Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra07G0024800 Salix brachista HOM05D004086 ORTHO05D004641 0.0e+00 1332.4 691 100.0
Potri.007G028600 Populus trichocarpa HOM05D004086 ORTHO05D004641 0.0e+00 1190.6 691 90.7
Manes.07G068600 Manihot esculenta HOM05D004086 ORTHO05D004641 3.1e-213 745.7 745 56.6
TWI09G1017 Tripterygium wilfordii HOM05D004086 ORTHO05D004641 1.9e-186 656.8 734 51.8
Thecc.01G039100 Theobroma cacao HOM05D004086 ORTHO05D004641 2.6e-183 646.4 739 51.7
Duzib264G0994 Durio zibethinus HOM05D004086 ORTHO05D004641 3.5e-180 636.0 736 50.4
GSVIVG01018995001 Vitis vinifera HOM05D004086 ORTHO05D004641 2.3e-176 623.2 735 50.1
Ciclev10025048m.g Citrus clementina HOM05D004086 ORTHO05D004641 4.9e-174 615.5 729 50.8
CANSAT01G2856 Cannabis sativa HOM05D004086 ORTHO05D004641 7.0e-173 611.7 727 50.5
CsaV3_4G005180 Cucumis sativus L. HOM05D004086 ORTHO05D004641 3.6e-169 599.4 742 47.4
MELO3C017544.2 Cucumis melo HOM05D004086 ORTHO05D004641 4.0e-168 595.9 744 47.7
Actinidia36545 Actinidia chinensis HOM05D004086 ORTHO05D004641 2.2e-166 590.1 729 48.6
CSS0022456 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 8.3e-166 588.2 733 48.6
CSS0048181 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 1.4e-165 587.4 733 48.3
Sed0023254 Sechium edule HOM05D004086 ORTHO05D004641 1.1e-162 577.8 737 47.9
Hma1.2p1_0400F.1_g144650 Hydrangea macrophylla HOM05D004086 ORTHO05D004641 2.5e-162 576.6 719 48.7
Gorai.007G205200 Gossypium raimondii HOM05D004086 ORTHO05D004641 2.8e-161 573.2 745 48.6
Gohir.D11G192200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 3.6e-161 572.8 745 48.6
ClCG07G009030 Citrullus lanatus HOM05D004086 ORTHO05D004641 4.0e-160 569.3 739 46.4
Gohir.A11G185700 Gossypium hirsutum HOM05D004086 ORTHO05D004641 5.2e-160 568.9 749 47.0
TAR628G1622 Trochodendron aralioides HOM05D004086 ORTHO05D004641 5.8e-159 565.5 729 48.1
Cc07_g09240 Coffea canephora HOM05D004086 ORTHO05D004641 6.0e-156 555.4 725 45.9
Gohir.D11G227980 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.7e-155 553.9 745 47.7
Actinidia12113 Actinidia chinensis HOM05D004086 ORTHO05D004641 2.5e-154 550.1 728 47.1
Dinv39963 Davidia involucrata HOM05D004086 ORTHO05D004641 3.3e-154 549.7 737 46.4
MD02G1151400 Malus domestica HOM05D004086 ORTHO05D004641 1.6e-153 547.4 736 46.3
Lj5A533G14 Lonicera japonica HOM05D004086 ORTHO05D004641 3.1e-152 543.1 685 47.3
Prupe.7G151600 Prunus persica HOM05D004086 ORTHO05D004641 1.2e-151 541.2 748 45.2
DCAR_025930 Daucus carota HOM05D004086 ORTHO05D004641 2.6e-151 540.0 725 46.3
QL06p045466 Quercus lobata HOM05D004086 ORTHO05D004641 2.2e-150 537.0 715 48.3
Eucgr.H01260 Eucalyptus grandis HOM05D004086 ORTHO05D004641 3.7e-150 536.2 664 47.6
MSTRG.23544 Avicennia marina HOM05D004086 ORTHO05D004641 6.4e-150 535.4 723 43.3
RcHm_v2.0_Chr2g0102021 Rosa chinensis HOM05D004086 ORTHO05D004641 2.4e-149 533.5 741 45.9
vmacro07910 Vaccinium macrocarpon HOM05D004086 ORTHO05D004641 3.2e-149 533.1 723 46.1
Gohir.D11G227900 Gossypium hirsutum HOM05D004086 ORTHO05D004641 5.4e-149 532.3 658 48.8
COL.COLO4_22111 Corchorus olitorius HOM05D004086 ORTHO05D004641 1.6e-145 520.8 739 44.9
THA.LOC104819797 Tarenaya hassleriana HOM05D004086 ORTHO05D004641 3.1e-144 516.5 723 44.5
Ca_00390_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 9.9e-143 511.5 742 42.3
FAN19G3131 Fragaria x ananassa HOM05D004086 ORTHO05D004641 2.4e-141 506.9 732 44.1
EL10Ac7g17738 Beta vulgaris HOM05D004086 ORTHO05D004641 2.7e-140 503.4 718 46.0
Sopen08g027080 Solanum pennellii HOM05D004086 ORTHO05D004641 1.3e-139 501.1 726 43.8
FAN26G0470 Fragaria x ananassa HOM05D004086 ORTHO05D004641 3.0e-139 500.0 735 45.2
ECA232G4057 Erigeron canadensis HOM05D004086 ORTHO05D001499 5.1e-139 499.2 722 43.6
Solyc08g078600.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 6.6e-139 498.8 728 42.9
FvH4_1g13700 Fragaria vesca HOM05D004086 ORTHO05D004641 8.7e-139 498.4 732 43.7
Lalb_Chr20g0123501 Lupinus albus HOM05D004086 ORTHO05D004641 8.7e-139 498.4 745 43.6
Hund05506 Selenicereus undatus HOM05D004086 ORTHO05D004641 3.3e-138 496.5 704 46.2
Nitab4.5_0008457g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 7.3e-138 495.4 737 43.3
PGSC0003DMG400004762 Solanum tuberosum HOM05D004086 ORTHO05D004641 1.2e-137 494.6 719 43.5
Medtr5g019810 Medicago truncatula HOM05D004086 ORTHO05D004641 1.6e-137 494.2 729 42.1
FAN28G1508 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.4e-136 491.1 751 43.1
CARHR287960 Cardamine hirsuta HOM05D004086 ORTHO05D004641 2.4e-136 490.3 660 45.6
Glyma.11G009900 Glycine max HOM05D004086 ORTHO05D004641 2.4e-136 490.3 745 44.4
AT5G49530 Arabidopsis thaliana HOM05D004086 ORTHO05D004641 3.1e-136 490.0 732 44.8
FAN23G2825 Fragaria x ananassa HOM05D004086 ORTHO05D004641 3.1e-136 490.0 755 43.0
VMungo1215G0116 Vigna mungo HOM05D004086 ORTHO05D004641 7.6e-135 485.3 740 42.7
Lj5g0019705 Lotus japonicus HOM05D004086 ORTHO05D004641 2.9e-134 483.4 637 45.4
Sp2g19840 Schrenkiella parvula HOM05D004086 ORTHO05D004641 3.8e-134 483.0 733 42.6
CAN.G1058.29 Capsicum annuum HOM05D004086 ORTHO05D004641 5.4e-133 479.2 726 42.1
A06p38290 Brassica napus HOM05D004086 ORTHO05D004641 1.2e-132 478.0 741 42.0
BraA06t26744Z Brassica rapa HOM05D004086 ORTHO05D004641 1.2e-132 478.0 741 42.0
Phvul.002G040400 Phaseolus vulgaris HOM05D004086 ORTHO05D004641 1.2e-132 478.0 628 46.7
Migut.H00181 Erythranthe guttata HOM05D004086 ORTHO05D004641 4.6e-132 476.1 720 42.4
Nn5g29538 Nelumbo nucifera HOM05D004086 ORTHO05D004641 1.0e-131 474.9 566 48.8
Nitab4.5_0010593g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.3e-131 474.6 795 41.4
BolC7t44527H Brassica oleracea HOM05D004086 ORTHO05D004641 1.7e-131 474.2 740 41.5
TPR.G18816 Trifolium pratense HOM05D004086 ORTHO05D004641 1.7e-131 474.2 733 40.8
CiPaw.02G015600 Carya illinoinensis HOM05D004086 ORTHO05D004641 2.3e-131 473.8 739 42.2
Peaxi162Scf00515g00225 Petunia axillaris HOM05D004086 ORTHO05D004641 3.9e-131 473.0 731 43.5
Carub.0008s0941 Capsella rubella HOM05D004086 ORTHO05D004641 1.1e-130 471.5 654 43.7
C07p39950 Brassica napus HOM05D004086 ORTHO05D004641 9.6e-130 468.4 736 41.8
Thhalv10003751m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 2.1e-129 467.2 727 41.4
Ah.15g091580 Amaranthus hybridus HOM05D004086 ORTHO05D004641 2.6e-127 460.3 699 42.8
AL8G23320 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 3.4e-127 459.9 677 43.0
AUR62008836 Chenopodium quinoa HOM05D004086 ORTHO05D004641 1.2e-124 451.4 697 43.3
Psat2g160960 Pisum sativum HOM05D004086 ORTHO05D004641 2.7e-124 450.3 671 41.1
ECA238G3830 Erigeron canadensis HOM05D004086 ORTHO05D004641 1.8e-123 447.6 606 44.2
HanXRQChr09g0262111 Helianthus annuus HOM05D004086 ORTHO05D004641 3.0e-123 446.8 607 43.2
Atru.chr3.545 Acer truncatum HOM05D004086 ORTHO05D004641 5.3e-120 436.0 592 45.4
Aa31LG11G8330 Aethionema arabicum HOM05D004086 ORTHO05D004641 2.6e-119 433.7 733 39.0
Rhsim03G0093700 Rhododendron simsii HOM05D004086 ORTHO05D004641 1.7e-118 431.0 758 40.4
Aqoxy6G01048 Aquilegia oxysepala HOM05D004086 ORTHO05D004641 4.6e-116 422.9 628 41.9
CAN.G358.119 Capsicum annuum HOM05D004086 ORTHO05D004641 7.9e-116 422.2 710 39.6
arahy.Tifrunner.gnm1.ann1.FS5W7P Arachis hypogaea HOM05D004086 ORTHO05D004641 1.0e-115 421.8 655 42.1
arahy.Tifrunner.gnm1.ann1.4T6GLU Arachis hypogaea HOM05D004086 ORTHO05D004641 1.3e-115 421.4 734 40.5
PSO675G7346 Papaver somniferum HOM05D004086 ORTHO05D004641 1.8e-115 421.0 615 41.8
DCAR_023357 Daucus carota HOM05D004086 ORTHO05D004641 5.1e-115 419.5 728 38.5
Lsat_1_v5_gn_4_150860 Lactuca sativa HOM05D004086 ORTHO05D004641 1.5e-114 417.9 655 41.4
Sopen02g030230 Solanum pennellii HOM05D004086 ORTHO05D004641 1.6e-113 414.5 723 37.9
AUR62025406 Chenopodium quinoa HOM05D004086 ORTHO05D004641 2.8e-113 413.7 668 41.6
Solyc02g085560.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 3.7e-113 413.3 721 37.7
Oeu053005.1 Olea europaea HOM05D004086 ORTHO05D004641 9.7e-106 388.7 559 43.5
PSO541G3560 Papaver somniferum HOM05D004086 ORTHO05D004641 3.1e-104 383.6 727 37.4
COL.COLO4_14865 Corchorus olitorius HOM05D004086 ORTHO05D004641 6.5e-102 375.9 533 46.2
Haze_02099 Corylus avellana HOM05D004086 ORTHO05D004641 1.2e-100 371.7 700 38.1
unitig_52.g17585 Utricularia gibba HOM05D004086 ORTHO05D004641 3.1e-96 357.1 612 38.6
SpUn0021_0010 Schrenkiella parvula HOM05D004086 ORTHO05D004641 1.2e-92 345.1 544 41.9
Medtr5g026040 Medicago truncatula HOM05D004086 ORTHO05D004641 6.1e-92 342.8 546 40.3
Nitab4.5_0001279g0090 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.0e-91 342.0 500 42.2
HPP92_015988 Vanilla planifolia HOM05D004086 ORTHO05D004641 1.5e-90 338.2 726 35.5
Ah.15g091670 Amaranthus hybridus HOM05D004086 ORTHO05D004641 2.0e-87 327.8 467 43.0
Haze_15127 Corylus avellana HOM05D004086 ORTHO05D004641 3.8e-86 323.6 511 42.5
ATR0064G058 Amborella trichopoda HOM05D004086 ORTHO05D004641 8.5e-86 322.4 699 35.2
AagrBONN_evm.TU.Sc2ySwM_344.3508 Anthoceros agrestis HOM05D004086 ORTHO05D004641 4.7e-84 316.6 770 32.9
MD15G1266000 Malus domestica HOM05D004086 ORTHO05D004641 4.7e-84 316.6 570 38.8
CDE05G2435 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 6.1e-84 316.2 426 44.1
Thhalv10023969m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 3.3e-82 310.5 556 37.4
Mapoly0113s0019 Marchantia polymorpha HOM05D004086 ORTHO05D004641 4.4e-82 310.1 674 34.7
Pp3c2_15450 Physcomitrium patens HOM05D004086 ORTHO05D004641 7.4e-82 309.3 736 33.8
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 1.7e-81 308.1 521 37.4
Cpa.g.sc353.3 Carica papaya HOM05D004086 ORTHO05D004641 1.6e-79 301.6 388 46.1
SMO203G0104 Selaginella moellendorffii HOM05D004086 ORTHO05D004641 4.5e-79 300.1 644 34.6
Sc17g0002710 Simmondsia chinensis HOM05D004086 ORTHO05D004641 9.4e-77 292.4 396 43.4
Lsat_1_v5_gn_4_150881 Lactuca sativa HOM05D004086 ORTHO05D004641 3.3e-74 283.9 603 32.8
CBR_g22032 Chara braunii HOM05D004086 ORTHO05D004641 1.1e-72 278.9 693 32.3
CBR_g50911 Chara braunii HOM05D004086 ORTHO05D004641 4.5e-71 273.5 698 32.2
CBR_g50913 Chara braunii HOM05D004086 ORTHO05D004641 4.5e-71 273.5 698 32.2
CDE10G1264 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 5.9e-71 273.1 618 34.1
FvH4_2g10200 Fragaria vesca HOM05D004086 ORTHO05D004641 9.4e-69 265.8 510 37.8
AL5G27650 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 1.6e-68 265.0 504 36.3
Nitab4.5_0004445g0020 Nicotiana tabacum HOM05D004086 ORTHO05D004641 2.7e-63 247.7 363 41.0
HPP92_026151 Vanilla planifolia HOM05D004086 ORTHO05D004641 1.0e-51 209.1 458 34.5
Ca_29955_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 1.7e-49 201.8 377 35.0
Haze_02100 Corylus avellana HOM05D004086 ORTHO05D004641 2.9e-49 201.1 240 55.0
BcaC03g17736 Brassica carinata HOM05D004086 ORTHO05D004641 7.3e-45 186.4 221 47.1
AL253U10010 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 5.2e-43 180.3 198 51.5
A02p38220 Brassica napus HOM05D004086 ORTHO05D004641 2.0e-42 178.3 246 45.9
FAN24G1278 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.6e-39 168.7 469 31.8
Zm00001eb269010 Zea mays HOM05D004086 ORTHO05D004641 2.7e-39 167.9 238 44.5
CDE10G0302 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 4.6e-39 167.2 166 52.4
Cpa.g.sc353.1 Carica papaya HOM05D004086 ORTHO05D004641 3.0e-38 164.5 237 46.0
CARHR050710 Cardamine hirsuta HOM05D004086 ORTHO05D004641 3.9e-38 164.1 243 38.7
Haze_15116 Corylus avellana HOM05D004086 ORTHO05D004641 1.6e-36 158.7 262 42.4
CDE10G0017 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 5.8e-34 150.2 229 40.6
Oeu053017.4 Olea europaea HOM05D004086 ORTHO05D004641 1.3e-33 149.1 380 30.5
C02p57460 Brassica napus HOM05D004086 ORTHO05D004641 6.4e-33 146.7 221 41.2
CDE05G1436 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 5.1e-30 137.1 210 40.0
PSO017G0414 Papaver somniferum HOM05D004086 ORTHO05D004641 1.9e-29 135.2 448 26.8
PGSC0003DMG400012686 Solanum tuberosum HOM05D004086 ORTHO05D004641 6.2e-28 130.2 221 35.3
Zm00001eb269020 Zea mays HOM05D004086 ORTHO05D004641 1.5e-26 125.6 378 31.2
SEGI_33702 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 3.4e-26 124.4 338 31.7
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 9.9e-26 122.9 167 44.3
BcaB07g34160 Brassica carinata HOM05D004086 ORTHO05D004641 1.0e-22 112.8 122 50.8
Lj4A239T53 Lonicera japonica HOM05D004086 ORTHO05D004641 8.7e-22 109.8 130 44.6
SHI06750 Sapria himalayana HOM05D004086 ORTHO05D004641 5.6e-21 107.1 129 46.5
Oeu014919.1 Olea europaea HOM05D004086 ORTHO05D004641 2.1e-20 105.1 654 25.7
Sc17g0002700 Simmondsia chinensis HOM05D004086 ORTHO05D004641 3.6e-20 104.4 103 55.3
Glyma.01G232951 Glycine max HOM05D001514 ORTHO05D002956 4.8e-20 104.0 222 35.1
Oeu053007.1 Olea europaea HOM05D004086 ORTHO05D004641 6.2e-20 103.6 291 34.0
SHI06749 Sapria himalayana HOM05D004086 ORTHO05D004641 1.4e-19 102.4 85 57.6
Ah.15g091620 Amaranthus hybridus HOM05D004086 ORTHO05D004641 1.8e-19 102.1 103 54.4
BolC2t11821H Brassica oleracea HOM05D004086 ORTHO05D004641 7.6e-18 96.7 65 66.2
Gohir.A11G236200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 8.4e-17 93.2 95 52.6
SEGI_36884 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 7.1e-16 90.1 173 38.7
SEGI_29880 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 1.6e-15 89.0 80 57.5
SEGI_38277 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 7.8e-15 86.7 145 39.3
Cre10.g454650 Chlamydomonas reinhardtii HOM05D004086 ORTHO05D004641 3.0e-14 84.7 252 31.0
HPP92_026150 Vanilla planifolia HOM05D004086 ORTHO05D004641 2.1e-12 78.6 106 45.3
Ca_29956_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 4.8e-12 77.4 101 43.6
MELO3C034917.2 Cucumis melo HOM05D004086 ORTHO05D004641 3.1e-11 74.7 78 47.4
SEGI_37045 Sequoiadendron giganteum HOM05D037714 ORTHO05D004641 3.1e-11 74.7 136 34.6
CARHR050700 Cardamine hirsuta HOM05D004086 ORTHO05D004641 7.6e-10 70.1 65 53.8
Zm00001eb176250 Zea mays HOM05D004086 ORTHO05D004641 1.3e-09 69.3 148 34.5
MCO01G289 Micromonas commoda HOM05D004086 ORTHO05D004641 1.7e-09 68.9 615 22.1
HPP92_015986 Vanilla planifolia HOM05D004086 ORTHO05D004641 2.1e-07 62.0 74 40.5


User provided reference genes

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