Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra07G0036600 Salix brachista HOM05D005038 ORTHO05D006055 5.0e-149 531.2 286 100.0
Potri.007G040900 Populus trichocarpa HOM05D005038 ORTHO05D006055 7.5e-121 437.6 281 86.1
Potri.005G136200 Populus trichocarpa HOM05D005038 ORTHO05D006055 1.7e-112 409.8 282 78.4
Sabra05G0108900 Salix brachista HOM05D005038 ORTHO05D006055 2.7e-110 402.5 283 77.7
Duzib264G0221 Durio zibethinus HOM05D005038 ORTHO05D006055 3.3e-108 395.6 276 77.5
Duzib147G1247 Durio zibethinus HOM05D005038 ORTHO05D006055 7.3e-108 394.4 276 77.9
Gohir.A11G190200 Gossypium hirsutum HOM05D005038 ORTHO05D006055 4.0e-106 388.7 279 76.3
Gohir.D11G196900 Gossypium hirsutum HOM05D005038 ORTHO05D006055 3.4e-105 385.6 279 75.6
COL.COLO4_11379 Corchorus olitorius HOM05D005038 ORTHO05D006055 5.8e-105 384.8 276 79.7
Gorai.007G210800 Gossypium raimondii HOM05D005038 ORTHO05D006055 7.5e-105 384.4 279 75.6
Manes.13G126100 Manihot esculenta HOM05D005038 ORTHO05D006055 1.7e-104 383.3 278 74.1
PGR102G3322 Punica granatum HOM05D005038 ORTHO05D006055 1.7e-104 383.3 283 73.5
Atru.chr3.399 Acer truncatum HOM05D005038 ORTHO05D006055 3.7e-104 382.1 282 74.1
Haze_15429 Corylus avellana HOM05D005038 ORTHO05D006055 6.4e-104 381.3 278 74.1
Thecc.01G052200 Theobroma cacao HOM05D005038 ORTHO05D006055 6.4e-104 381.3 276 75.7
TWI09G0447 Tripterygium wilfordii HOM05D005038 ORTHO05D006055 2.1e-102 376.3 280 71.8
CiPaw.01G021700 Carya illinoinensis HOM05D005038 ORTHO05D006055 1.3e-101 373.6 286 71.7
QL06p042351 Quercus lobata HOM05D005038 ORTHO05D006055 1.3e-101 373.6 279 72.8
Ciclev10026264m.g Citrus clementina HOM05D005038 ORTHO05D006055 3.0e-101 372.5 286 73.4
Cpa.g.sc6.381 Carica papaya HOM05D005038 ORTHO05D006055 1.1e-100 370.5 284 71.8
ClCG01G016690 Citrullus lanatus HOM05D005038 ORTHO05D006055 1.1e-100 370.5 283 74.2
MD02G1168700 Malus domestica HOM05D005038 ORTHO05D006055 1.1e-100 370.5 277 72.2
CsaV3_6G043110 Cucumis sativus L. HOM05D005038 ORTHO05D006055 1.5e-100 370.2 284 74.3
MELO3C007547.2 Cucumis melo HOM05D005038 ORTHO05D006055 2.5e-100 369.4 284 74.3
CSS0005034 Camellia sinensis var. sinensis HOM05D005038 ORTHO05D006055 3.3e-100 369.0 286 74.8
TAR628G1256 Trochodendron aralioides HOM05D005038 ORTHO05D006055 9.5e-100 367.5 277 71.5
VMungo0251G1314 Vigna mungo HOM05D005038 ORTHO05D006055 8.1e-99 364.4 273 72.5
RcHm_v2.0_Chr2g0104991 Rosa chinensis HOM05D005038 ORTHO05D006055 1.1e-98 364.0 284 70.4
Nitab4.5_0000310g0200 Nicotiana tabacum HOM05D005038 ORTHO05D006055 1.4e-98 363.6 277 70.8
Glyma.05G090600 Glycine max HOM05D005038 ORTHO05D006055 1.8e-98 363.2 278 74.8
Glyma.17G176200 Glycine max HOM05D005038 ORTHO05D006055 1.8e-98 363.2 274 71.5
Gohir.A10G092400 Gossypium hirsutum HOM05D005038 ORTHO05D006055 2.3e-98 362.8 278 71.6
Gorai.011G105100 Gossypium raimondii HOM05D005038 ORTHO05D006055 3.1e-98 362.5 278 71.6
CSS0034792 Camellia sinensis var. sinensis HOM05D005038 ORTHO05D006055 4.0e-98 362.1 279 72.8
Nn5g30191 Nelumbo nucifera HOM05D005038 ORTHO05D006055 4.0e-98 362.1 278 70.5
Sopen02g015220 Solanum pennellii HOM05D005038 ORTHO05D006055 4.0e-98 362.1 277 71.1
CiPaw.02G009600 Carya illinoinensis HOM05D005038 ORTHO05D006055 6.8e-98 361.3 284 70.1
CANSAT01G0585 Cannabis sativa HOM05D005038 ORTHO05D006055 1.2e-97 360.5 283 68.2
CAN.G165.30 Capsicum annuum HOM05D005038 ORTHO05D006055 1.2e-97 360.5 277 69.7
Hma1.2p1_0047F.1_g027670 Hydrangea macrophylla HOM05D005038 ORTHO05D006055 1.2e-97 360.5 279 70.3
FAN19G2696 Fragaria x ananassa HOM05D005038 ORTHO05D006055 1.5e-97 360.1 278 69.8
PGSC0003DMG400000767 Solanum tuberosum HOM05D005038 ORTHO05D006055 1.5e-97 360.1 275 70.5
FvH4_1g15680 Fragaria vesca HOM05D005038 ORTHO05D006055 2.6e-97 359.4 278 70.1
Solyc02g065060.3 Solanum lycopersicum HOM05D005038 ORTHO05D006055 3.4e-97 359.0 277 70.4
Eucgr.H01997 Eucalyptus grandis HOM05D005038 ORTHO05D006055 7.6e-97 357.8 300 65.0
Oeu021840.1 Olea europaea HOM05D005038 ORTHO05D006055 9.9e-97 357.5 276 69.9
Lalb_Chr05g0226661 Lupinus albus HOM05D005038 ORTHO05D006055 3.7e-96 355.5 278 70.5
Gohir.D10G095800 Gossypium hirsutum HOM05D005038 ORTHO05D006055 4.9e-96 355.1 278 70.1
Prupe.7G136500 Prunus persica HOM05D005038 ORTHO05D006055 6.4e-96 354.8 284 69.0
Cc07_g05830 Coffea canephora HOM05D005038 ORTHO05D006055 1.1e-95 354.0 284 70.8
Sed0007672 Sechium edule HOM05D005038 ORTHO05D006055 1.1e-95 354.0 285 72.3
Migut.H00455 Erythranthe guttata HOM05D005038 ORTHO05D006055 2.4e-95 352.8 279 72.8
Aqoxy5G01298 Aquilegia oxysepala HOM05D005038 ORTHO05D006055 4.1e-95 352.1 277 68.2
Lsat_1_v5_gn_2_84360 Lactuca sativa HOM05D005038 ORTHO05D006055 4.1e-95 352.1 279 68.1
Solyc02g090540.4 Solanum lycopersicum HOM05D005038 ORTHO05D006055 5.4e-95 351.7 275 68.7
arahy.Tifrunner.gnm1.ann1.S4TQX4 Arachis hypogaea HOM05D005038 ORTHO05D006055 7.1e-95 351.3 284 69.0
arahy.Tifrunner.gnm1.ann1.MSK3BR Arachis hypogaea HOM05D005038 ORTHO05D006055 9.2e-95 350.9 292 67.1
FAN23G2750 Fragaria x ananassa HOM05D005038 ORTHO05D006055 1.2e-94 350.5 293 67.2
MSTRG.23767 Avicennia marina HOM05D005038 ORTHO05D006055 1.6e-94 350.1 276 71.7
PGSC0003DMG400010021 Solanum tuberosum HOM05D005038 ORTHO05D006055 1.6e-94 350.1 277 68.6
Sopen02g035200 Solanum pennellii HOM05D005038 ORTHO05D006055 2.1e-94 349.7 275 68.4
THA.LOC104821271 Tarenaya hassleriana HOM05D005038 ORTHO05D006055 3.5e-94 349.0 279 66.7
FAN28G2421 Fragaria x ananassa HOM05D005038 ORTHO05D006055 7.8e-94 347.8 293 66.9
FAN26G2456 Fragaria x ananassa HOM05D005038 ORTHO05D006055 1.0e-93 347.4 287 66.9
FAN28G1979 Fragaria x ananassa HOM05D005038 ORTHO05D006055 1.3e-93 347.1 293 66.2
Nitab4.5_0000728g0080 Nicotiana tabacum HOM05D005038 ORTHO05D006055 1.3e-93 347.1 278 69.1
Hund16340 Selenicereus undatus HOM05D005038 ORTHO05D006055 1.7e-93 346.7 282 67.0
BcaB01g00609 Brassica carinata HOM05D005038 ORTHO05D006055 3.0e-93 345.9 281 65.5
Medtr8g079810 Medicago truncatula HOM05D005038 ORTHO05D006055 3.9e-93 345.5 272 72.1
Lj4g0011946 Lotus japonicus HOM05D005038 ORTHO05D006055 8.6e-93 344.4 279 67.4
THA.LOC104827003 Tarenaya hassleriana HOM05D005038 ORTHO05D006055 1.1e-92 344.0 285 63.9
BcaC09g50037 Brassica carinata HOM05D005038 ORTHO05D006055 1.5e-92 343.6 286 65.4
A01p24040 Brassica napus HOM05D005038 ORTHO05D006055 1.5e-92 343.6 286 65.4
C01p29730 Brassica napus HOM05D005038 ORTHO05D006055 1.5e-92 343.6 286 65.4
BolC1t02913H Brassica oleracea HOM05D005038 ORTHO05D006055 1.5e-92 343.6 286 65.4
BraA01t02316Z Brassica rapa HOM05D005038 ORTHO05D006055 1.5e-92 343.6 286 65.4
ECA238G0061 Erigeron canadensis HOM05D005038 ORTHO05D006055 1.5e-92 343.6 280 67.1
AL5G30700 Arabidopsis lyrata HOM05D005038 ORTHO05D006055 2.5e-92 342.8 281 65.5
Sp5g11650 Schrenkiella parvula HOM05D005038 ORTHO05D006055 2.5e-92 342.8 286 65.7
TAR376G0303 Trochodendron aralioides HOM05D005038 ORTHO05D006055 2.5e-92 342.8 277 70.8
AT3G50560 Arabidopsis thaliana HOM05D005038 ORTHO05D006055 7.3e-92 341.3 283 65.7
BcaB05g23223 Brassica carinata HOM05D005038 ORTHO05D006055 7.3e-92 341.3 286 64.3
Peaxi162Scf00049g00149 Petunia axillaris HOM05D005038 ORTHO05D006055 9.6e-92 340.9 276 68.1
Psat4g087880 Pisum sativum HOM05D005038 ORTHO05D006055 9.6e-92 340.9 277 68.2
HanXRQChr03g0061121 Helianthus annuus HOM05D005038 ORTHO05D006055 1.2e-91 340.5 279 65.6
Carub.0005s1688 Capsella rubella HOM05D005038 ORTHO05D006055 3.6e-91 339.0 287 64.5
Thhalv10010624m.g Eutrema salsugineum HOM05D005038 ORTHO05D006055 3.6e-91 339.0 281 64.8
Rhsim08G0102300 Rhododendron simsii HOM05D005038 ORTHO05D006055 6.2e-91 338.2 279 70.3
BolC8t50181H Brassica oleracea HOM05D005038 ORTHO05D006055 8.1e-91 337.8 281 64.1
Nn1g05863 Nelumbo nucifera HOM05D005038 ORTHO05D006055 8.1e-91 337.8 274 66.4
BcaC07g39516 Brassica carinata HOM05D005038 ORTHO05D006055 1.1e-90 337.4 281 63.7
CAN.G836.64 Capsicum annuum HOM05D005038 ORTHO05D006055 1.1e-90 337.4 274 66.4
A09p43580 Brassica napus HOM05D005038 ORTHO05D006055 1.8e-90 336.7 281 63.7
C08p25620 Brassica napus HOM05D005038 ORTHO05D006055 4.0e-90 335.5 281 63.7
Hund13568 Selenicereus undatus HOM05D005038 ORTHO05D006055 6.8e-90 334.7 281 65.8
Glyma.11G057800 Glycine max HOM05D005038 ORTHO05D006055 1.2e-89 334.0 285 68.4
PSO170G1702 Papaver somniferum HOM05D005038 ORTHO05D006055 1.5e-89 333.6 308 62.0
VMungo1215G2888 Vigna mungo HOM05D005038 ORTHO05D006055 4.4e-89 332.0 279 62.4
HanXRQChr14g0448271 Helianthus annuus HOM05D005038 ORTHO05D006055 5.8e-89 331.6 279 64.9
Actinidia16508 Actinidia chinensis HOM05D005038 ORTHO05D006055 1.3e-88 330.5 226 78.3
Lj4A139T89 Lonicera japonica HOM05D005038 ORTHO05D006055 3.8e-88 328.9 294 65.3
Aa31LG4G18730 Aethionema arabicum HOM05D005038 ORTHO05D006055 4.9e-88 328.6 284 63.7
Lj7C62T0 Lonicera japonica HOM05D005038 ORTHO05D006055 1.2e-86 323.9 282 64.9
Lalb_Chr16g0378421 Lupinus albus HOM05D005038 ORTHO05D006055 1.2e-86 323.9 283 63.6
Peaxi162Scf00916g00134 Petunia axillaris HOM05D005038 ORTHO05D006055 2.7e-86 322.8 278 68.7
GSVIVG01006576001 Vitis vinifera HOM05D005038 ORTHO05D006055 4.6e-86 322.0 216 80.6
Lj2g0014661 Lotus japonicus HOM05D005038 ORTHO05D006055 6.0e-86 321.6 282 63.5
Phvul.002G020600 Phaseolus vulgaris HOM05D005038 ORTHO05D006055 1.0e-85 320.9 287 60.6
AUR62003853 Chenopodium quinoa HOM05D005038 ORTHO05D006055 3.9e-85 318.9 276 64.9
PSO017G3935 Papaver somniferum HOM05D005038 ORTHO05D006055 6.6e-85 318.2 310 59.4
TPR.G19012 Trifolium pratense HOM05D005038 ORTHO05D006055 1.1e-84 317.4 252 68.3
Nitab4.5_0000440g0200 Nicotiana tabacum HOM05D005038 ORTHO05D006055 3.6e-83 312.4 214 78.0
PSO675G5181 Papaver somniferum HOM05D005038 ORTHO05D006055 4.0e-82 308.9 305 58.0
PSO732G0767 Papaver somniferum HOM05D005038 ORTHO05D006055 5.3e-82 308.5 294 60.2
PSO675G4848 Papaver somniferum HOM05D005038 ORTHO05D006055 1.2e-81 307.4 297 60.9
PSO675G1229 Papaver somniferum HOM05D005038 ORTHO05D006055 1.5e-81 307.0 299 58.9
SEGI_27725 Sequoiadendron giganteum HOM05D005038 ORTHO05D006055 3.4e-81 305.8 265 61.5
ATR0097G001 Amborella trichopoda HOM05D005038 ORTHO05D006055 9.9e-81 304.3 272 60.3
Dinv39876 Davidia involucrata HOM05D005038 ORTHO05D006055 2.9e-80 302.8 218 77.1
PSO541G2053 Papaver somniferum HOM05D005038 ORTHO05D006055 4.9e-80 302.0 297 61.3
vmacro17934 Vaccinium macrocarpon HOM05D005038 ORTHO05D006055 8.4e-80 301.2 220 73.2
CDE03G0279 Ceratophyllum demersum HOM05D005038 ORTHO05D006055 7.1e-79 298.1 277 59.2
CARHR160070 Cardamine hirsuta HOM05D005038 ORTHO05D006055 2.7e-78 296.2 220 72.7
EL10Ac6g15150 Beta vulgaris HOM05D005038 ORTHO05D006055 2.5e-76 289.7 276 59.1
BraA09t39820Z Brassica rapa HOM05D005038 ORTHO05D006055 2.5e-76 289.7 215 70.2
Os08g0476300 Oryza sativa ssp. japonica HOM05D005038 ORTHO05D006055 1.3e-75 287.3 284 55.3
Lj7C59T8 Lonicera japonica HOM05D005038 ORTHO05D006055 1.6e-70 270.4 296 55.4
Nitab4.5_0013126g0010 Nicotiana tabacum HOM05D005038 ORTHO05D006055 2.6e-65 253.1 180 78.3
Phvul.003G245900 Phaseolus vulgaris HOM05D005038 ORTHO05D006055 3.2e-63 246.1 190 73.2
Pp3c25_14660 Physcomitrium patens HOM05D005038 ORTHO05D006055 4.3e-60 235.7 265 48.3
Zm00001eb038220 Zea mays HOM05D005038 ORTHO05D006055 4.3e-60 235.7 233 56.2
Mapoly0021s0094 Marchantia polymorpha HOM05D005038 ORTHO05D006055 9.6e-60 234.6 266 50.0
SMO364G0608 Selaginella moellendorffii HOM05D005038 ORTHO05D006055 2.8e-59 233.0 263 48.3
SGA_v2.0_scaffold15G07261 Striga asiatica HOM05D005038 ORTHO05D006055 1.1e-52 211.1 287 49.5
Lalb_Chr16g0378241 Lupinus albus HOM05D005038 ORTHO05D006055 3.3e-52 209.5 187 64.7
Dinv29965 Davidia involucrata HOM05D005038 ORTHO05D006055 7.4e-52 208.4 201 61.7
AUR62001954 Chenopodium quinoa HOM05D005038 ORTHO05D006055 1.0e-37 161.4 126 65.9
MSTRG.2897 Avicennia marina HOM05D005038 ORTHO05D006055 1.5e-36 157.5 123 72.4
arahy.Tifrunner.gnm1.ann1.647UNH Arachis hypogaea HOM05D005038 ORTHO05D006055 1.8e-26 124.0 100 74.0
Pp3c4_31290 Physcomitrium patens HOM05D005038 ORTHO05D006055 2.0e-25 120.6 266 30.1
Mapoly0010s0198 Marchantia polymorpha HOM05D005038 ORTHO05D006055 2.7e-25 120.2 264 29.9
CDE06G1667 Ceratophyllum demersum HOM05D005038 ORTHO05D006055 8.0e-22 108.6 105 53.3
PRCOL_00004651 Prasinoderma coloniale HOM05D005038 ORTHO05D006055 4.9e-11 72.8 265 25.3
PRCOL_00004339 Prasinoderma coloniale HOM05D005038 ORTHO05D006055 5.4e-10 69.3 198 26.8
Nitab4.5_0013126g0020 Nicotiana tabacum HOM05D005038 ORTHO05D006055 1.7e-08 64.3 35 74.3


User provided reference genes

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