Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra07G0019300 Salix brachista HOM05D003805 ORTHO05D004300 4.5e-82 307.8 144 100.0
Potri.007G022200 Populus trichocarpa HOM05D003805 ORTHO05D004300 1.0e-41 173.7 109 78.9
Sabra07G0019500 Salix brachista HOM05D003805 ORTHO05D004300 4.3e-24 115.2 109 59.6
Potri.007G022300 Populus trichocarpa HOM05D003805 ORTHO05D004300 3.6e-23 112.1 109 58.7
QL06p047086 Quercus lobata HOM05D003805 ORTHO05D004300 2.1e-15 86.3 110 50.9
Haze_15065 Corylus avellana HOM05D000625 ORTHO05D010258 6.2e-15 84.7 106 52.8
Phvul.003G255300 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 6.9e-14 81.3 110 45.5
VMungo0251G1302 Vigna mungo HOM05D003805 ORTHO05D004300 6.9e-14 81.3 110 45.5
VMungo1215G0776 Vigna mungo HOM05D003805 ORTHO05D004300 1.2e-13 80.5 108 43.5
Sed0017680 Sechium edule HOM05D003805 ORTHO05D004300 1.5e-13 80.1 109 48.6
VMungo0251G0164 Vigna mungo HOM05D003805 ORTHO05D004300 2.6e-13 79.3 110 44.5
PGR119G0937 Punica granatum HOM05D003805 ORTHO05D004300 3.4e-13 79.0 112 44.6
Phvul.003G255400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 7.6e-13 77.8 110 44.5
arahy.Tifrunner.gnm1.ann1.IAMR94 Arachis hypogaea HOM05D003805 ORTHO05D004300 1.3e-12 77.0 117 41.0
GSVIVG01018926001 Vitis vinifera HOM05D003805 ORTHO05D004300 1.7e-12 76.6 111 45.0
Medtr8g077145 Medicago truncatula HOM05D003805 ORTHO05D004300 3.8e-12 75.5 114 44.7
CsaV3_6G046430 Cucumis sativus L. HOM05D003805 ORTHO05D004300 4.9e-12 75.1 111 45.9
Glyma.11G071100 Glycine max HOM05D003805 ORTHO05D004300 4.9e-12 75.1 108 42.6
Gohir.A12G063700 Gossypium hirsutum HOM05D003805 ORTHO05D004300 4.9e-12 75.1 121 43.0
Phvul.002G032400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 4.9e-12 75.1 108 40.7
Psat4g094760 Pisum sativum HOM05D003805 ORTHO05D004300 4.9e-12 75.1 111 41.4
Psat4g094720 Pisum sativum HOM05D003805 ORTHO05D004300 6.4e-12 74.7 113 43.4
Hma1.2p1_1297F.1_g274110 Hydrangea macrophylla HOM05D003805 ORTHO05D004300 8.4e-12 74.3 110 43.6
Ca_22293_v3 Cicer arietinum L. HOM05D003805 ORTHO05D004300 1.1e-11 73.9 113 41.6
COL.COLO4_22043 Corchorus olitorius HOM05D003805 ORTHO05D004300 1.1e-11 73.9 115 40.9
Glyma.01G172100 Glycine max HOM05D003805 ORTHO05D004300 1.1e-11 73.9 100 45.0
Psat4g094680 Pisum sativum HOM05D003805 ORTHO05D004300 1.4e-11 73.6 113 41.6
MELO3C007840.2 Cucumis melo HOM05D003805 ORTHO05D004300 1.9e-11 73.2 111 45.0
Gohir.D12G063500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.9e-11 73.2 121 42.1
Gorai.008G066800 Gossypium raimondii HOM05D003805 ORTHO05D004300 1.9e-11 73.2 121 42.1
TPR.G24112 Trifolium pratense HOM05D003805 ORTHO05D004300 1.9e-11 73.2 115 41.7
Glyma.02G055000 Glycine max HOM05D003805 ORTHO05D004300 4.2e-11 72.0 110 43.6
THA.LOC104807465 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 4.2e-11 72.0 111 43.2
Sed0008243 Sechium edule HOM05D003805 ORTHO05D004300 5.4e-11 71.6 109 45.0
Sc16g0002610 Simmondsia chinensis HOM05D003805 ORTHO05D004300 7.1e-11 71.2 114 43.9
THA.LOC104819775 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 7.1e-11 71.2 122 42.6
HanXRQChr07g0191651 Helianthus annuus HOM05D003805 ORTHO05D004300 9.3e-11 70.9 108 38.9
TPR.G24102 Trifolium pratense HOM05D003805 ORTHO05D004300 9.3e-11 70.9 113 42.5
Thecc.01G031800 Theobroma cacao HOM05D003805 ORTHO05D004300 1.6e-10 70.1 118 42.4
HanXRQChr14g0440581 Helianthus annuus HOM05D003805 ORTHO05D004300 2.1e-10 69.7 111 39.6
Lj4g0028115 Lotus japonicus HOM05D003805 ORTHO05D004300 2.1e-10 69.7 98 44.9
Cpa.g.sc6.148 Carica papaya HOM05D003805 ORTHO05D004300 2.7e-10 69.3 126 36.5
TWI09G1369 Tripterygium wilfordii HOM05D003805 ORTHO05D004300 2.7e-10 69.3 110 40.9
Lj4g0007128 Lotus japonicus HOM05D003805 ORTHO05D004300 4.6e-10 68.6 98 43.9
Duzib264G0487 Durio zibethinus HOM05D003805 ORTHO05D004300 6.0e-10 68.2 116 40.5
ECA238G4264 Erigeron canadensis HOM05D003805 ORTHO05D004300 6.0e-10 68.2 111 36.0
Lalb_Chr16g0391061 Lupinus albus HOM05D003805 ORTHO05D004300 6.0e-10 68.2 111 42.3
Glyma.02G054900 Glycine max HOM05D003805 ORTHO05D004300 7.9e-10 67.8 111 43.2
Aa31LG6G13290 Aethionema arabicum HOM05D003805 ORTHO05D004300 1.0e-09 67.4 113 40.7
Lsat_1_v5_gn_2_77300 Lactuca sativa HOM05D003805 ORTHO05D004300 1.3e-09 67.0 110 36.4
AUR62004083 Chenopodium quinoa HOM05D000625 ORTHO05D000467 1.8e-09 66.6 58 53.4
Lj4g0009905 Lotus japonicus HOM05D003805 ORTHO05D004300 1.8e-09 66.6 98 42.9
PGSC0003DMG400003519 Solanum tuberosum HOM05D003805 ORTHO05D004300 1.8e-09 66.6 107 42.1
Lalb_Chr09g0322201 Lupinus albus HOM05D003805 ORTHO05D004300 2.3e-09 66.2 108 39.8
AL7G14560 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 3.9e-09 65.5 113 42.5
AT4G36500 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 3.9e-09 65.5 113 42.5
A01p02370 Brassica napus HOM05D003805 ORTHO05D004300 5.1e-09 65.1 114 40.4
BraA01t00225Z Brassica rapa HOM05D003805 ORTHO05D004300 5.1e-09 65.1 114 40.4
Nitab4.5_0012261g0010 Nicotiana tabacum HOM05D003805 ORTHO05D004300 8.7e-09 64.3 107 39.3
DCAR_016030 Daucus carota HOM05D003805 ORTHO05D004300 1.1e-08 63.9 117 41.9
Glyma.16G135600 Glycine max HOM05D003805 ORTHO05D004300 1.1e-08 63.9 99 45.5
Ah.03g141100 Amaranthus hybridus HOM05D003805 ORTHO05D004300 1.5e-08 63.5 41 61.0
CAN.G358.54 Capsicum annuum HOM05D003805 ORTHO05D004300 1.5e-08 63.5 111 38.7
Aa31LG4G19000 Aethionema arabicum HOM05D003805 ORTHO05D004300 1.9e-08 63.2 115 35.7
CARHR281260 Cardamine hirsuta HOM05D003805 ORTHO05D004300 2.5e-08 62.8 114 36.8
BcaNung05312 Brassica carinata HOM05D003805 ORTHO05D004300 3.3e-08 62.4 113 38.9
Lsat_1_v5_gn_2_77320 Lactuca sativa HOM05D003805 ORTHO05D004300 3.3e-08 62.4 110 37.3
C01p02570 Brassica napus HOM05D003805 ORTHO05D004300 4.3e-08 62.0 113 39.8
Carub.0007s0382 Capsella rubella HOM05D003805 ORTHO05D004300 4.3e-08 62.0 113 40.7
Gohir.A11G183100 Gossypium hirsutum HOM05D003805 ORTHO05D004300 4.3e-08 62.0 115 41.7
BcaNung00729 Brassica carinata HOM05D003805 ORTHO05D004300 5.6e-08 61.6 114 39.5
C01p02580 Brassica napus HOM05D003805 ORTHO05D004300 5.6e-08 61.6 114 39.5
BolC1t00246H Brassica oleracea HOM05D003805 ORTHO05D004300 5.6e-08 61.6 114 39.5
Lalb_Chr09g0333461 Lupinus albus HOM05D003805 ORTHO05D004300 5.6e-08 61.6 99 41.4
Solyc02g085005.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 5.6e-08 61.6 108 40.7
Dinv40009 Davidia involucrata HOM05D002962 ORTHO05D004300 7.4e-08 61.2 110 43.6
BcaNung05311 Brassica carinata HOM05D003805 ORTHO05D004300 9.6e-08 60.8 114 39.5
A03p64280 Brassica napus HOM05D003805 ORTHO05D004300 9.6e-08 60.8 113 39.8
BraA03t15498Z Brassica rapa HOM05D003805 ORTHO05D004300 9.6e-08 60.8 113 39.8
Thhalv10023197m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 9.6e-08 60.8 113 42.5
Manes.01G137700 Manihot esculenta HOM05D003805 ORTHO05D004300 9.6e-08 60.8 42 64.3
Sopen02g029690 Solanum pennellii HOM05D003805 ORTHO05D004300 9.6e-08 60.8 109 41.3
BolC1t00245H Brassica oleracea HOM05D003805 ORTHO05D004300 1.3e-07 60.5 113 38.9
CARHR244820 Cardamine hirsuta HOM05D003805 ORTHO05D004300 1.3e-07 60.5 113 39.8
Thhalv10026576m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 1.3e-07 60.5 113 39.8
Lj2g0025508 Lotus japonicus HOM05D003805 ORTHO05D004300 1.3e-07 60.5 109 35.8
Sp1g22390 Schrenkiella parvula HOM05D003805 ORTHO05D004300 1.3e-07 60.5 115 40.0
Sp7g34160 Schrenkiella parvula HOM05D003805 ORTHO05D004300 1.3e-07 60.5 113 38.1
THA.LOC104826691 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 1.3e-07 60.5 118 33.1
BcaC01g00464 Brassica carinata HOM05D003805 ORTHO05D004300 1.6e-07 60.1 113 38.9
A01p02360 Brassica napus HOM05D003805 ORTHO05D004300 1.6e-07 60.1 113 38.9
C03p80150 Brassica napus HOM05D003805 ORTHO05D004300 1.6e-07 60.1 113 38.9
BolC3t20271H Brassica oleracea HOM05D003805 ORTHO05D004300 1.6e-07 60.1 113 38.9
BraA01t00224Z Brassica rapa HOM05D003805 ORTHO05D004300 1.6e-07 60.1 113 38.9
Glyma.16G135400 Glycine max HOM05D003805 ORTHO05D004300 1.6e-07 60.1 108 38.9
Gorai.007G201700 Gossypium raimondii HOM05D003805 ORTHO05D004300 1.6e-07 60.1 118 38.1
Oeu035340.1 Olea europaea HOM05D003805 ORTHO05D004300 1.6e-07 60.1 110 39.1
BcaNung00728 Brassica carinata HOM05D003805 ORTHO05D004300 2.1e-07 59.7 113 38.9
BraA08t34177Z Brassica rapa HOM05D003805 ORTHO05D004300 2.1e-07 59.7 113 38.9
SalBow8G4897 Salvia bowleyana HOM05D003805 ORTHO05D004300 2.1e-07 59.7 108 36.1
BcaB03g12394 Brassica carinata HOM05D003805 ORTHO05D004300 2.8e-07 59.3 113 38.9
A08p22170 Brassica napus HOM05D003805 ORTHO05D004300 2.8e-07 59.3 113 38.1
C07p61730 Brassica napus HOM05D003805 ORTHO05D004300 2.8e-07 59.3 113 38.9
BolC7t46598H Brassica oleracea HOM05D003805 ORTHO05D004300 2.8e-07 59.3 113 38.9
Peaxi162Scf00366g00073 Petunia axillaris HOM05D003805 ORTHO05D004300 2.8e-07 59.3 71 45.1
Actinidia19196 Actinidia chinensis HOM05D002962 ORTHO05D003280 3.7e-07 58.9 110 38.2
ECA238G1778 Erigeron canadensis HOM05D003805 ORTHO05D004300 4.8e-07 58.5 104 33.7
Nitab4.5_0000178g0280 Nicotiana tabacum HOM05D003805 ORTHO05D004300 6.2e-07 58.2 109 36.7
Manes.02G096100 Manihot esculenta HOM05D003805 ORTHO05D004300 8.1e-07 57.8 114 40.4
Duzib147G0407 Durio zibethinus HOM05D003805 ORTHO05D004300 1.1e-06 57.4 118 39.0
SGA_v2.0_scaffold12G06299 Striga asiatica HOM05D003805 ORTHO05D004300 1.1e-06 57.4 109 34.9
CSS0002171 Camellia sinensis var. sinensis HOM05D003805 ORTHO05D004300 1.8e-06 56.6 86 43.0
Oeu025181.1 Olea europaea HOM05D003805 ORTHO05D004300 1.8e-06 56.6 110 36.4
BcaB02g10024 Brassica carinata HOM05D003805 ORTHO05D004300 2.4e-06 56.2 120 35.0
Gohir.D11G189500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 2.4e-06 56.2 116 37.1
Lalb_Chr05g0212681 Lupinus albus HOM05D003805 ORTHO05D004300 2.4e-06 56.2 106 38.7
Nitab4.5_0007490g0050 Nicotiana tabacum HOM05D003805 ORTHO05D004300 2.4e-06 56.2 112 35.7
Sc03g0003120 Simmondsia chinensis HOM05D003805 ORTHO05D004300 2.4e-06 56.2 46 56.5
A07p17480 Brassica napus HOM05D000001 ORTHO05D010258 4.0e-06 55.5 123 35.0
Migut.H02530 Erythranthe guttata HOM05D003805 ORTHO05D004300 4.0e-06 55.5 39 61.5
Medtr5g020860 Medicago truncatula HOM05D003805 ORTHO05D004300 4.0e-06 55.5 114 34.2
Psat2g157880 Pisum sativum HOM05D003805 ORTHO05D004300 4.0e-06 55.5 115 33.0
Sp7g34150 Schrenkiella parvula HOM05D003805 ORTHO05D004300 4.0e-06 55.5 112 35.7
Sopen02g029700 Solanum pennellii HOM05D003805 ORTHO05D004300 4.0e-06 55.5 109 33.9
Peaxi162Scf00366g00066 Petunia axillaris HOM05D003805 ORTHO05D004300 5.3e-06 55.1 110 37.3
Solyc02g085010.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 5.3e-06 55.1 115 38.3
AL8G45040 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 6.9e-06 54.7 68 48.5
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 6.9e-06 54.7 45 57.8
PGSC0003DMG401003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 6.9e-06 54.7 41 58.5
TPR.G2362 Trifolium pratense HOM05D003805 ORTHO05D004300 9.0e-06 54.3 112 34.8


User provided reference genes

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