Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra07G0021700 Salix brachista HOM05D004733 ORTHO05D005925 0.0e+00 2128.6 1053 100.0
Potri.007G024600 Populus trichocarpa HOM05D004733 ORTHO05D005925 0.0e+00 1796.6 1101 83.6
Manes.02G094400 Manihot esculenta HOM05D004733 ORTHO05D005925 0.0e+00 1489.6 1102 68.8
TWI77G0475 Tripterygium wilfordii HOM05D004733 ORTHO05D005925 0.0e+00 1400.6 1053 65.9
CiPaw.02G018200 Carya illinoinensis HOM05D004733 ORTHO05D005925 0.0e+00 1395.2 1095 64.4
QL04p047829 Quercus lobata HOM05D004733 ORTHO05D005925 0.0e+00 1388.6 1100 65.1
Atru.chr3.583 Acer truncatum HOM05D004733 ORTHO05D005925 0.0e+00 1384.8 1099 63.8
Ciclev10024776m.g Citrus clementina HOM05D004733 ORTHO05D005925 0.0e+00 1378.6 1105 63.7
GSVIVG01018952001 Vitis vinifera HOM05D004733 ORTHO05D005925 0.0e+00 1374.4 1113 63.4
Cfa004311 Carpinus fangiana HOM05D004733 ORTHO05D005925 0.0e+00 1346.6 1096 62.0
CSS0026274 Camellia sinensis var. sinensis HOM05D004733 ORTHO05D005925 0.0e+00 1342.8 1106 61.6
Thecc.01G034700 Theobroma cacao HOM05D004733 ORTHO05D005925 0.0e+00 1342.4 1102 62.1
Actinidia36563 Actinidia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1341.3 1107 61.2
Gohir.D11G190600 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1341.3 1103 62.3
Gohir.A11G184100 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1332.8 1103 62.3
Gorai.007G203100 Gossypium raimondii HOM05D004733 ORTHO05D005925 0.0e+00 1331.2 1110 61.8
Prupe.7G155300 Prunus persica HOM05D004733 ORTHO05D005925 0.0e+00 1324.7 1078 61.9
Nn5g29624 Nelumbo nucifera HOM05D004733 ORTHO05D005925 0.0e+00 1324.3 1099 60.5
Duzib187G1802 Durio zibethinus HOM05D004733 ORTHO05D005925 0.0e+00 1323.9 1099 60.9
MD02G1146900 Malus domestica HOM05D004733 ORTHO05D005925 0.0e+00 1312.7 1104 60.5
FvH4_1g13250 Fragaria vesca HOM05D004733 ORTHO05D005925 0.0e+00 1308.5 1090 60.6
Glyma.11G068600 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1305.4 1103 59.4
CANSAT78G0304 Cannabis sativa HOM05D004733 ORTHO05D005925 0.0e+00 1302.7 1090 60.6
Hma1.2p1_0789F.1_g218380 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 0.0e+00 1298.5 1071 62.1
RcHm_v2.0_Chr2g0101431 Rosa chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1294.6 1090 59.5
PGR119G1063 Punica granatum HOM05D004733 ORTHO05D005925 0.0e+00 1292.3 1102 59.2
THA.LOC104809497 Tarenaya hassleriana HOM05D004733 ORTHO05D005925 0.0e+00 1290.8 1102 60.0
Glyma.01G176400 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1290.4 1105 59.2
Lalb_Chr16g0377811 Lupinus albus HOM05D004733 ORTHO05D005925 0.0e+00 1284.6 1093 59.1
Lj1g0005862 Lotus japonicus HOM05D004733 ORTHO05D005925 0.0e+00 1283.5 1092 59.3
AUR62004057 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1276.2 1097 59.6
Rhsim02G0060300 Rhododendron simsii HOM05D004733 ORTHO05D005925 0.0e+00 1275.4 1171 56.4
arahy.Tifrunner.gnm1.ann1.6U5FTL Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1273.5 1099 58.0
arahy.Tifrunner.gnm1.ann1.VZ5KK1 Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1271.5 1104 58.2
arahy.Tifrunner.gnm1.ann1.VB3WEH Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1271.1 1108 57.9
Hund16432 Selenicereus undatus HOM05D004733 ORTHO05D005925 0.0e+00 1269.6 1135 58.2
FAN19G0915 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1266.5 1090 59.3
Aqoxy6G01122 Aquilegia oxysepala HOM05D004733 ORTHO05D005925 0.0e+00 1266.1 1098 58.7
Ca_24849_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 0.0e+00 1262.3 1070 59.5
Psat2g159520 Pisum sativum HOM05D004733 ORTHO05D005925 0.0e+00 1260.7 1097 58.3
Sed0013525 Sechium edule HOM05D004733 ORTHO05D005925 0.0e+00 1260.4 1103 58.3
MELO3C022270.2 Cucumis melo HOM05D004733 ORTHO05D005925 0.0e+00 1250.7 1105 58.0
Dinv39990 Davidia involucrata HOM05D004733 ORTHO05D005925 0.0e+00 1250.7 1110 59.7
AL2G11330 Arabidopsis lyrata HOM05D004733 ORTHO05D005925 0.0e+00 1250.0 1099 58.2
Phvul.002G030700 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1250.0 1098 58.2
Carub.0002s0104 Capsella rubella HOM05D004733 ORTHO05D005925 0.0e+00 1247.3 1099 57.8
Medtr5g020190 Medicago truncatula HOM05D004733 ORTHO05D005925 0.0e+00 1246.9 1099 58.1
AUR62007571 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1246.5 1130 57.1
CsaV3_5G036970 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1246.5 1104 57.6
Thhalv10024292m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 0.0e+00 1244.6 1099 58.1
Cpa.g.sc6.117 Carica papaya HOM05D004733 ORTHO05D005925 0.0e+00 1239.2 1117 58.6
COL.COLO4_08906 Corchorus olitorius HOM05D004733 ORTHO05D005925 0.0e+00 1238.8 1131 57.2
CsaV3_6G008550 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1237.6 1095 57.6
VMungo1215G0507 Vigna mungo HOM05D004733 ORTHO05D005925 0.0e+00 1234.6 1102 56.7
Ah.03g140900 Amaranthus hybridus HOM05D004733 ORTHO05D005925 0.0e+00 1233.4 1094 57.0
Sp7g34280 Schrenkiella parvula HOM05D004733 ORTHO05D005925 0.0e+00 1232.2 1099 57.2
EL10Ac6g15557 Beta vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1228.8 1129 56.8
Sc03g0003000 Simmondsia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1224.2 1062 57.9
AT1G63810 Arabidopsis thaliana HOM05D004733 ORTHO05D005925 0.0e+00 1221.1 1103 57.3
ClCG06G002580 Citrullus lanatus HOM05D004733 ORTHO05D005925 0.0e+00 1218.0 1115 56.9
BolC3t20259H Brassica oleracea HOM05D004733 ORTHO05D005925 0.0e+00 1212.6 1100 56.5
CARHR047390 Cardamine hirsuta HOM05D004733 ORTHO05D005925 0.0e+00 1211.4 1102 56.5
Cc03_g11520 Coffea canephora HOM05D004733 ORTHO05D005925 0.0e+00 1211.1 1109 56.5
FAN23G1660 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1211.1 1089 57.1
C03p80050 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1208.4 1100 56.5
PSO541G3573 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1203.7 1110 56.8
A08p22270 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1199.9 1100 55.9
BraA08t34186Z Brassica rapa HOM05D004733 ORTHO05D005925 0.0e+00 1199.1 1100 55.9
Oeu017201.1 Olea europaea HOM05D004733 ORTHO05D005925 0.0e+00 1196.4 1123 55.4
PSO675G5282 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1194.1 1110 56.4
Migut.H00986 Erythranthe guttata HOM05D004733 ORTHO05D005925 0.0e+00 1193.3 1103 55.8
MSTRG.23523 Avicennia marina HOM05D004733 ORTHO05D005925 0.0e+00 1169.8 1093 55.1
FAN28G2014 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1161.7 1094 55.6
SalBow2G0826 Salvia bowleyana HOM05D004733 ORTHO05D005925 0.0e+00 1149.8 1094 53.8
Lj4A201T52 Lonicera japonica HOM05D004733 ORTHO05D005925 0.0e+00 1142.5 1181 51.7
TAR625G0290 Trochodendron aralioides HOM05D004733 ORTHO05D005925 0.0e+00 1135.9 1079 55.8
HanXRQChr09g0261511 Helianthus annuus HOM05D004733 ORTHO05D005925 0.0e+00 1133.2 1093 53.7
Solyc02g085230.3 Solanum lycopersicum HOM05D004733 ORTHO05D005925 0.0e+00 1124.8 1103 53.3
Sopen02g029930 Solanum pennellii HOM05D004733 ORTHO05D005925 0.0e+00 1121.3 1103 53.0
ECA232G2226 Erigeron canadensis HOM05D004733 ORTHO05D005925 0.0e+00 1106.3 1080 52.9
BcaC01g00457 Brassica carinata HOM05D004733 ORTHO05D005925 0.0e+00 1101.7 1099 53.0
vmacro15553 Vaccinium macrocarpon HOM05D004733 ORTHO05D005925 0.0e+00 1099.0 1220 49.9
Lsat_1_v5_gn_4_152020 Lactuca sativa HOM05D004733 ORTHO05D005925 0.0e+00 1082.4 1091 52.5
Nitab4.5_0001385g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 1.4e-311 1073.2 1116 51.0
Peaxi162Scf00366g00125 Petunia axillaris HOM05D004733 ORTHO05D005925 4.2e-310 1068.1 1097 51.0
Eucgr.I02440 Eucalyptus grandis HOM05D004733 ORTHO05D005925 6.7e-308 1060.8 897 60.4
ATR0665G204 Amborella trichopoda HOM05D004733 ORTHO05D005925 1.8e-305 1052.7 1094 50.4
Nitab4.5_0000178g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 1.8e-300 1036.2 1190 47.5
Zm00001eb139270 Zea mays HOM05D004733 ORTHO05D005925 3.0e-300 1035.4 1097 50.0
CDE02G4373 Ceratophyllum demersum HOM05D004733 ORTHO05D005925 7.4e-283 977.6 1084 49.1
DCAR_017293 Daucus carota HOM05D004733 ORTHO05D005925 2.6e-272 942.6 1100 47.3
MBI14_g08060_MAGBIO Magnolia biondii HOM05D004733 ORTHO05D005925 1.9e-270 936.4 909 54.0
TPR.G22288 Trifolium pratense HOM05D004733 ORTHO05D005925 6.5e-255 884.8 686 64.6
SEGI_35015 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 8.3e-250 867.8 1064 44.8
A05p29760 Brassica napus HOM05D004733 ORTHO05D005925 2.9e-247 859.4 948 50.9
Haze_15084 Corylus avellana HOM05D004733 ORTHO05D005925 3.1e-228 796.2 930 48.0
unitig_21.g20953 Utricularia gibba HOM05D004733 ORTHO05D005925 1.6e-221 773.9 1103 41.6
Pp3c6_25920 Physcomitrium patens HOM05D004733 ORTHO05D005925 2.3e-207 726.9 1107 38.0
CAN.G358.87 Capsicum annuum HOM05D004733 ORTHO05D005925 2.3e-191 673.7 740 49.1
CAN.G3433.1 Capsicum annuum HOM05D004733 ORTHO05D005925 2.8e-189 666.8 706 50.0
MD15G1261100 Malus domestica HOM05D004733 ORTHO05D005925 5.8e-187 659.1 500 65.0
Hma1.2p1_0789F.1_g218390 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 1.6e-184 651.0 549 59.6
HPP92_009474 Vanilla planifolia HOM05D004733 ORTHO05D005925 1.4e-177 627.9 858 43.1
SEGI_33720 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 2.3e-175 620.5 675 47.9
QL06p046231 Quercus lobata HOM05D004733 ORTHO05D005925 1.4e-172 611.3 410 73.2
A05p29530 Brassica napus HOM05D004733 ORTHO05D005925 1.0e-170 605.1 760 46.7
Mapoly0060s0020 Marchantia polymorpha HOM05D004733 ORTHO05D005925 9.7e-166 588.6 876 38.6
BcaNung05455 Brassica carinata HOM05D004733 ORTHO05D005925 4.5e-163 579.7 554 54.2
SHI09115 Sapria himalayana HOM05D004733 ORTHO05D005925 2.6e-158 563.9 562 54.3
CBR_g37736 Chara braunii HOM05D004733 ORTHO05D000048 1.3e-154 551.6 1057 34.1
SGA_v2.0_scaffold54G19532 Striga asiatica HOM05D004733 ORTHO05D005925 2.5e-153 547.4 713 43.2
AagrBONN_evm.TU.Sc2ySwM_228.918 Anthoceros agrestis HOM05D004733 ORTHO05D005925 9.4e-153 545.4 908 35.7
SMO347G0575 Selaginella moellendorffii HOM05D004733 ORTHO05D005925 1.4e-151 541.6 1093 35.1
RcHm_v2.0_Chr2g0101471 Rosa chinensis HOM05D004733 ORTHO05D005925 5.7e-150 536.2 384 66.9
Aa31LG3G3780 Aethionema arabicum HOM05D004733 ORTHO05D005925 8.5e-146 522.3 565 49.6
QL02p065465 Quercus lobata HOM05D004733 ORTHO05D005925 1.6e-136 491.5 437 60.2
Aa31LG3G3760 Aethionema arabicum HOM05D004733 ORTHO05D005925 1.7e-130 471.5 357 64.4
Os12g0166500 Oryza sativa ssp. japonica HOM05D004733 ORTHO05D005925 5.2e-111 406.8 480 45.6
MCO15G114 Micromonas commoda HOM05D004733 ORTHO05D005925 1.5e-105 388.7 896 30.6
CAN.G358.91 Capsicum annuum HOM05D004733 ORTHO05D005925 7.1e-100 369.8 317 58.4
TPR.G8389 Trifolium pratense HOM05D004733 ORTHO05D005925 1.4e-95 355.5 383 48.0
Cre07.g332800 Chlamydomonas reinhardtii HOM05D004733 ORTHO05D005925 3.4e-86 324.3 1170 27.0
Hma1.2p1_0400F.1_g144360 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 4.8e-80 303.9 263 59.3
Actinidia12125 Actinidia chinensis HOM05D004733 ORTHO05D005925 5.5e-76 290.4 220 63.6
GSVIVG01024291001 Vitis vinifera HOM05D004733 ORTHO05D005925 3.8e-69 267.7 177 72.3
Ca_24844_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 3.0e-66 258.1 285 47.7
A05p29770 Brassica napus HOM05D004733 ORTHO05D005925 1.5e-65 255.8 285 50.5
CAN.G358.90 Capsicum annuum HOM05D004733 ORTHO05D005925 2.1e-64 251.9 231 51.9
C07p61790 Brassica napus HOM05D004733 ORTHO05D005925 3.8e-61 241.1 310 47.1
Cfa025732 Carpinus fangiana HOM05D004733 ORTHO05D005925 8.5e-61 240.0 1028 26.4
HPP92_009475 Vanilla planifolia HOM05D004733 ORTHO05D005925 6.1e-59 233.8 210 53.3
arahy.Tifrunner.gnm1.ann1.VLQ9MW Arachis hypogaea HOM05D004733 ORTHO05D005925 1.9e-57 228.8 249 48.2
Thhalv10021392m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 1.8e-55 222.2 330 40.6
PRCOL_00003562 Prasinoderma coloniale HOM05D004733 ORTHO05D005925 7.9e-51 206.8 1220 23.1
arahy.Tifrunner.gnm1.ann1.T3TR42 Arachis hypogaea HOM05D004733 ORTHO05D005925 1.8e-50 205.7 480 30.4
Phvul.011G118815 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 2.0e-49 202.2 163 58.9
QL02p065474 Quercus lobata HOM05D004733 ORTHO05D005925 4.4e-49 201.1 126 77.0
A05p29560 Brassica napus HOM05D004733 ORTHO05D005925 3.1e-47 194.9 228 48.2
C07p61800 Brassica napus HOM05D004733 ORTHO05D005925 2.0e-38 165.6 335 31.6
Aa31LG3G3770 Aethionema arabicum HOM05D004733 ORTHO05D005925 1.6e-35 156.0 113 71.7
AagrBONN_evm.TU.Sc2ySwM_228.917 Anthoceros agrestis HOM05D004733 ORTHO05D005925 8.8e-34 150.2 187 43.3
QL06p046242 Quercus lobata HOM05D004733 ORTHO05D005925 2.2e-32 145.6 100 67.0
TPR.G23227 Trifolium pratense HOM05D004733 ORTHO05D006027 1.6e-30 139.4 87 75.9
QL06p046224 Quercus lobata HOM05D004733 ORTHO05D005925 1.3e-29 136.3 110 57.3
Psat4g132320 Pisum sativum HOM05D004733 ORTHO05D010533 6.5e-29 134.0 154 48.1
Medtr1g110810 Medicago truncatula HOM05D004733 ORTHO05D005925 1.9e-28 132.5 159 46.5
Haze_15083 Corylus avellana HOM05D004733 ORTHO05D005925 7.2e-28 130.6 106 61.3
TPR.G36480 Trifolium pratense HOM05D004733 ORTHO05D008348 2.0e-25 122.5 71 74.6
RcHm_v2.0_Chr5g0064711 Rosa chinensis HOM05D004733 ORTHO05D005925 3.2e-20 105.1 94 54.3
arahy.Tifrunner.gnm1.ann1.1JA7FP Arachis hypogaea HOM05D004733 ORTHO05D005925 8.0e-19 100.5 70 67.1
Lj1g0009863 Lotus japonicus HOM05D004733 ORTHO05D001264 5.7e-17 94.4 70 65.7
Cc03_g11510 Coffea canephora HOM05D004733 ORTHO05D005925 2.4e-15 89.0 93 46.2
Phvul.011G118830 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 3.1e-15 88.6 128 43.8
C05p48270 Brassica napus HOM05D004733 ORTHO05D005925 7.0e-15 87.4 107 43.9
Psat2g060920 Pisum sativum HOM05D001085 ORTHO05D000895 5.2e-10 71.2 56 60.7
A05p29540 Brassica napus HOM05D004733 ORTHO05D005925 4.9e-08 64.7 79 45.6


User provided reference genes

Program Settings