05D000203 1.2e-08 64.3 75 48.0
Lj5P209T45 Lonicera japonica HOM05D000135 ORTHO05D000203 1.6e-08 63.9 47 70.2
RcHm_v2.0_Chr6g0257051 Rosa chinensis HOM05D000135 ORTHO05D000203 1.6e-08 63.9 55 58.2
TAR381G0503 Trochodendron aralioides HOM05D000135 ORTHO05D000203 1.6e-08 63.9 64 53.1
FAN01G2430 Fragaria x ananassa HOM05D000135 ORTHO05D000203 2.1e-08 63.5 95 42.1
FAN01G2941 Fragaria x ananassa HOM05D000135 ORTHO05D000203 2.1e-08 63.5 95 42.1
PGR042G1319 Punica granatum HOM05D000135 ORTHO05D000203 2.1e-08 63.5 64 54.7
arahy.Tifrunner.gnm1.ann1.0RG3QL Arachis hypogaea HOM05D000135 ORTHO05D000203 2.8e-08 63.2 45 66.7
arahy.Tifrunner.gnm1.ann1.WB2CJ6 Arachis hypogaea HOM05D007022 ORTHO05D008868 2.8e-08 63.2 45 66.7
CiPaw.01G018900 Carya illinoinensis HOM05D000135 ORTHO05D000203 2.8e-08 63.2 107 45.8
Lalb_Chr16g0378511 Lupinus albus HOM05D000135 ORTHO05D000203 3.6e-08 62.8 104 41.3
QL11p035985 Quercus lobata HOM05D000135 ORTHO05D000203 3.6e-08 62.8 46 63.0
CSS0005567 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 4.7e-08 62.4 46 63.0
Sc18g0004060 Simmondsia chinensis HOM05D000135 ORTHO05D000203 4.7e-08 62.4 100 38.0
FAN23G1378 Fragaria x ananassa HOM05D000135 ORTHO05D000203 8.0e-08 61.6 42 64.3
PSO170G0143 Papaver somniferum HOM05D000135 ORTHO05D000203 8.0e-08 61.6 56 58.9
PSO210G1763 Papaver somniferum HOM05D000135 ORTHO05D000203 8.0e-08 61.6 56 58.9
Psat7g125000 Pisum sativum HOM05D007022 ORTHO05D008868 8.0e-08 61.6 55 56.4
CANSAT25G3257 Cannabis sativa HOM05D000135 ORTHO05D000203 1.0e-07 61.2 103 41.7
MD02G1171100 Malus domestica HOM05D000135 ORTHO05D000203 1.0e-07 61.2 106 43.4
MD15G1282600 Malus domestica HOM05D000135 ORTHO05D000203 1.0e-07 61.2 99 42.4
Ah.11g040630 Amaranthus hybridus HOM05D000135 ORTHO05D000203 1.4e-07 60.8 38 73.7
Gorai.013G043400 Gossypium raimondii HOM05D000135 ORTHO05D000203 1.8e-07 60.5 55 52.7
MD05G1080100 Malus domestica HOM05D000135 ORTHO05D000203 1.8e-07 60.5 55 58.2
MSTRG.15389 Avicennia marina HOM05D000135 ORTHO05D000203 2.3e-07 60.1 105 39.0
Gohir.A13G040000 Gossypium hirsutum HOM05D000135 ORTHO05D000203 2.3e-07 60.1 103 38.8
Lalb_Chr09g0328311 Lupinus albus HOM05D000135 ORTHO05D000203 2.3e-07 60.1 47 59.6
Manes.10G056100 Manihot esculenta HOM05D000135 ORTHO05D000203 2.3e-07 60.1 95 44.2
MELO3C020900.2 Cucumis melo HOM05D000135 ORTHO05D000203 3.0e-07 59.7 75 45.3
Migut.B00343 Erythranthe guttata HOM05D000135 ORTHO05D000203 3.0e-07 59.7 46 60.9
CSS0001406 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 4.0e-07 59.3 45 64.4
Glyma.07G212000 Glycine max HOM05D000135 ORTHO05D000203 4.0e-07 59.3 95 44.2
Manes.07G082600 Manihot esculenta HOM05D000135 ORTHO05D000203 4.0e-07 59.3 96 42.7
SalBow5G1733 Salvia bowleyana HOM05D000135 ORTHO05D000203 4.0e-07 59.3 100 42.0
SalBow5G5503 Salvia bowleyana HOM05D000135 ORTHO05D000203 4.0e-07 59.3 100 42.0
Glyma.02G133000 Glycine max HOM05D000135 ORTHO05D000203 5.2e-07 58.9 48 62.5
HanXRQChr14g0442861 Helianthus annuus HOM05D000135 ORTHO05D000203 5.2e-07 58.9 47 59.6
Medtr5g017540 Medicago truncatula HOM05D000135 ORTHO05D000203 5.2e-07 58.9 52 55.8
Sed0008130 Sechium edule HOM05D000135 ORTHO05D000203 5.2e-07 58.9 76 46.1
TWI79G0422 Tripterygium wilfordii HOM05D000135 ORTHO05D000203 5.2e-07 58.9 96 42.7
VMungo0251G3651 Vigna mungo HOM05D000135 ORTHO05D000203 5.2e-07 58.9 95 44.2
Ah.02g124280 Amaranthus hybridus HOM05D000135 ORTHO05D000203 6.8e-07 58.5 93 39.8
ECA234G2126 Erigeron canadensis HOM05D000135 ORTHO05D000203 6.8e-07 58.5 46 63.0
Peaxi162Scf00152g00004 Petunia axillaris HOM05D000135 ORTHO05D000203 6.8e-07 58.5 46 60.9
Phvul.003G292700 Phaseolus vulgaris HOM05D000135 ORTHO05D000203 6.8e-07 58.5 48 64.6
CAN.G165.18 Capsicum annuum HOM05D000135 ORTHO05D000203 8.9e-07 58.2 38 65.8
Ciclev10029360m.g Citrus clementina HOM05D000135 ORTHO05D000203 8.9e-07 58.2 103 40.8
Cc02_g18730 Coffea canephora HOM05D000135 ORTHO05D000203 8.9e-07 58.2 45 60.0
COL.COLO4_32661 Corchorus olitorius HOM05D000135 ORTHO05D000203 8.9e-07 58.2 95 42.1
CsaV3_2G016890 Cucumis sativus L. HOM05D000135 ORTHO05D000203 8.9e-07 58.2 75 46.7
HanXRQChr16g0501291 Helianthus annuus HOM05D000135 ORTHO05D000203 8.9e-07 58.2 46 60.9
Lsat_1_v5_gn_5_112780 Lactuca sativa HOM05D000135 ORTHO05D000203 8.9e-07 58.2 46 60.9
Nitab4.5_0000728g0020 Nicotiana tabacum HOM05D000135 ORTHO05D000203 8.9e-07 58.2 39 64.1
TPR.G28489 Trifolium pratense HOM05D000135 ORTHO05D000203 8.9e-07 58.2 95 41.1
MSTRG.20153 Avicennia marina HOM05D000135 ORTHO05D000203 1.2e-06 57.8 47 61.7
CSS0017640 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 1.5e-06 57.4 45 62.2
Hma1.2p1_0370F.1_g137840 Hydrangea macrophylla HOM05D000135 ORTHO05D000203 1.5e-06 57.4 95 42.1
Sopen01g050420 Solanum pennellii HOM05D000135 ORTHO05D000203 1.5e-06 57.4 46 56.5
Nitab4.5_0000292g0030 Nicotiana tabacum HOM05D000135 ORTHO05D000203 2.0e-06 57.0 49 57.1
Peaxi162Scf00917g00042 Petunia axillaris HOM05D000135 ORTHO05D000203 2.0e-06 57.0 37 67.6
Sopen02g015130 Solanum pennellii HOM05D000135 ORTHO05D000203 2.0e-06 57.0 38 65.8
Lsat_1_v5_gn_2_84220 Lactuca sativa HOM05D000135 ORTHO05D000203 2.6e-06 56.6 47 59.6
Gohir.D13G038700 Gossypium hirsutum HOM05D000135 ORTHO05D000203 3.4e-06 56.2 103 36.9
Medtr4g086260 Medicago truncatula HOM05D000135 ORTHO05D000203 3.4e-06 56.2 93 41.9
Nitab4.5_0001824g0030 Nicotiana tabacum HOM05D000135 ORTHO05D000203 3.4e-06 56.2 49 57.1
Solyc01g108190.3 Solanum lycopersicum HOM05D000135 ORTHO05D000203 3.4e-06 56.2 94 40.4
Actinidia27955 Actinidia chinensis HOM05D000135 ORTHO05D000203 4.4e-06 55.8 45 60.0
Hma1.2p1_0461F.1_g157890 Hydrangea macrophylla HOM05D000135 ORTHO05D000203 4.4e-06 55.8 46 60.9
Atru.chr5.2710 Acer truncatum HOM05D000135 ORTHO05D000203 7.5e-06 55.1 103 38.8
AL3G47450 Arabidopsis lyrata HOM05D000135 ORTHO05D000203 7.5e-06 55.1 95 43.2
CAN.G1041.20 Capsicum annuum HOM05D000135 ORTHO05D000203 7.5e-06 55.1 46 54.3
AUR62013838 Chenopodium quinoa HOM05D000135 ORTHO05D000203 7.5e-06 55.1 46 56.5
Dinv42154 Davidia involucrata HOM05D007022 ORTHO05D008868 7.5e-06 55.1 37 70.3
ECA238G2850 Erigeron canadensis HOM05D000135 ORTHO05D000203 7.5e-06 55.1 104 35.6
BcaC04g23042 Brassica carinata HOM05D000135 ORTHO05D000203 9.8e-06 54.7 91 40.7
C09p12790 Brassica napus HOM05D000135 ORTHO05D000203 9.8e-06 54.7 91 40.7
Eucgr.I00935 Eucalyptus grandis HOM05D000135 ORTHO05D000203 9.8e-06 54.7 47 48.9
Solyc02g065000.1 Solanum lycopersicum HOM05D000135 ORTHO05D000203 9.8e-06 54.7 61 47.5
PGSC0003DMG400039532 Solanum tuberosum HOM05D000135 ORTHO05D000203 9.8e-06 54.7 38 63.2
Thecc.02G100300 Theobroma cacao HOM05D000135 ORTHO05D000203 9.8e-06 54.7 95 40.0


User provided reference genes

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