Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra07G0030300 Salix brachista HOM05D004524 ORTHO05D005477 0.0e+00 6425.1 3236 100.0
Potri.007G034900 Populus trichocarpa HOM05D004524 ORTHO05D005477 0.0e+00 5253.7 3268 84.0
Manes.13G131650 Manihot esculenta HOM05D004524 ORTHO05D005477 0.0e+00 3793.8 3282 61.1
Atru.chr3.464 Acer truncatum HOM05D004524 ORTHO05D005477 0.0e+00 3456.0 3328 56.4
Ciclev10024678m.g Citrus clementina HOM05D004524 ORTHO05D005477 0.0e+00 3289.6 3322 54.0
Prupe.7G144700 Prunus persica HOM05D004524 ORTHO05D005477 0.0e+00 3240.7 3331 52.7
Duzib187G1201 Durio zibethinus HOM05D004524 ORTHO05D005477 0.0e+00 3229.1 3319 53.7
TWI53G1766 Tripterygium wilfordii HOM05D004524 ORTHO05D005477 0.0e+00 3211.0 3304 53.5
Cfa004228 Carpinus fangiana HOM05D004524 ORTHO05D005477 0.0e+00 3163.2 3330 52.7
CiPaw.01G027900 Carya illinoinensis HOM05D004524 ORTHO05D005477 0.0e+00 3159.0 3327 52.7
Gorai.007G208400 Gossypium raimondii HOM05D004524 ORTHO05D005477 0.0e+00 3136.7 3314 52.4
MD02G1159300 Malus domestica HOM05D004524 ORTHO05D005477 0.0e+00 3085.8 3299 51.7
TAR628G0958 Trochodendron aralioides HOM05D004524 ORTHO05D005477 0.0e+00 3084.7 3390 51.2
RcHm_v2.0_Chr2g0103341 Rosa chinensis HOM05D004524 ORTHO05D005477 0.0e+00 3043.4 3378 50.5
Gohir.A11G188400 Gossypium hirsutum HOM05D004524 ORTHO05D005477 0.0e+00 2996.5 3312 51.1
QL06p044160 Quercus lobata HOM05D004524 ORTHO05D005477 0.0e+00 2977.6 3983 44.9
FAN19G0876 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 2976.8 3359 50.3
FAN23G1697 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 2973.0 3354 50.3
Thecc.01G046200 Theobroma cacao HOM05D004524 ORTHO05D005477 0.0e+00 2929.8 2960 54.2
CANSAT01G1357 Cannabis sativa HOM05D004524 ORTHO05D005477 0.0e+00 2928.7 3329 49.6
FvH4_1g14580 Fragaria vesca HOM05D004524 ORTHO05D005477 0.0e+00 2925.2 3373 49.6
Gohir.D11G194900 Gossypium hirsutum HOM05D004524 ORTHO05D005477 0.0e+00 2887.8 3032 52.8
FAN26G3430 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 2782.7 3408 47.8
Nn5g29420 Nelumbo nucifera HOM05D004524 ORTHO05D005477 0.0e+00 2756.1 3346 47.2
Dinv26770 Davidia involucrata HOM05D004524 ORTHO05D005477 0.0e+00 2755.7 3094 50.9
Glyma.16G144200 Glycine max HOM05D004524 ORTHO05D005477 0.0e+00 2746.5 3311 47.4
Lalb_Chr05g0226951 Lupinus albus HOM05D004524 ORTHO05D005477 0.0e+00 2727.6 3316 46.5
Lj4g0019712 Lotus japonicus HOM05D004524 ORTHO05D005477 0.0e+00 2713.3 3312 47.3
Medtr8g078970 Medicago truncatula HOM05D004524 ORTHO05D005477 0.0e+00 2680.6 3317 46.4
THA.LOC104827123 Tarenaya hassleriana HOM05D004524 ORTHO05D005477 0.0e+00 2676.0 3316 46.3
Ca_22222_v3 Cicer arietinum L. HOM05D004524 ORTHO05D005477 0.0e+00 2653.2 3327 46.0
PGR102G0585 Punica granatum HOM05D004524 ORTHO05D005477 0.0e+00 2641.7 3313 45.6
Rhsim08G0108900 Rhododendron simsii HOM05D004524 ORTHO05D005477 0.0e+00 2640.9 3592 44.2
Carub.0005s1670 Capsella rubella HOM05D004524 ORTHO05D005477 0.0e+00 2599.7 3319 45.4
Aqoxy5G01755 Aquilegia oxysepala HOM05D004524 ORTHO05D005477 0.0e+00 2593.1 3354 44.6
AL5G30510 Arabidopsis lyrata HOM05D004524 ORTHO05D005477 0.0e+00 2586.6 3317 45.2
Thhalv10027614m.g Eutrema salsugineum HOM05D004524 ORTHO05D005477 0.0e+00 2544.2 3319 45.2
A01p24160 Brassica napus HOM05D004524 ORTHO05D005477 0.0e+00 2538.1 3313 44.7
BraA01t02328Z Brassica rapa HOM05D004524 ORTHO05D005477 0.0e+00 2538.1 3313 44.7
BcaB05g23215 Brassica carinata HOM05D004524 ORTHO05D005477 0.0e+00 2526.5 3315 44.6
BolC1t02927H Brassica oleracea HOM05D004524 ORTHO05D005477 0.0e+00 2521.1 3297 44.7
arahy.Tifrunner.gnm1.ann1.7NUW0V Arachis hypogaea HOM05D004524 ORTHO05D005477 0.0e+00 2513.0 3299 44.5
BcaC09g50025 Brassica carinata HOM05D004524 ORTHO05D005477 0.0e+00 2502.6 3310 44.4
Sed0025355 Sechium edule HOM05D004524 ORTHO05D005477 0.0e+00 2490.7 3339 44.8
Cc07_g05430 Coffea canephora HOM05D004524 ORTHO05D005477 0.0e+00 2483.4 3356 43.9
PSO170G3447 Papaver somniferum HOM05D004524 ORTHO05D005477 0.0e+00 2479.9 3348 43.2
Aa31LG4G18620 Aethionema arabicum HOM05D004524 ORTHO05D005477 0.0e+00 2478.0 3357 43.1
TPR.G11249 Trifolium pratense HOM05D004524 ORTHO05D005477 0.0e+00 2456.4 3208 45.2
PSO700G0043 Papaver somniferum HOM05D004524 ORTHO05D005477 0.0e+00 2430.6 3328 42.9
Sc16g0001530 Simmondsia chinensis HOM05D004524 ORTHO05D005477 0.0e+00 2391.3 3345 43.0
Phvul.003G249100 Phaseolus vulgaris HOM05D004524 ORTHO05D005477 0.0e+00 2390.1 3127 44.6
CsaV3_6G042750 Cucumis sativus L. HOM05D004524 ORTHO05D005477 0.0e+00 2345.5 3339 42.7
Migut.H00497 Erythranthe guttata HOM05D004524 ORTHO05D005477 0.0e+00 2342.4 3360 41.9
HanXRQChr12g0378491 Helianthus annuus HOM05D004524 ORTHO05D005477 0.0e+00 2337.0 3304 43.5
MSTRG.23802 Avicennia marina HOM05D004524 ORTHO05D005477 0.0e+00 2333.5 3364 41.8
Hund14111 Selenicereus undatus HOM05D004524 ORTHO05D005477 0.0e+00 2328.5 3382 41.6
AUR62003242 Chenopodium quinoa HOM05D004524 ORTHO05D005477 0.0e+00 2312.3 3354 42.1
Lsat_1_v5_gn_3_94181 Lactuca sativa HOM05D004524 ORTHO05D005477 0.0e+00 2310.8 3294 42.5
MELO3C007516.2 Cucumis melo HOM05D004524 ORTHO05D005477 0.0e+00 2308.1 3346 42.4
C01p29870 Brassica napus HOM05D004524 ORTHO05D005477 0.0e+00 2307.3 3000 45.1
Sopen02g034830 Solanum pennellii HOM05D004524 ORTHO05D005477 0.0e+00 2301.6 3363 41.6
GSVIVG01005092001 Vitis vinifera HOM05D004524 ORTHO05D005477 0.0e+00 2294.2 2336 53.8
EL10Ac6g14835 Beta vulgaris HOM05D004524 ORTHO05D005477 0.0e+00 2287.3 3395 41.0
ECA246G4564 Erigeron canadensis HOM05D004524 ORTHO05D005477 0.0e+00 2282.3 3250 42.7
SalBow1G7798 Salvia bowleyana HOM05D004524 ORTHO05D005477 0.0e+00 2268.0 3362 40.7
SGA_v2.0_scaffold15G07211 Striga asiatica HOM05D004524 ORTHO05D005477 0.0e+00 2186.8 3381 40.0
AT3G50380 Arabidopsis thaliana HOM05D004524 ORTHO05D005477 0.0e+00 2176.0 2593 47.2
Sp5g11790 Schrenkiella parvula HOM05D004524 ORTHO05D005477 0.0e+00 2117.8 3007 42.6
Psat0s4220g0040 Pisum sativum HOM05D004524 ORTHO05D005477 0.0e+00 2117.0 2392 50.0
arahy.Tifrunner.gnm1.ann1.S59764 Arachis hypogaea HOM05D004524 ORTHO05D005477 0.0e+00 2105.9 2434 49.0
Ah.02g126100 Amaranthus hybridus HOM05D004524 ORTHO05D005477 0.0e+00 2096.6 3282 40.2
ATR0733G201 Amborella trichopoda HOM05D004524 ORTHO05D005477 0.0e+00 2006.1 3422 37.8
DCAR_025673 Daucus carota HOM05D004524 ORTHO05D005477 0.0e+00 1872.4 2955 38.7
Peaxi162Scf00535g00735 Petunia axillaris HOM05D004524 ORTHO05D005477 0.0e+00 1790.4 1835 52.4
Solyc02g090130.4 Solanum lycopersicum HOM05D004524 ORTHO05D005477 0.0e+00 1741.1 1910 49.7
Haze_15172 Corylus avellana HOM05D004524 ORTHO05D005477 0.0e+00 1687.2 1317 65.7
Zm00001eb030660 Zea mays HOM05D004524 ORTHO05D005477 0.0e+00 1679.8 3384 33.9
Eucgr.H01945 Eucalyptus grandis HOM05D004524 ORTHO05D005477 0.0e+00 1678.3 1476 58.0
ClCG01G016470 Citrullus lanatus HOM05D004524 ORTHO05D005477 0.0e+00 1627.1 2698 38.6
CDE01G0297 Ceratophyllum demersum HOM05D004524 ORTHO05D005477 0.0e+00 1621.7 1699 51.3
VMungo0251G2856 Vigna mungo HOM05D004524 ORTHO05D005477 0.0e+00 1609.0 1363 60.6
vmacro17888 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 0.0e+00 1550.8 1401 58.5
CAN.G836.23 Capsicum annuum HOM05D004524 ORTHO05D005477 0.0e+00 1523.1 1379 57.5
Nitab4.5_0000108g0200 Nicotiana tabacum HOM05D004524 ORTHO05D005477 0.0e+00 1506.5 1594 52.1
FAN28G0821 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 1503.4 1232 63.2
CARHR159880 Cardamine hirsuta HOM05D004524 ORTHO05D005477 0.0e+00 1440.2 1371 55.7
unitig_62.g23407 Utricularia gibba HOM05D004524 ORTHO05D005477 0.0e+00 1399.4 3278 31.5
HPP92_018815 Vanilla planifolia HOM05D004524 ORTHO05D005477 0.0e+00 1392.1 1715 45.0
MBI16_g31331_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 0.0e+00 1274.2 2556 35.0
AUR62027230 Chenopodium quinoa HOM05D004524 ORTHO05D005477 0.0e+00 1266.9 1242 54.1
Mapoly0053s0053 Marchantia polymorpha HOM05D004524 ORTHO05D005477 0.0e+00 1107.0 2007 35.9
CARHR159890 Cardamine hirsuta HOM05D004524 ORTHO05D005477 2.2e-311 1074.3 1931 37.8
Lj7A15G49 Lonicera japonica HOM05D004524 ORTHO05D005477 4.4e-311 1073.2 1483 44.2
Pp3c8_13080 Physcomitrium patens HOM05D004524 ORTHO05D005477 2.6e-302 1043.9 2349 32.1
AagrBONN_evm.TU.Sc2ySwM_344.2829 Anthoceros agrestis HOM05D004524 ORTHO05D005477 1.2e-299 1035.0 2105 34.0
Nitab4.5_0001014g0170 Nicotiana tabacum HOM05D004524 ORTHO05D005477 1.9e-284 984.6 1113 48.9
SEGI_08749 Sequoiadendron giganteum HOM05D004524 ORTHO05D005477 9.0e-279 965.7 1352 42.5
CAN.G836.24 Capsicum annuum HOM05D004524 ORTHO05D005477 2.9e-245 854.4 1969 31.4
Actinidia30986 Actinidia chinensis HOM05D004524 ORTHO05D005477 6.1e-243 846.7 595 70.4
AUR62027229 Chenopodium quinoa HOM05D004524 ORTHO05D005477 2.4e-239 834.7 1951 32.5
Haze_15174 Corylus avellana HOM05D004524 ORTHO05D005477 1.1e-220 772.7 1555 36.7
Oeu032928.5 Olea europaea HOM05D004524 ORTHO05D005477 2.0e-201 708.8 1814 30.3
MBI16_g31332_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 2.6e-201 708.4 646 57.9
HPP92_018739 Vanilla planifolia HOM05D004524 ORTHO05D005477 1.3e-192 679.5 2223 27.8
VMungo0251G1417 Vigna mungo HOM05D004524 ORTHO05D005477 7.1e-167 594.0 1023 38.6
Hma1.2p1_0261F.1_g105050 Hydrangea macrophylla HOM05D004524 ORTHO05D005477 1.6e-163 582.8 892 40.1
vmacro17890 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 5.1e-149 534.6 935 37.0
ClCG01G016450 Citrullus lanatus HOM05D004524 ORTHO05D005477 1.4e-146 526.6 469 59.1
Lj7A15G50 Lonicera japonica HOM05D004524 ORTHO05D005477 5.5e-143 514.6 881 37.3
Nitab4.5_0000108g0190 Nicotiana tabacum HOM05D004524 ORTHO05D005477 6.0e-142 511.1 1310 30.4
Eucgr.H01946 Eucalyptus grandis HOM05D004524 ORTHO05D005477 7.9e-142 510.8 874 36.2
Psat0s4301g0040 Pisum sativum HOM05D004524 ORTHO05D005477 6.7e-141 507.7 933 34.4
Nitab4.5_0001014g0150 Nicotiana tabacum HOM05D004524 ORTHO05D005477 4.3e-140 505.0 1307 29.7
Peaxi162Scf00535g00736 Petunia axillaris HOM05D004524 ORTHO05D005477 2.1e-134 486.1 1313 28.9
arahy.Tifrunner.gnm1.ann1.Z7Z8T5 Arachis hypogaea HOM05D004524 ORTHO05D005477 5.3e-130 471.5 879 33.9
vmacro17889 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 1.7e-128 466.5 914 36.1
CBR_g51675 Chara braunii HOM05D004524 ORTHO05D005477 7.7e-113 414.5 464 45.3
PGSC0003DMG400010031 Solanum tuberosum HOM05D004524 ORTHO05D005477 1.7e-112 413.3 1214 28.6
COL.COLO4_22188 Corchorus olitorius HOM05D004524 ORTHO05D005477 3.0e-101 375.9 975 31.2
Migut.H00499 Erythranthe guttata HOM05D004524 ORTHO05D005477 1.3e-96 360.5 334 57.5
Dinv26771 Davidia involucrata HOM05D004524 ORTHO05D005477 8.5e-96 357.8 217 78.8
COL.COLO4_22187 Corchorus olitorius HOM05D004524 ORTHO05D005477 1.7e-91 343.6 225 73.8
CDE01G0100 Ceratophyllum demersum HOM05D004524 ORTHO05D005477 3.7e-83 315.8 1194 27.2
VMungo0251G3212 Vigna mungo HOM05D004524 ORTHO05D005477 1.3e-80 307.4 680 32.4
Cpa.g.sc15.79 Carica papaya HOM05D004524 ORTHO05D005477 1.4e-69 270.8 527 38.5
Cpa.g.sc15.77 Carica papaya HOM05D004524 ORTHO05D005477 6.8e-69 268.5 448 39.1
FAN08G2497 Fragaria x ananassa HOM05D007595 ORTHO05D009570 3.7e-67 262.7 186 68.8
ClCG01G016440 Citrullus lanatus HOM05D004524 ORTHO05D005477 7.3e-63 248.4 207 60.4
CSS0018787 Camellia sinensis var. sinensis HOM05D004524 ORTHO05D005477 8.4e-59 235.0 377 42.2
FvH4_5g25081 Fragaria vesca HOM05D004524 ORTHO05D005477 3.3e-55 223.0 153 70.6
Haze_15173 Corylus avellana HOM05D004524 ORTHO05D005477 7.1e-50 205.3 156 64.1
Zm00001eb381690 Zea mays HOM05D004524 ORTHO05D005477 1.0e-48 201.4 146 65.1
Zm00001eb381740 Zea mays HOM05D004524 ORTHO05D005477 1.0e-48 201.4 146 65.1
Zm00001eb383180 Zea mays HOM05D004524 ORTHO05D005477 1.0e-48 201.4 145 65.5
GSVIVG01005094001 Vitis vinifera HOM05D004524 ORTHO05D005477 3.1e-45 189.9 105 83.8
FAN18G1633 Fragaria x ananassa HOM05D004524 ORTHO05D005477 3.4e-44 186.4 170 57.6
Os12g0594200 Oryza sativa ssp. japonica HOM05D004524 ORTHO05D005477 3.0e-40 173.3 812 23.8
Duzib147G0073 Durio zibethinus HOM05D004524 ORTHO05D005477 5.3e-37 162.5 213 45.5
Cpa.g.sc15.83 Carica papaya HOM05D004524 ORTHO05D005477 1.8e-32 147.5 177 45.2
Cpa.g.sc15.76 Carica papaya HOM05D004524 ORTHO05D005477 5.6e-31 142.5 114 57.9
arahy.Tifrunner.gnm1.ann1.Y36QTI Arachis hypogaea HOM05D004524 ORTHO05D005477 6.2e-30 139.0 225 33.3
SEGI_31558 Sequoiadendron giganteum HOM05D057139 ORTHO05D037600 9.3e-26 125.2 636 23.4
HPP92_018740 Vanilla planifolia HOM05D004524 ORTHO05D005477 1.2e-25 124.8 332 29.5
CBR_g36529 Chara braunii HOM05D000019 ORTHO05D000002 1.6e-25 124.4 506 25.9
Glyma.02G062100 Glycine max HOM05D004524 ORTHO05D005477 1.6e-25 124.4 205 33.2
Glyma.02G062000 Glycine max HOM05D004524 ORTHO05D005477 6.7e-24 119.0 264 31.8
Migut.H00498 Erythranthe guttata HOM05D004524 ORTHO05D005477 1.1e-23 118.2 73 72.6
Cpa.g.sc15.82 Carica papaya HOM05D004524 ORTHO05D005477 2.4e-21 110.5 120 50.0
Thhalv10006113m.g Eutrema salsugineum HOM05D004524 ORTHO05D005477 1.2e-20 108.2 320 29.7
SEGI_01312 Sequoiadendron giganteum HOM05D057139 ORTHO05D037600 5.9e-20 105.9 847 20.5
GSVIVG01006100001 Vitis vinifera HOM05D004524 ORTHO05D005477 1.4e-18 101.3 60 80.0
SEGI_30472 Sequoiadendron giganteum HOM05D004524 ORTHO05D037600 2.5e-15 90.5 200 28.0
Lsat_1_v5_gn_8_103301 Lactuca sativa HOM05D004524 ORTHO05D005477 1.6e-14 87.8 119 44.5
EL10As7g23744 Beta vulgaris HOM05D004524 ORTHO05D014474 4.1e-13 83.2 156 37.2
Sc03g0009100 Simmondsia chinensis HOM05D004524 ORTHO05D005477 6.5e-11 75.9 102 37.3
Actinidia04030 Actinidia chinensis HOM05D004524 ORTHO05D005477 1.4e-10 74.7 69 56.5
EL10As4g23458 Beta vulgaris HOM05D004524 ORTHO05D005477 7.2e-10 72.4 220 27.7
Psat3g094640 Pisum sativum HOM05D004524 ORTHO05D005477 5.1e-08 66.2 70 47.1
Glyma.02G061902 Glycine max HOM05D004524 ORTHO05D005477 1.3e-06 61.6 41 70.7


User provided reference genes

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