Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra07G0019500 Salix brachista HOM05D003805 ORTHO05D004300 2.3e-54 215.3 108 100.0
Potri.007G022300 Populus trichocarpa HOM05D003805 ORTHO05D004300 4.3e-53 211.1 108 97.2
Potri.007G022200 Populus trichocarpa HOM05D003805 ORTHO05D004300 5.3e-27 124.4 110 62.7
COL.COLO4_22043 Corchorus olitorius HOM05D003805 ORTHO05D004300 1.3e-25 119.8 114 60.5
QL06p047086 Quercus lobata HOM05D003805 ORTHO05D004300 2.2e-25 119.0 109 60.6
Thecc.01G031800 Theobroma cacao HOM05D003805 ORTHO05D004300 1.9e-24 115.9 119 57.1
Sabra07G0019300 Salix brachista HOM05D003805 ORTHO05D004300 2.5e-24 115.5 109 59.6
Duzib264G0487 Durio zibethinus HOM05D003805 ORTHO05D004300 3.2e-24 115.2 117 58.1
GSVIVG01018926001 Vitis vinifera HOM05D003805 ORTHO05D004300 9.4e-24 113.6 106 55.7
Gohir.A12G063700 Gossypium hirsutum HOM05D003805 ORTHO05D004300 3.9e-22 108.2 121 56.2
Haze_15065 Corylus avellana HOM05D000625 ORTHO05D010258 6.7e-22 107.5 104 58.7
Gohir.D12G063500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 8.8e-22 107.1 121 55.4
Gorai.008G066800 Gossypium raimondii HOM05D003805 ORTHO05D004300 8.8e-22 107.1 121 55.4
PGR119G0937 Punica granatum HOM05D003805 ORTHO05D004300 1.5e-21 106.3 112 56.2
Duzib147G0407 Durio zibethinus HOM05D003805 ORTHO05D004300 4.4e-21 104.8 118 55.9
Sed0017680 Sechium edule HOM05D003805 ORTHO05D004300 7.4e-21 104.0 106 54.7
Cpa.g.sc6.148 Carica papaya HOM05D003805 ORTHO05D004300 2.2e-20 102.4 127 50.4
CsaV3_6G046430 Cucumis sativus L. HOM05D003805 ORTHO05D004300 1.1e-19 100.1 108 54.6
MELO3C007840.2 Cucumis melo HOM05D003805 ORTHO05D004300 2.4e-19 99.0 108 52.8
Hma1.2p1_1297F.1_g274110 Hydrangea macrophylla HOM05D003805 ORTHO05D004300 3.1e-19 98.6 108 54.6
TWI09G1369 Tripterygium wilfordii HOM05D003805 ORTHO05D004300 3.1e-19 98.6 109 53.2
Gohir.A11G183100 Gossypium hirsutum HOM05D003805 ORTHO05D004300 5.3e-19 97.8 113 50.4
Gorai.007G201700 Gossypium raimondii HOM05D003805 ORTHO05D004300 5.3e-19 97.8 118 52.5
Gohir.D11G189500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 6.9e-19 97.4 116 52.6
PGSC0003DMG400003519 Solanum tuberosum HOM05D003805 ORTHO05D004300 6.9e-19 97.4 105 47.6
Sed0008243 Sechium edule HOM05D003805 ORTHO05D004300 9.1e-19 97.1 107 53.3
CSS0002171 Camellia sinensis var. sinensis HOM05D003805 ORTHO05D004300 3.4e-18 95.1 110 54.5
VMungo0251G0164 Vigna mungo HOM05D003805 ORTHO05D004300 5.9e-18 94.4 110 50.0
Aa31LG4G19000 Aethionema arabicum HOM05D003805 ORTHO05D004300 1.0e-17 93.6 116 50.9
CAN.G358.54 Capsicum annuum HOM05D003805 ORTHO05D004300 1.0e-17 93.6 105 47.6
HanXRQChr07g0191651 Helianthus annuus HOM05D003805 ORTHO05D004300 1.0e-17 93.6 107 44.9
VMungo0251G1302 Vigna mungo HOM05D003805 ORTHO05D004300 1.0e-17 93.6 108 48.1
Nitab4.5_0012261g0010 Nicotiana tabacum HOM05D003805 ORTHO05D004300 1.3e-17 93.2 106 51.9
Phvul.003G255300 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 1.3e-17 93.2 110 49.1
DCAR_016030 Daucus carota HOM05D003805 ORTHO05D004300 3.8e-17 91.7 118 47.5
ECA238G4264 Erigeron canadensis HOM05D003805 ORTHO05D004300 5.0e-17 91.3 111 45.0
Oeu035340.1 Olea europaea HOM05D003805 ORTHO05D004300 5.0e-17 91.3 109 48.6
Manes.01G137700 Manihot esculenta HOM05D003805 ORTHO05D004300 8.5e-17 90.5 122 45.1
Sopen02g029690 Solanum pennellii HOM05D003805 ORTHO05D004300 1.1e-16 90.1 109 48.6
Phvul.003G255400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 1.9e-16 89.4 108 47.2
arahy.Tifrunner.gnm1.ann1.IAMR94 Arachis hypogaea HOM05D003805 ORTHO05D004300 3.2e-16 88.6 115 42.6
HanXRQChr14g0440581 Helianthus annuus HOM05D003805 ORTHO05D004300 3.2e-16 88.6 109 45.9
Solyc02g085005.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 4.2e-16 88.2 105 48.6
SGA_v2.0_scaffold12G06299 Striga asiatica HOM05D003805 ORTHO05D004300 4.2e-16 88.2 108 48.1
Medtr8g077145 Medicago truncatula HOM05D003805 ORTHO05D004300 5.5e-16 87.8 111 43.2
Nitab4.5_0007490g0050 Nicotiana tabacum HOM05D003805 ORTHO05D004300 5.5e-16 87.8 107 48.6
THA.LOC104826691 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 5.5e-16 87.8 116 44.8
Nitab4.5_0000178g0280 Nicotiana tabacum HOM05D003805 ORTHO05D004300 7.2e-16 87.4 105 47.6
Nitab4.5_0000178g0350 Nicotiana tabacum HOM05D003805 ORTHO05D004300 7.2e-16 87.4 107 48.6
Dinv40009 Davidia involucrata HOM05D002962 ORTHO05D004300 9.4e-16 87.0 108 52.8
Psat4g094760 Pisum sativum HOM05D003805 ORTHO05D004300 9.4e-16 87.0 110 45.5
THA.LOC104819775 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 1.2e-15 86.7 119 45.4
Ca_22293_v3 Cicer arietinum L. HOM05D003805 ORTHO05D004300 1.6e-15 86.3 113 45.1
Glyma.02G055000 Glycine max HOM05D003805 ORTHO05D004300 1.6e-15 86.3 108 46.3
BcaB01g00567 Brassica carinata HOM05D003805 ORTHO05D004300 2.1e-15 85.9 113 44.2
Manes.02G096100 Manihot esculenta HOM05D003805 ORTHO05D004300 2.1e-15 85.9 108 51.9
AL5G31260 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 2.7e-15 85.5 116 44.8
AT3G50900 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 2.7e-15 85.5 116 44.8
THA.LOC104807465 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 2.7e-15 85.5 112 50.0
TAR247G0001 Trochodendron aralioides HOM05D003805 ORTHO05D004300 2.7e-15 85.5 109 47.7
Glyma.02G054900 Glycine max HOM05D003805 ORTHO05D004300 3.6e-15 85.1 111 45.9
Peaxi162Scf00366g00711 Petunia axillaris HOM05D003805 ORTHO05D004300 3.6e-15 85.1 106 48.1
TPR.G24102 Trifolium pratense HOM05D003805 ORTHO05D004300 3.6e-15 85.1 111 42.3
CARHR160470 Cardamine hirsuta HOM05D003805 ORTHO05D004300 4.7e-15 84.7 116 44.0
Thhalv10010834m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 4.7e-15 84.7 116 41.4
Glyma.01G172100 Glycine max HOM05D003805 ORTHO05D004300 4.7e-15 84.7 106 47.2
Psat4g094720 Pisum sativum HOM05D003805 ORTHO05D004300 6.1e-15 84.3 110 44.5
BcaC07g39558 Brassica carinata HOM05D003805 ORTHO05D004300 8.0e-15 84.0 114 44.7
A09p44010 Brassica napus HOM05D003805 ORTHO05D004300 8.0e-15 84.0 114 44.7
C08p26110 Brassica napus HOM05D003805 ORTHO05D004300 8.0e-15 84.0 114 44.7
BolC8t50229H Brassica oleracea HOM05D003805 ORTHO05D004300 8.0e-15 84.0 114 44.7
BraA09t39859Z Brassica rapa HOM05D003805 ORTHO05D004300 8.0e-15 84.0 114 44.7
Glyma.11G071100 Glycine max HOM05D003805 ORTHO05D004300 8.0e-15 84.0 107 46.7
Psat4g094680 Pisum sativum HOM05D003805 ORTHO05D004300 1.0e-14 83.6 110 43.6
Peaxi162Scf00366g00066 Petunia axillaris HOM05D003805 ORTHO05D004300 1.4e-14 83.2 107 47.7
Lsat_1_v5_gn_2_77320 Lactuca sativa HOM05D003805 ORTHO05D004300 1.8e-14 82.8 109 44.0
Actinidia19196 Actinidia chinensis HOM05D002962 ORTHO05D003280 2.3e-14 82.4 105 46.7
Lsat_1_v5_gn_2_77300 Lactuca sativa HOM05D003805 ORTHO05D004300 2.3e-14 82.4 109 40.4
Oeu025181.1 Olea europaea HOM05D003805 ORTHO05D004300 3.0e-14 82.0 111 44.1
SGA_v2.0_scaffold51G18830 Striga asiatica HOM05D003805 ORTHO05D004300 3.0e-14 82.0 105 46.7
Lj4g0028115 Lotus japonicus HOM05D003805 ORTHO05D004300 3.9e-14 81.6 110 45.5
Peaxi162Scf00366g00073 Petunia axillaris HOM05D003805 ORTHO05D004300 3.9e-14 81.6 108 44.4
TPR.G24112 Trifolium pratense HOM05D003805 ORTHO05D004300 3.9e-14 81.6 112 42.9
Carub.0007s0382 Capsella rubella HOM05D003805 ORTHO05D004300 5.2e-14 81.3 112 44.6
Aa31LG6G13290 Aethionema arabicum HOM05D003805 ORTHO05D004300 8.8e-14 80.5 113 46.9
Ah.03g141100 Amaranthus hybridus HOM05D003805 ORTHO05D004300 8.8e-14 80.5 121 42.1
Lj4g0007128 Lotus japonicus HOM05D003805 ORTHO05D004300 8.8e-14 80.5 110 44.5
Solyc02g085010.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 8.8e-14 80.5 112 46.4
SalBow8G4897 Salvia bowleyana HOM05D003805 ORTHO05D004300 1.1e-13 80.1 106 43.4
AL7G14560 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 1.5e-13 79.7 112 42.9
A01p23830 Brassica napus HOM05D003805 ORTHO05D004300 1.5e-13 79.7 115 41.7
BraA01t02291Z Brassica rapa HOM05D003805 ORTHO05D004300 1.5e-13 79.7 115 41.7
Lalb_Chr09g0333461 Lupinus albus HOM05D003805 ORTHO05D004300 1.5e-13 79.7 108 41.7
AT4G36500 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 2.0e-13 79.3 112 43.8
Phvul.002G032400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 2.0e-13 79.3 107 44.9
Sc16g0002610 Simmondsia chinensis HOM05D003805 ORTHO05D004300 2.0e-13 79.3 117 47.9
VMungo1215G0776 Vigna mungo HOM05D003805 ORTHO05D004300 2.0e-13 79.3 107 44.9
Lj4g0009905 Lotus japonicus HOM05D003805 ORTHO05D004300 2.6e-13 79.0 110 43.6
Lalb_Chr09g0322201 Lupinus albus HOM05D003805 ORTHO05D004300 3.3e-13 78.6 110 41.8
A03p48010 Brassica napus HOM05D003805 ORTHO05D004300 4.4e-13 78.2 113 44.2
CARHR244820 Cardamine hirsuta HOM05D003805 ORTHO05D004300 7.4e-13 77.4 112 42.9
Lalb_Chr16g0391061 Lupinus albus HOM05D003805 ORTHO05D004300 9.7e-13 77.0 106 42.5
C01p02570 Brassica napus HOM05D003805 ORTHO05D004300 1.3e-12 76.6 113 44.2
C07p46020 Brassica napus HOM05D003805 ORTHO05D004300 1.3e-12 76.6 113 43.4
C07p61730 Brassica napus HOM05D003805 ORTHO05D004300 1.3e-12 76.6 112 41.1
BolC7t46598H Brassica oleracea HOM05D003805 ORTHO05D004300 1.3e-12 76.6 112 41.1
Carub.0005s1729 Capsella rubella HOM05D003805 ORTHO05D004300 1.7e-12 76.3 119 39.5
Sp1g22390 Schrenkiella parvula HOM05D003805 ORTHO05D004300 1.7e-12 76.3 114 44.7
PGSC0003DMG401003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 1.7e-12 76.3 105 44.8
Sopen02g029700 Solanum pennellii HOM05D003805 ORTHO05D004300 2.2e-12 75.9 112 44.6
PGSC0003DMG400003518 Solanum tuberosum HOM05D003805 ORTHO05D004300 2.2e-12 75.9 105 44.8
BcaB03g12394 Brassica carinata HOM05D003805 ORTHO05D004300 2.8e-12 75.5 112 42.0
BcaB05g23252 Brassica carinata HOM05D003805 ORTHO05D004300 2.8e-12 75.5 116 42.2
A03p64280 Brassica napus HOM05D003805 ORTHO05D004300 2.8e-12 75.5 112 42.0
BraA03t15498Z Brassica rapa HOM05D003805 ORTHO05D004300 2.8e-12 75.5 112 42.0
BraA08t34177Z Brassica rapa HOM05D003805 ORTHO05D004300 2.8e-12 75.5 112 41.1
Thhalv10026576m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 2.8e-12 75.5 112 42.0
A08p22170 Brassica napus HOM05D003805 ORTHO05D004300 3.7e-12 75.1 112 41.1
BolC1t00245H Brassica oleracea HOM05D003805 ORTHO05D004300 3.7e-12 75.1 113 43.4
BolC7t45120H Brassica oleracea HOM05D003805 ORTHO05D004300 3.7e-12 75.1 120 42.5
PGSC0003DMG402003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 3.7e-12 75.1 101 41.6
BcaC09g50052 Brassica carinata HOM05D003805 ORTHO05D004300 6.3e-12 74.3 114 43.9
BcaNung00728 Brassica carinata HOM05D003805 ORTHO05D004300 6.3e-12 74.3 113 43.4
C01p29550 Brassica napus HOM05D003805 ORTHO05D004300 6.3e-12 74.3 114 43.9
BolC1t02898H Brassica oleracea HOM05D003805 ORTHO05D004300 6.3e-12 74.3 114 43.9
CARHR281260 Cardamine hirsuta HOM05D003805 ORTHO05D004300 6.3e-12 74.3 113 43.4
Glyma.16G135600 Glycine max HOM05D003805 ORTHO05D004300 8.2e-12 73.9 110 42.7
Sp7g34150 Schrenkiella parvula HOM05D003805 ORTHO05D004300 8.2e-12 73.9 112 41.1
A01p02360 Brassica napus HOM05D003805 ORTHO05D004300 1.1e-11 73.6 113 43.4
Carub.0003s3236 Capsella rubella HOM05D003805 ORTHO05D004300 1.1e-11 73.6 115 45.2
BcaC01g00464 Brassica carinata HOM05D003805 ORTHO05D004300 1.4e-11 73.2 112 40.2
C03p80150 Brassica napus HOM05D003805 ORTHO05D004300 1.4e-11 73.2 112 40.2
BolC3t20271H Brassica oleracea HOM05D003805 ORTHO05D004300 1.4e-11 73.2 112 40.2
AUR62004083 Chenopodium quinoa HOM05D000625 ORTHO05D000467 1.4e-11 73.2 84 50.0
BcaNung05311 Brassica carinata HOM05D003805 ORTHO05D004300 1.8e-11 72.8 113 42.5
Glyma.16G135400 Glycine max HOM05D003805 ORTHO05D004300 1.8e-11 72.8 106 43.4
Lj2g0025508 Lotus japonicus HOM05D003805 ORTHO05D004300 1.8e-11 72.8 108 40.7
AT2G18210 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 2.4e-11 72.4 115 44.3
BcaNung00729 Brassica carinata HOM05D003805 ORTHO05D004300 3.1e-11 72.0 113 42.5
C01p02580 Brassica napus HOM05D003805 ORTHO05D004300 3.1e-11 72.0 113 42.5
BolC1t00246H Brassica oleracea HOM05D003805 ORTHO05D004300 3.1e-11 72.0 113 42.5
Carub.0003s3237 Capsella rubella HOM05D003805 ORTHO05D004300 3.1e-11 72.0 115 44.3
Medtr5g020860 Medicago truncatula HOM05D003805 ORTHO05D004300 3.1e-11 72.0 113 38.9
A01p02370 Brassica napus HOM05D003805 ORTHO05D004300 4.1e-11 71.6 113 42.5
BraA01t00224Z Brassica rapa HOM05D003805 ORTHO05D004300 4.1e-11 71.6 111 43.2
BraA01t00225Z Brassica rapa HOM05D003805 ORTHO05D004300 4.1e-11 71.6 113 42.5
Sp2g30240 Schrenkiella parvula HOM05D003805 ORTHO05D004300 4.1e-11 71.6 116 42.2
BcaC06g33329 Brassica carinata HOM05D003805 ORTHO05D004300 5.3e-11 71.2 146 36.3
BcaNung05312 Brassica carinata HOM05D003805 ORTHO05D004300 5.3e-11 71.2 113 41.6
Sp7g34160 Schrenkiella parvula HOM05D003805 ORTHO05D004300 7.0e-11 70.9 113 40.7
BraA03t13909Z Brassica rapa HOM05D003805 ORTHO05D004300 1.6e-10 69.7 145 36.6
Lsat_1_v5_gn_2_77360 Lactuca sativa HOM05D003805 ORTHO05D004300 1.6e-10 69.7 105 39.0
BcaB02g10024 Brassica carinata HOM05D003805 ORTHO05D004300 2.6e-10 68.9 117 37.6
AL3G51440 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 3.5e-10 68.6 115 41.7
Migut.H02530 Erythranthe guttata HOM05D003805 ORTHO05D004300 3.5e-10 68.6 110 42.7
Atru.chr3.624 Acer truncatum HOM05D003805 ORTHO05D004300 4.5e-10 68.2 93 50.5
Lalb_Chr05g0212681 Lupinus albus HOM05D003805 ORTHO05D004300 4.5e-10 68.2 104 39.4
AT5G66490 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.0e-09 67.0 113 40.7
ECA238G1778 Erigeron canadensis HOM05D003805 ORTHO05D004300 1.3e-09 66.6 104 36.5
Thhalv10023197m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 1.3e-09 66.6 113 41.6
Thhalv10005334m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 2.9e-09 65.5 116 37.9
A07p17480 Brassica napus HOM05D000001 ORTHO05D010258 3.8e-09 65.1 122 36.1
Psat2g157880 Pisum sativum HOM05D003805 ORTHO05D004300 3.8e-09 65.1 114 38.6
TPR.G2362 Trifolium pratense HOM05D003805 ORTHO05D004300 3.8e-09 65.1 110 39.1
AL8G45040 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 5.0e-09 64.7 115 40.9
Nn5g29663 Nelumbo nucifera HOM05D003805 ORTHO05D004300 6.5e-09 64.3 102 38.2
Sc03g0003120 Simmondsia chinensis HOM05D003805 ORTHO05D004300 1.1e-08 63.5 124 34.7
BcaC06g34708 Brassica carinata HOM05D003805 ORTHO05D004300 3.2e-08 62.0 119 36.1
C07p25410 Brassica napus HOM05D000001 ORTHO05D010258 3.2e-08 62.0 119 36.1
BolC7t43064H Brassica oleracea HOM05D000001 ORTHO05D010258 3.2e-08 62.0 119 36.1
Aa31LG1G15010 Aethionema arabicum HOM05D003805 ORTHO05D004300 1.6e-07 59.7 114 36.0
BraA07t29468Z Brassica rapa HOM05D000001 ORTHO05D010258 2.7e-07 58.9 121 34.7
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 2.7e-07 58.9 104 38.5
BcaC06g33070 Brassica carinata HOM05D003805 ORTHO05D004300 3.6e-07 58.5 179 30.2
unitig_0.g473 Utricularia gibba HOM05D003805 ORTHO05D004300 3.6e-07 58.5 110 39.1
BcaC06g33330 Brassica carinata HOM05D003805 ORTHO05D004300 8.0e-07 57.4 148 32.4
Lsat_1_v5_gn_8_64500 Lactuca sativa HOM05D003805 ORTHO05D004300 1.4e-06 56.6 39 71.8
MBI10_g06731_MAGBIO Magnolia biondii HOM05D003805 ORTHO05D004300 1.4e-06 56.6 116 37.9
Nn1g04930 Nelumbo nucifera HOM05D003805 ORTHO05D004300 2.3e-06 55.8 41 58.5


User provided reference genes

Program Settings