Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra07G0015000 Salix brachista HOM05D005163 ORTHO05D006462 0.0e+00 1420.6 697 100.0
Potri.007G017600 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1375.1 698 96.4
Potri.005G118300 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1320.4 699 92.3
Manes.02G100000 Manihot esculenta HOM05D005163 ORTHO05D006462 0.0e+00 1286.9 698 88.3
Ciclev10025040m.g Citrus clementina HOM05D005163 ORTHO05D006462 0.0e+00 1252.7 698 85.7
Thecc.01G025400 Theobroma cacao HOM05D005163 ORTHO05D006462 0.0e+00 1245.7 698 85.7
Atru.chr3.745 Acer truncatum HOM05D005163 ORTHO05D006462 0.0e+00 1244.2 698 85.4
Gohir.A12G062100 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1242.6 698 85.5
GSVIVG01018847001 Vitis vinifera HOM05D005163 ORTHO05D006462 0.0e+00 1242.3 698 84.8
Gorai.008G065200 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1239.9 698 85.5
TWI73G0422 Tripterygium wilfordii HOM05D005163 ORTHO05D006462 0.0e+00 1226.8 691 85.5
TAR376G0780 Trochodendron aralioides HOM05D005163 ORTHO05D006462 0.0e+00 1213.7 698 83.0
Lj4C212G4 Lonicera japonica HOM05D005163 ORTHO05D006462 0.0e+00 1204.1 694 82.7
Eucgr.J02388 Eucalyptus grandis HOM05D005163 ORTHO05D006462 0.0e+00 1203.3 695 81.4
Hma1.2p1_0913F.1_g236050 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 0.0e+00 1201.4 698 82.7
Peaxi162Scf00084g01221 Petunia axillaris HOM05D005163 ORTHO05D006462 0.0e+00 1200.7 695 82.4
QL06p034609 Quercus lobata HOM05D005163 ORTHO05D006462 0.0e+00 1200.3 697 82.2
Cfa006924 Carpinus fangiana HOM05D005163 ORTHO05D006462 0.0e+00 1199.1 698 82.2
RcHm_v2.0_Chr2g0100261 Rosa chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1196.8 693 83.1
Cc07_g10240 Coffea canephora HOM05D005163 ORTHO05D006462 0.0e+00 1196.0 695 82.0
Nitab4.5_0000723g0040 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1194.1 695 82.0
HanXRQChr14g0441521 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1192.2 695 81.6
PGR102G2820 Punica granatum HOM05D005163 ORTHO05D006462 0.0e+00 1191.8 695 80.7
Rhsim08G0123900 Rhododendron simsii HOM05D005163 ORTHO05D006462 0.0e+00 1190.3 723 80.4
Aqoxy5G01510 Aquilegia oxysepala HOM05D005163 ORTHO05D006462 0.0e+00 1189.9 698 80.9
MELO3C007876.2 Cucumis melo HOM05D005163 ORTHO05D006462 0.0e+00 1189.9 694 82.0
FvH4_1g12400 Fragaria vesca HOM05D005163 ORTHO05D006462 0.0e+00 1188.7 693 82.7
Sed0007947 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1187.9 693 81.5
Nitab4.5_0007070g0020 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1187.2 694 81.7
MSTRG.23270 Avicennia marina HOM05D005163 ORTHO05D006462 0.0e+00 1184.1 695 81.9
ClCG01G020030 Citrullus lanatus HOM05D005163 ORTHO05D006462 0.0e+00 1182.2 698 81.1
Migut.H02494 Erythranthe guttata HOM05D005163 ORTHO05D006462 0.0e+00 1181.8 695 81.2
CsaV3_6G046790 Cucumis sativus L. HOM05D005163 ORTHO05D006462 0.0e+00 1181.0 694 81.3
HanXRQChr07g0191281 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1180.2 697 80.6
CAN.G358.18 Capsicum annuum HOM05D005163 ORTHO05D006462 0.0e+00 1178.3 695 81.2
Sopen02g029360 Solanum pennellii HOM05D005163 ORTHO05D006462 0.0e+00 1178.3 695 81.3
PGSC0003DMG400003539 Solanum tuberosum HOM05D005163 ORTHO05D006462 0.0e+00 1177.9 695 81.3
Sc03g0003300 Simmondsia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1177.2 692 81.9
Solyc02g084690.3 Solanum lycopersicum HOM05D005163 ORTHO05D006462 0.0e+00 1176.8 695 81.2
MD02G1137100 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1176.4 694 81.0
Sed0022975 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1176.0 693 79.8
arahy.Tifrunner.gnm1.ann1.U51VHD Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1173.7 698 79.7
SalBow8G4654 Salvia bowleyana HOM05D005163 ORTHO05D006462 0.0e+00 1173.3 694 80.7
arahy.Tifrunner.gnm1.ann1.U2HICA Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1172.1 698 79.7
Actinidia19230 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1171.4 698 81.2
THA.LOC104826639 Tarenaya hassleriana HOM05D005163 ORTHO05D006462 0.0e+00 1169.5 695 80.1
Ah.02g124830 Amaranthus hybridus HOM05D005163 ORTHO05D006462 0.0e+00 1169.1 692 80.6
Haze_03825 Corylus avellana HOM05D005163 ORTHO05D006462 0.0e+00 1167.9 677 82.0
MD15G1250800 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1166.4 694 80.3
Lj2g0010053 Lotus japonicus HOM05D005163 ORTHO05D006462 0.0e+00 1166.0 694 79.8
TPR.G2381 Trifolium pratense HOM05D005163 ORTHO05D006462 0.0e+00 1166.0 698 79.4
Glyma.01G170600 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1165.6 699 79.4
Hund16465 Selenicereus undatus HOM05D005163 ORTHO05D006462 0.0e+00 1163.7 698 79.8
PSO541G1023 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1161.7 695 79.4
Aa31LG4G19160 Aethionema arabicum HOM05D005163 ORTHO05D006462 0.0e+00 1158.7 695 79.1
VMungo1215G3295 Vigna mungo HOM05D005163 ORTHO05D006462 0.0e+00 1158.7 694 79.1
Ca_24882_v3 Cicer arietinum L. HOM05D005163 ORTHO05D006462 0.0e+00 1157.1 698 79.4
Psat2g156920 Pisum sativum HOM05D005163 ORTHO05D006462 0.0e+00 1156.7 698 78.8
CARHR160630 Cardamine hirsuta HOM05D005163 ORTHO05D006462 0.0e+00 1154.4 694 78.4
Lsat_1_v5_gn_2_78240 Lactuca sativa HOM05D005163 ORTHO05D006462 0.0e+00 1154.0 700 78.6
Thhalv10010167m.g Eutrema salsugineum HOM05D005163 ORTHO05D006462 0.0e+00 1152.5 694 78.4
Phvul.002G166800 Phaseolus vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1152.1 694 78.7
Sp5g11160 Schrenkiella parvula HOM05D005163 ORTHO05D006462 0.0e+00 1152.1 695 77.8
Oeu024029.1 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1151.7 694 79.5
Glyma.11G072700 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1151.0 698 78.7
Lalb_Chr16g0377681 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1150.6 698 78.5
Carub.0005s1745 Capsella rubella HOM05D005163 ORTHO05D006462 0.0e+00 1146.3 694 77.8
C07p46120 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1144.4 694 77.2
PSO675G4614 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1144.0 694 78.4
Gorai.007G198300 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1142.1 694 78.7
Prupe.7G163500 Prunus persica HOM05D005163 ORTHO05D006462 0.0e+00 1142.1 694 79.8
Gohir.A11G178900 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1141.7 694 78.7
CANSAT01G3091 Cannabis sativa HOM05D005163 ORTHO05D006462 0.0e+00 1138.6 698 78.8
Medtr5g021150 Medicago truncatula HOM05D005163 ORTHO05D006462 0.0e+00 1138.6 699 78.0
AL5G31470 Arabidopsis lyrata HOM05D005163 ORTHO05D006462 0.0e+00 1136.3 696 77.3
Lalb_Chr05g0212611 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1135.9 698 77.7
FAN28G1722 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1135.2 693 79.9
AT3G51050 Arabidopsis thaliana HOM05D005163 ORTHO05D006462 0.0e+00 1133.6 696 77.3
AUR62007635 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1133.6 719 76.9
BolC7t45128H Brassica oleracea HOM05D005163 ORTHO05D006462 0.0e+00 1132.1 687 77.1
Actinidia26108 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1130.2 698 78.9
Duzib147G0248 Durio zibethinus HOM05D005163 ORTHO05D006462 0.0e+00 1127.5 695 79.3
Nn5g29168 Nelumbo nucifera HOM05D005163 ORTHO05D006462 0.0e+00 1126.7 698 78.1
Oeu005146.2 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1126.3 747 74.3
EL10As8g23870 Beta vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1124.0 693 78.2
SGA_v2.0_scaffold280G46851 Striga asiatica HOM05D005163 ORTHO05D006462 0.0e+00 1119.4 718 76.0
A03p48100 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1110.9 713 74.1
ECA238G0541 Erigeron canadensis HOM05D005163 ORTHO05D006462 0.0e+00 1109.7 647 81.3
AUR62004121 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1108.2 741 74.4
FAN23G1678 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1097.8 681 78.6
ATR0661G156 Amborella trichopoda HOM05D005163 ORTHO05D006462 0.0e+00 1097.4 698 74.8
FAN19G3097 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1097.4 681 78.6
CSS0019296 Camellia sinensis var. sinensis HOM05D005163 ORTHO05D006462 0.0e+00 1095.9 612 85.5
Cpa.g.sc6.195 Carica papaya HOM05D005163 ORTHO05D006462 0.0e+00 1095.5 698 77.9
Duzib187G1632 Durio zibethinus HOM05D005163 ORTHO05D006462 0.0e+00 1092.0 699 77.7
DCAR_031672 Daucus carota HOM05D005163 ORTHO05D006462 9.5e-312 1073.2 695 75.7
HPP92_021000 Vanilla planifolia HOM05D005163 ORTHO05D006462 1.4e-311 1072.4 699 74.2
CDE04G3147 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 2.9e-307 1058.1 678 74.3
Gohir.D12G062000 Gossypium hirsutum HOM05D005163 ORTHO05D006462 3.1e-301 1038.1 585 84.8
Os02g0100700 Oryza sativa ssp. japonica HOM05D005163 ORTHO05D006462 1.5e-300 1035.8 705 71.6
Sabra05G0097300 Salix brachista HOM05D005163 ORTHO05D006462 3.2e-298 1028.1 711 75.2
BcaC06g33060 Brassica carinata HOM05D005163 ORTHO05D006462 3.0e-296 1021.5 689 71.3
Zm00001eb228990 Zea mays HOM05D005163 ORTHO05D006462 2.6e-292 1008.4 702 69.8
COL.COLO4_21984 Corchorus olitorius HOM05D005163 ORTHO05D006462 3.9e-288 994.6 640 76.4
CiPaw.07G054500 Carya illinoinensis HOM05D005163 ORTHO05D006462 8.7e-264 913.7 540 81.7
Gohir.D11G186500 Gossypium hirsutum HOM05D005163 ORTHO05D006462 4.9e-259 897.9 581 74.7
Mapoly0159s0016 Marchantia polymorpha HOM05D005163 ORTHO05D006462 5.7e-247 857.8 699 61.1
Dinv40040 Davidia involucrata HOM05D005163 ORTHO05D006462 5.5e-242 841.3 539 76.3
SMO340G0175 Selaginella moellendorffii HOM05D005163 ORTHO05D006462 4.7e-225 785.0 697 56.5
Pp3c2_36750 Physcomitrium patens HOM05D005163 ORTHO05D006462 2.2e-222 776.2 703 55.9
Pp3c2_36751 Physcomitrium patens HOM05D005163 ORTHO05D006462 2.2e-222 776.2 703 55.9
Pp3c2_37540 Physcomitrium patens HOM05D005163 ORTHO05D006462 2.2e-222 776.2 705 55.7
vmacro17732 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 2.2e-222 776.2 471 80.3
Pp3c11_13530 Physcomitrium patens HOM05D005163 ORTHO05D006462 2.5e-218 762.7 703 55.2
AagrBONN_evm.TU.Sc2ySwM_368.2341 Anthoceros agrestis HOM05D005163 ORTHO05D006462 6.5e-211 738.0 711 54.1
FAN26G0993 Fragaria x ananassa HOM05D005163 ORTHO05D006462 4.4e-191 672.2 386 83.4
CBR_g41477 Chara braunii HOM05D005163 ORTHO05D006462 2.4e-157 560.1 719 43.5
unitig_699.g19557 Utricularia gibba HOM05D005163 ORTHO05D006462 8.4e-150 535.0 375 70.1
C08p26360 Brassica napus HOM05D005163 ORTHO05D006462 7.9e-140 501.9 504 54.4
MCO09G435 Micromonas commoda HOM05D005163 ORTHO05D006462 2.1e-108 397.5 762 36.0
Dinv33585 Davidia involucrata HOM05D005163 ORTHO05D006462 8.8e-107 392.1 249 75.9
MBI01_g27921_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D006462 2.1e-100 370.9 344 57.8
Cre07.g336050 Chlamydomonas reinhardtii HOM05D005163 ORTHO05D006462 4.0e-99 366.7 816 33.0
SEGI_18766 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 2.8e-97 360.5 269 64.7
unitig_699.g19558 Utricularia gibba HOM05D005163 ORTHO05D006462 5.0e-78 296.6 179 76.0
BcaC07g39583 Brassica carinata HOM05D005163 ORTHO05D006462 1.1e-75 288.9 247 60.7
Dinv33586 Davidia involucrata HOM05D005163 ORTHO05D006462 1.3e-73 282.0 184 73.9
Hma1.2p1_0913F.1_g236060 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 2.4e-72 277.7 242 61.2
SHI08600 Sapria himalayana HOM05D005163 ORTHO05D006462 4.7e-68 263.5 188 66.5
PRCOL_00007058 Prasinoderma coloniale HOM05D005163 ORTHO05D006462 2.1e-63 248.1 629 31.3
A09p44140 Brassica napus HOM05D005163 ORTHO05D006462 4.7e-60 236.9 235 55.3
SEGI_33135 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 4.2e-48 197.2 124 73.4
BcaB05g23544 Brassica carinata HOM05D005163 ORTHO05D006462 3.5e-47 194.1 138 72.5
Dinv33584 Davidia involucrata HOM05D005163 ORTHO05D006462 1.3e-41 175.6 93 90.3
BraA09t39874Z Brassica rapa HOM05D005163 ORTHO05D006462 5.6e-37 160.2 94 81.9
CDE12G0395 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 1.4e-35 155.6 231 41.6
Sabra07G0015100 Salix brachista HOM05D005163 ORTHO05D006462 1.4e-35 155.6 75 100.0
vmacro17731 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 4.2e-32 144.1 76 88.2
Hund14017 Selenicereus undatus HOM05D005163 ORTHO05D006462 2.2e-25 121.7 84 64.3
TAR625G0301 Trochodendron aralioides HOM05D005163 ORTHO05D006462 1.8e-22 112.1 86 61.6
SHI08598 Sapria himalayana HOM05D005163 ORTHO05D006462 8.5e-17 93.2 85 55.3
BolC8t50252H Brassica oleracea HOM05D005163 ORTHO05D041294 8.2e-12 76.6 49 75.5
C08p26350 Brassica napus HOM05D005163 ORTHO05D041294 6.9e-11 73.6 49 69.4
MBI01_g27920_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D000004 2.3e-06 58.5 33 75.8


User provided reference genes

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