Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra07G0036900 Salix brachista HOM05D006144 ORTHO05D006357 0.0e+00 2498.4 1259 100.0
Potri.007G041300 Populus trichocarpa HOM05D006144 ORTHO05D006357 0.0e+00 2030.4 1301 81.8
Potri.005G136600 Populus trichocarpa HOM05D006144 ORTHO05D006357 0.0e+00 1832.0 1300 75.0
Atru.chr3.396 Acer truncatum HOM05D006144 ORTHO05D006357 0.0e+00 1376.7 1291 58.7
Manes.12G100500 Manihot esculenta HOM05D006144 ORTHO05D006357 0.0e+00 1345.5 1279 58.6
Duzib147G1467 Durio zibethinus HOM05D006144 ORTHO05D006357 0.0e+00 1314.7 1293 56.1
Thecc.01G052700 Theobroma cacao HOM05D006144 ORTHO05D006357 0.0e+00 1302.7 1289 55.6
COL.COLO4_22183 Corchorus olitorius HOM05D006144 ORTHO05D006357 0.0e+00 1288.5 1269 56.6
Haze_15426 Corylus avellana HOM05D006144 ORTHO05D006357 0.0e+00 1285.0 1247 57.3
Cfa003998 Carpinus fangiana HOM05D006144 ORTHO05D006357 0.0e+00 1283.9 1264 56.6
QL06p042250 Quercus lobata HOM05D006144 ORTHO05D006357 0.0e+00 1282.3 1306 55.6
Ciclev10024721m.g Citrus clementina HOM05D006144 ORTHO05D006357 0.0e+00 1266.9 1266 55.4
Gohir.A11G046100 Gossypium hirsutum HOM05D006144 ORTHO05D006357 0.0e+00 1265.8 1293 55.0
Gorai.007G053500 Gossypium raimondii HOM05D006144 ORTHO05D006357 0.0e+00 1259.2 1293 54.7
Gohir.D11G049700 Gossypium hirsutum HOM05D006144 ORTHO05D006357 0.0e+00 1257.3 1293 54.4
CiPaw.01G021400 Carya illinoinensis HOM05D006144 ORTHO05D006357 0.0e+00 1240.3 1301 53.6
CSS0009151 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1212.6 1275 54.9
CSS0011451 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1207.2 1272 54.4
MD02G1169100 Malus domestica HOM05D006144 ORTHO05D006357 0.0e+00 1204.1 1292 52.9
MD15G1281500 Malus domestica HOM05D006144 ORTHO05D006357 0.0e+00 1196.8 1265 54.5
Prupe.7G136200 Prunus persica HOM05D006144 ORTHO05D006357 0.0e+00 1192.9 1249 54.3
TWI09G0039 Tripterygium wilfordii HOM05D006144 ORTHO05D006357 0.0e+00 1174.1 1263 52.1
Actinidia12060 Actinidia chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1161.7 1268 52.3
Actinidia36503 Actinidia chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1149.4 1268 52.0
Rhsim10G0119800 Rhododendron simsii HOM05D006144 ORTHO05D006357 0.0e+00 1138.3 1196 53.0
CANSAT01G0270 Cannabis sativa HOM05D006144 ORTHO05D006357 0.0e+00 1117.8 1260 50.2
Dinv29969 Davidia involucrata HOM05D006144 ORTHO05D006357 0.0e+00 1111.3 1147 54.3
RcHm_v2.0_Chr2g0105021 Rosa chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1094.3 1258 51.1
CSS0044544 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1088.9 1211 53.2
FAN26G0177 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 1084.3 1291 50.0
vmacro05326 Vaccinium macrocarpon HOM05D006144 ORTHO05D006357 0.0e+00 1084.3 1386 46.2
FAN28G0789 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 1077.4 1290 49.9
FAN23G0857 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 1076.2 1285 49.6
FvH4_1g15710 Fragaria vesca HOM05D006144 ORTHO05D006357 0.0e+00 1075.8 1292 49.8
FAN19G3143 Fragaria x ananassa HOM05D006144 ORTHO05D006357 2.9e-310 1068.9 1292 49.7
Nn5g30196 Nelumbo nucifera HOM05D006144 ORTHO05D006357 8.0e-300 1034.2 1274 47.9
Nn1g05861 Nelumbo nucifera HOM05D006144 ORTHO05D006357 3.4e-298 1028.9 1282 47.7
Dinv39873 Davidia involucrata HOM05D006144 ORTHO05D006357 3.7e-297 1025.4 1265 48.9
Hma1.2p1_0200F.1_g086100 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 5.5e-293 1011.5 1277 48.0
Cc07_g05860 Coffea canephora HOM05D006144 ORTHO05D006357 9.4e-293 1010.7 1220 47.9
CsaV3_6G043130 Cucumis sativus L. HOM05D006144 ORTHO05D006357 2.2e-289 999.6 1223 48.1
ClCG01G016710 Citrullus lanatus HOM05D006144 ORTHO05D006357 1.4e-283 980.3 1222 48.0
Solyc03g044620.4 Solanum lycopersicum HOM05D006144 ORTHO05D006357 4.0e-283 978.8 1268 45.3
Lalb_Chr16g0388301 Lupinus albus HOM05D006144 ORTHO05D006357 1.1e-280 970.7 1237 47.6
Sed0018548 Sechium edule HOM05D006144 ORTHO05D006357 1.1e-280 970.7 1222 48.1
Oeu003786.1 Olea europaea HOM05D006144 ORTHO05D006357 2.4e-280 969.5 1203 46.5
Eucgr.H01999 Eucalyptus grandis HOM05D006144 ORTHO05D006357 7.0e-280 968.0 1219 47.2
Glyma.11G057500 Glycine max HOM05D006144 ORTHO05D006357 1.6e-279 966.8 1205 47.3
Glyma.01G184700 Glycine max HOM05D006144 ORTHO05D006357 2.7e-279 966.1 1188 47.5
Phvul.002G020300 Phaseolus vulgaris HOM05D006144 ORTHO05D006357 2.7e-279 966.1 1279 45.9
arahy.Tifrunner.gnm1.ann1.AH11HU Arachis hypogaea HOM05D006144 ORTHO05D006357 1.7e-278 963.4 1246 47.3
arahy.Tifrunner.gnm1.ann1.IY5EPV Arachis hypogaea HOM05D006144 ORTHO05D006357 8.6e-278 961.1 1246 47.4
MELO3C007550.2 Cucumis melo HOM05D006144 ORTHO05D006357 7.3e-277 958.0 1154 48.9
Nitab4.5_0000382g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 1.2e-274 950.7 1304 42.9
Sopen03g008900 Solanum pennellii HOM05D006144 ORTHO05D006357 1.5e-274 950.3 1266 44.1
CAN.G11.1 Capsicum annuum HOM05D006144 ORTHO05D006357 4.4e-274 948.7 1303 42.9
Nitab4.5_0001684g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 7.5e-274 948.0 1304 42.9
Lj2g0024358 Lotus japonicus HOM05D006144 ORTHO05D006357 6.4e-273 944.9 1226 47.0
VMungo1215G0092 Vigna mungo HOM05D006144 ORTHO05D006357 1.1e-272 944.1 1278 45.4
PGSC0003DMG400019754 Solanum tuberosum HOM05D006144 ORTHO05D006357 2.4e-272 943.0 1298 42.8
Oeu049306.1 Olea europaea HOM05D006144 ORTHO05D006357 6.0e-271 938.3 1213 45.8
Aqoxy6G01406 Aquilegia oxysepala HOM05D006144 ORTHO05D006357 7.8e-271 937.9 1297 43.3
Ca_24781_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 3.9e-270 935.6 1221 46.3
Peaxi162Scf00183g00711 Petunia axillaris HOM05D006144 ORTHO05D006357 6.2e-268 928.3 1308 42.4
Lalb_Chr09g0333701 Lupinus albus HOM05D006144 ORTHO05D006357 1.2e-266 924.1 1128 48.2
TPR.G31101 Trifolium pratense HOM05D006144 ORTHO05D006357 1.2e-263 914.1 1264 44.3
Psat0s3889g0080 Pisum sativum HOM05D006144 ORTHO05D006357 3.6e-260 902.5 1176 46.3
DCAR_025720 Daucus carota HOM05D006144 ORTHO05D006357 6.2e-260 901.7 1218 45.1
PGR102G0121 Punica granatum HOM05D006144 ORTHO05D006357 1.6e-252 877.1 1211 45.0
THA.LOC104826201 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 8.9e-251 871.3 1079 47.3
Migut.H00451 Erythranthe guttata HOM05D006144 ORTHO05D006357 2.7e-247 859.8 1255 41.6
MSTRG.2895 Avicennia marina HOM05D006144 ORTHO05D006357 1.1e-243 847.8 1297 40.5
MBI06_g08189_MAGBIO Magnolia biondii HOM05D006144 ORTHO05D006357 4.9e-241 839.0 1265 43.9
Hund13563 Selenicereus undatus HOM05D006144 ORTHO05D006357 5.8e-226 788.9 1193 41.9
Oeu004869.1 Olea europaea HOM05D006144 ORTHO05D006357 1.3e-220 771.2 1292 39.2
EL10Ac6g15152 Beta vulgaris HOM05D006144 ORTHO05D006357 4.5e-218 762.7 1128 42.4
SGA_v2.0_scaffold204G41590 Striga asiatica HOM05D006144 ORTHO05D006357 9.1e-211 738.4 1095 41.8
THA.LOC104804508 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 1.4e-208 731.1 869 48.8
ATR0104G015 Amborella trichopoda HOM05D006144 ORTHO05D006357 1.5e-202 711.1 1204 40.7
Sc03g0001430 Simmondsia chinensis HOM05D006144 ORTHO05D006357 2.0e-202 710.7 1180 38.6
HanXRQChr14g0430551 Helianthus annuus HOM05D006144 ORTHO05D006357 3.8e-201 706.4 1079 40.5
ECA232G0891 Erigeron canadensis HOM05D006144 ORTHO05D006357 8.5e-193 678.7 1071 40.1
AUR62001952 Chenopodium quinoa HOM05D006144 ORTHO05D006357 2.0e-189 667.5 1068 41.1
AUR62003855 Chenopodium quinoa HOM05D006144 ORTHO05D006357 4.4e-189 666.4 1075 41.0
HPP92_004081 Vanilla planifolia HOM05D006144 ORTHO05D006357 2.4e-187 660.6 1292 36.3
TAR381G1042 Trochodendron aralioides HOM05D006144 ORTHO05D006357 1.5e-184 651.4 621 58.5
GSVIVG01002633001 Vitis vinifera HOM05D006144 ORTHO05D006357 1.6e-183 647.9 664 57.4
Ah.03g144510 Amaranthus hybridus HOM05D006144 ORTHO05D006357 3.6e-183 646.7 1070 39.3
Lsat_1_v5_gn_4_167780 Lactuca sativa HOM05D006144 ORTHO05D006357 3.5e-178 630.2 1063 38.6
CDE03G0440 Ceratophyllum demersum HOM05D006144 ORTHO05D006357 3.7e-172 610.1 1206 36.1
Os03g0186500 Oryza sativa ssp. japonica HOM05D006144 ORTHO05D006357 1.1e-171 608.6 1047 37.6
Cpa.g.sc55.178 Carica papaya HOM05D006144 ORTHO05D006357 2.8e-167 594.0 589 54.7
Lj4A140T30 Lonicera japonica HOM05D006144 ORTHO05D006357 6.1e-167 592.8 601 52.6
Lj4C140T7 Lonicera japonica HOM05D006144 ORTHO05D006357 8.3e-164 582.4 598 56.2
Zm00001eb006470 Zea mays HOM05D006144 ORTHO05D006357 2.0e-162 577.8 1163 35.8
Cpa.g.sc55.182 Carica papaya HOM05D006144 ORTHO05D006357 8.3e-156 555.8 667 49.9
TAR381G0606 Trochodendron aralioides HOM05D006144 ORTHO05D006357 1.2e-151 542.0 517 55.1
PSO675G0817 Papaver somniferum HOM05D006144 ORTHO05D006357 1.7e-129 468.4 662 43.4
Ca_22186_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 9.6e-128 462.6 710 43.0
Psat4g089200 Pisum sativum HOM05D006144 ORTHO05D006357 6.9e-118 429.9 752 40.2
HPP92_004109 Vanilla planifolia HOM05D006144 ORTHO05D006357 2.3e-113 414.8 753 35.6
PSO541G4136 Papaver somniferum HOM05D006144 ORTHO05D006357 2.8e-111 407.9 700 39.4
TPR.G640 Trifolium pratense HOM05D006144 ORTHO05D006357 1.4e-99 369.0 370 54.1
Mapoly0063s0038 Marchantia polymorpha HOM05D006144 ORTHO05D006357 1.9e-96 358.6 828 32.2
MSTRG.23764 Avicennia marina HOM05D006144 ORTHO05D006357 2.2e-92 345.1 819 33.9
unitig_736.g22372 Utricularia gibba HOM05D006144 ORTHO05D006357 2.8e-87 328.2 582 38.1
Mapoly0063s0034 Marchantia polymorpha HOM05D006144 ORTHO05D006357 2.0e-85 322.0 909 29.9
Hma1.2p1_1415F.1_g282000 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 7.4e-80 303.5 629 36.4
SEGI_17223 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 1.4e-73 282.7 333 46.2
SEGI_14166 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 2.3e-73 282.0 576 33.5
SMO301G0037 Selaginella moellendorffii HOM05D006144 ORTHO05D006357 1.5e-64 252.7 947 26.5
Sabra05G0109200 Salix brachista HOM05D006144 ORTHO05D006357 4.9e-47 194.5 191 62.3
AUR62039591 Chenopodium quinoa HOM05D006144 ORTHO05D006357 2.0e-45 189.1 292 39.0
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 6.8e-41 174.1 279 38.7
unitig_736.g22373 Utricularia gibba HOM05D006144 ORTHO05D006357 7.5e-40 170.6 297 35.0
Aa31LG1G15380 Aethionema arabicum HOM05D012861 ORTHO05D006357 1.9e-35 156.0 369 35.8
AT5G66820 Arabidopsis thaliana HOM05D012861 ORTHO05D006357 6.2e-34 151.0 336 36.9
AL8G44580 Arabidopsis lyrata HOM05D012861 ORTHO05D006357 3.0e-28 132.1 349 33.8
Sabra05G0109100 Salix brachista HOM05D006144 ORTHO05D006357 4.7e-26 124.8 173 45.7
Pp3c4_25960 Physcomitrium patens HOM05D006144 ORTHO05D006357 6.2e-26 124.4 440 25.5
Sp2g29830 Schrenkiella parvula HOM05D012861 ORTHO05D006357 3.4e-24 118.6 266 35.7
CARHR280840 Cardamine hirsuta HOM05D012861 ORTHO05D006357 1.0e-20 107.1 260 33.1
Thhalv10004001m.g Eutrema salsugineum HOM05D012861 ORTHO05D006357 1.3e-20 106.7 255 35.7
Carub.0008s2766 Capsella rubella HOM05D012861 ORTHO05D006357 5.1e-20 104.8 283 35.0
CBR_g31222 Chara braunii HOM05D006144 ORTHO05D006357 6.6e-20 104.4 138 38.4
unitig_736.g22374 Utricularia gibba HOM05D006144 ORTHO05D006357 8.7e-20 104.0 236 31.4
BcaC06g34756 Brassica carinata HOM05D012861 ORTHO05D006357 1.5e-19 103.2 344 30.5
BolC7t43021H Brassica oleracea HOM05D012861 ORTHO05D006357 4.3e-19 101.7 344 30.5
C07p24920 Brassica napus HOM05D012861 ORTHO05D006357 1.4e-17 96.7 346 30.9
BcaB02g09983 Brassica carinata HOM05D012861 ORTHO05D006357 4.0e-17 95.1 212 37.3
A07p17060 Brassica napus HOM05D012861 ORTHO05D006357 4.4e-16 91.7 321 30.2
BraA07t29433Z Brassica rapa HOM05D012861 ORTHO05D006357 4.4e-16 91.7 321 30.2
MCO09G582 Micromonas commoda HOM05D006144 ORTHO05D006357 5.1e-12 78.2 323 23.8
TPR.G19009 Trifolium pratense HOM05D006144 ORTHO05D006357 3.6e-10 72.0 100 42.0
AagrBONN_evm.TU.Sc2ySwM_228.442 Anthoceros agrestis HOM05D006144 ORTHO05D006357 6.9e-09 67.8 456 21.3
SEGI_01818 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 9.9e-08 63.9 93 40.9
GSVIVG01002722001 Vitis vinifera HOM05D006144 ORTHO05D006357 1.9e-06 59.7 55 49.1


User provided reference genes

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