Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra07G0005800 Salix brachista HOM05D004527 ORTHO05D005335 6.9e-92 341.3 269 100.0
Potri.007G007500 Populus trichocarpa HOM05D004527 ORTHO05D005335 1.4e-84 317.0 269 95.2
Sabra14G0006900 Salix brachista HOM05D004527 ORTHO05D005335 9.3e-81 304.3 269 92.6
Potri.014G012300 Populus trichocarpa HOM05D004527 ORTHO05D005335 6.0e-80 301.6 269 92.2
Manes.12G117900 Manihot esculenta HOM05D004527 ORTHO05D005335 1.4e-73 280.4 269 87.0
RcHm_v2.0_Chr2g0108871 Rosa chinensis HOM05D004527 ORTHO05D005335 7.4e-70 268.1 269 86.6
COL.COLO4_11620 Corchorus olitorius HOM05D004527 ORTHO05D005335 1.3e-69 267.3 266 85.7
Ciclev10026270m.g Citrus clementina HOM05D004527 ORTHO05D005335 1.1e-68 264.2 266 87.2
FAN23G2001 Fragaria x ananassa HOM05D004527 ORTHO05D005335 1.1e-68 264.2 252 90.1
CANSAT25G2808 Cannabis sativa HOM05D004527 ORTHO05D005335 1.4e-68 263.8 271 83.4
Cpa.g.sc129.69 Carica papaya HOM05D004527 ORTHO05D005335 1.8e-68 263.5 268 84.7
MD15G1301200 Malus domestica HOM05D004527 ORTHO05D005335 2.4e-68 263.1 266 85.7
FvH4_1g18280 Fragaria vesca HOM05D004527 ORTHO05D005335 3.1e-68 262.7 264 86.7
FAN19G0418 Fragaria x ananassa HOM05D004527 ORTHO05D005335 3.1e-68 262.7 264 86.7
Gohir.A02G149500 Gossypium hirsutum HOM05D004527 ORTHO05D005335 6.9e-68 261.5 270 84.8
CiPaw.01G001600 Carya illinoinensis HOM05D004527 ORTHO05D005335 9.1e-68 261.2 269 84.8
FAN26G2218 Fragaria x ananassa HOM05D004527 ORTHO05D005335 9.1e-68 261.2 264 86.0
MD02G1190100 Malus domestica HOM05D004527 ORTHO05D005335 1.5e-67 260.4 266 85.0
Duzib147G0417 Durio zibethinus HOM05D004527 ORTHO05D005335 2.6e-67 259.6 269 75.5
Duzib264G0041 Durio zibethinus HOM05D004527 ORTHO05D005335 2.6e-67 259.6 266 85.7
Gohir.D03G030300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 2.6e-67 259.6 270 85.2
Gohir.D12G077300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 2.6e-67 259.6 266 85.3
Gorai.003G032400 Gossypium raimondii HOM05D004527 ORTHO05D005335 2.6e-67 259.6 270 85.2
Gorai.008G086100 Gossypium raimondii HOM05D004527 ORTHO05D005335 2.6e-67 259.6 266 85.3
TWI74G0505 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 3.4e-67 259.2 273 84.6
Prupe.6G216300 Prunus persica HOM05D004527 ORTHO05D005335 4.5e-67 258.8 250 88.4
Duzib187G1832 Durio zibethinus HOM05D004527 ORTHO05D005335 1.0e-66 257.7 266 84.6
Gohir.A12G080600 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.7e-66 256.9 269 85.1
QL06p038806 Quercus lobata HOM05D004527 ORTHO05D005335 1.7e-66 256.9 273 82.8
Thecc.01G076900 Theobroma cacao HOM05D004527 ORTHO05D005335 1.7e-66 256.9 266 84.6
TAR628G0079 Trochodendron aralioides HOM05D004527 ORTHO05D005335 5.0e-66 255.4 271 83.0
TAR381G1318 Trochodendron aralioides HOM05D004527 ORTHO05D005335 6.5e-66 255.0 271 82.7
Gorai.007G226700 Gossypium raimondii HOM05D004527 ORTHO05D005335 2.5e-65 253.1 267 84.3
Gohir.D11G211000 Gossypium hirsutum HOM05D004527 ORTHO05D005335 7.2e-65 251.5 267 83.9
Nitab4.5_0000142g0410 Nicotiana tabacum HOM05D004527 ORTHO05D005335 7.2e-65 251.5 271 83.0
Hma1.2p1_1139F.1_g260820 Hydrangea macrophylla HOM05D004527 ORTHO05D005335 9.4e-65 251.1 268 80.6
Nitab4.5_0000776g0070 Nicotiana tabacum HOM05D004527 ORTHO05D005335 2.1e-64 250.0 271 82.7
TAR625G0245 Trochodendron aralioides HOM05D004527 ORTHO05D005335 3.6e-64 249.2 271 82.7
Aqoxy6G02924 Aquilegia oxysepala HOM05D004527 ORTHO05D005335 6.1e-64 248.4 275 81.8
PSO017G0995 Papaver somniferum HOM05D004527 ORTHO05D005335 3.0e-63 246.1 274 76.6
PSO170G0158 Papaver somniferum HOM05D004527 ORTHO05D005335 8.8e-63 244.6 274 78.8
CAN.G1343.10 Capsicum annuum HOM05D004527 ORTHO05D005335 1.5e-62 243.8 275 81.1
Solyc02g092040.1 Solanum lycopersicum HOM05D004527 ORTHO05D005335 2.0e-62 243.4 272 82.0
Sopen02g036620 Solanum pennellii HOM05D004527 ORTHO05D005335 2.0e-62 243.4 272 82.0
THA.LOC104827740 Tarenaya hassleriana HOM05D004527 ORTHO05D005335 2.6e-62 243.0 265 81.5
Nn5g30677 Nelumbo nucifera HOM05D004527 ORTHO05D005335 4.4e-62 242.3 252 86.1
GSVIVG01007390001 Vitis vinifera HOM05D004527 ORTHO05D005335 5.7e-62 241.9 248 85.5
Cc07_g07400 Coffea canephora HOM05D004527 ORTHO05D005335 7.4e-62 241.5 275 79.6
PGSC0003DMG400043061 Solanum tuberosum HOM05D004527 ORTHO05D005335 1.7e-61 240.4 272 81.2
Oeu034346.1 Olea europaea HOM05D004527 ORTHO05D005335 2.2e-61 240.0 273 80.2
Ca_24669_v3 Cicer arietinum L. HOM05D004527 ORTHO05D005335 4.8e-61 238.8 269 80.3
MELO3C007658.2 Cucumis melo HOM05D004527 ORTHO05D005335 6.3e-61 238.4 267 80.9
CsaV3_6G044360 Cucumis sativus L. HOM05D004527 ORTHO05D005335 6.3e-61 238.4 267 80.9
ClCG01G017820 Citrullus lanatus HOM05D004527 ORTHO05D005335 1.1e-60 237.7 266 81.2
Glyma.01G196000 Glycine max HOM05D004527 ORTHO05D005335 5.3e-60 235.3 264 77.7
PGR004G2554 Punica granatum HOM05D004527 ORTHO05D005335 9.1e-60 234.6 250 85.6
SalBow3G2616 Salvia bowleyana HOM05D004527 ORTHO05D005335 9.1e-60 234.6 254 82.3
Sed0004587 Sechium edule HOM05D004527 ORTHO05D005335 3.4e-59 232.6 259 79.9
VMungo1215G0719 Vigna mungo HOM05D004527 ORTHO05D005335 3.4e-59 232.6 264 75.0
CSS0027520 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 4.5e-59 232.3 271 78.6
CSS0031628 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 4.5e-59 232.3 271 78.6
TPR.G9333 Trifolium pratense HOM05D004527 ORTHO05D005335 4.5e-59 232.3 266 80.1
DCAR_025824 Daucus carota HOM05D004527 ORTHO05D005335 1.7e-58 230.3 275 78.9
Phvul.002G009000 Phaseolus vulgaris HOM05D004527 ORTHO05D005335 2.2e-58 229.9 264 79.5
Aa31LG1G16250 Aethionema arabicum HOM05D004527 ORTHO05D005335 2.9e-58 229.6 265 78.5
Sp5g12330 Schrenkiella parvula HOM05D004527 ORTHO05D005335 2.9e-58 229.6 266 78.6
MSTRG.23652 Avicennia marina HOM05D004527 ORTHO05D005335 5.0e-58 228.8 269 78.8
Thhalv10010947m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 1.1e-57 227.6 266 78.2
arahy.Tifrunner.gnm1.ann1.1FYE2A Arachis hypogaea HOM05D004527 ORTHO05D005335 1.9e-57 226.9 264 78.4
arahy.Tifrunner.gnm1.ann1.SGKS0T Arachis hypogaea HOM05D004527 ORTHO05D005335 1.9e-57 226.9 264 78.4
Thhalv10005320m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 3.2e-57 226.1 265 79.2
Lj4P166T18 Lonicera japonica HOM05D004527 ORTHO05D005335 3.2e-57 226.1 273 78.8
Lalb_Chr16g0379001 Lupinus albus HOM05D004527 ORTHO05D005335 3.2e-57 226.1 264 79.5
CARHR279830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 4.2e-57 225.7 264 77.7
Glyma.11G045700 Glycine max HOM05D004527 ORTHO05D005335 4.2e-57 225.7 265 78.9
AT3G49750 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 5.5e-57 225.3 267 77.2
Migut.L00429 Erythranthe guttata HOM05D004527 ORTHO05D005335 5.5e-57 225.3 253 82.2
Sp2g28920 Schrenkiella parvula HOM05D004527 ORTHO05D005335 7.2e-57 224.9 267 77.9
Aa31LG4G18240 Aethionema arabicum HOM05D004527 ORTHO05D005335 9.4e-57 224.6 267 77.9
EL10Ac6g15591 Beta vulgaris HOM05D004527 ORTHO05D005335 1.6e-56 223.8 268 78.4
AL5G29710 Arabidopsis lyrata HOM05D004527 ORTHO05D005335 2.1e-56 223.4 267 76.8
MSTRG.2802 Avicennia marina HOM05D004527 ORTHO05D005335 2.1e-56 223.4 269 76.2
Carub.0005s1611 Capsella rubella HOM05D004527 ORTHO05D005335 3.6e-56 222.6 267 77.2
Peaxi162Scf00096g00187 Petunia axillaris HOM05D004527 ORTHO05D005335 3.6e-56 222.6 243 85.6
MSTRG.15342 Avicennia marina HOM05D004527 ORTHO05D005335 4.7e-56 222.2 270 76.3
Lj2g0022505 Lotus japonicus HOM05D004527 ORTHO05D005335 4.7e-56 222.2 269 78.8
A09p09200 Brassica napus HOM05D004527 ORTHO05D005335 7.9e-56 221.5 267 78.7
Oeu013345.1 Olea europaea HOM05D004527 ORTHO05D005335 1.4e-55 220.7 273 77.3
Carub.0008s2672 Capsella rubella HOM05D004527 ORTHO05D005335 1.8e-55 220.3 267 78.3
Psat0s1639g0080 Pisum sativum HOM05D004527 ORTHO05D005335 1.8e-55 220.3 252 81.3
C08p24770 Brassica napus HOM05D004527 ORTHO05D005335 2.3e-55 219.9 266 76.7
AT5G65830 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 3.0e-55 219.5 266 76.7
BraA09t36572Z Brassica rapa HOM05D004527 ORTHO05D005335 5.2e-55 218.8 267 78.3
MSTRG.3484 Avicennia marina HOM05D004527 ORTHO05D005335 1.1e-54 217.6 250 80.4
C09p10730 Brassica napus HOM05D004527 ORTHO05D005335 1.5e-54 217.2 265 78.5
BcaC04g23245 Brassica carinata HOM05D004527 ORTHO05D005335 2.0e-54 216.9 265 78.5
BolC9t53969H Brassica oleracea HOM05D004527 ORTHO05D005335 2.0e-54 216.9 265 78.5
AUR62007543 Chenopodium quinoa HOM05D004527 ORTHO05D005335 2.0e-54 216.9 253 80.6
C01p30660 Brassica napus HOM05D004527 ORTHO05D005335 2.6e-54 216.5 267 77.2
SGA_v2.0_scaffold269G46278 Striga asiatica HOM05D004527 ORTHO05D005335 2.6e-54 216.5 267 76.0
BolC8t50091H Brassica oleracea HOM05D004527 ORTHO05D005335 3.3e-54 216.1 266 76.3
BcaB01g00676 Brassica carinata HOM05D004527 ORTHO05D005335 4.4e-54 215.7 266 75.9
TWI77G0125 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 4.4e-54 215.7 230 89.1
BcaC07g39438 Brassica carinata HOM05D004527 ORTHO05D005335 7.4e-54 214.9 266 76.3
BcaC09g49968 Brassica carinata HOM05D004527 ORTHO05D005335 7.4e-54 214.9 267 76.8
A01p24580 Brassica napus HOM05D004527 ORTHO05D005335 7.4e-54 214.9 267 76.8
BolC1t03001H Brassica oleracea HOM05D004527 ORTHO05D005335 7.4e-54 214.9 267 76.8
BraA01t02368Z Brassica rapa HOM05D004527 ORTHO05D005335 7.4e-54 214.9 267 76.8
BcaB05g23149 Brassica carinata HOM05D004527 ORTHO05D005335 9.7e-54 214.5 267 76.8
Lj7C113T0 Lonicera japonica HOM05D004527 ORTHO05D005335 1.7e-53 213.8 272 74.3
HanXRQChr14g0447741 Helianthus annuus HOM05D004527 ORTHO05D005335 2.2e-53 213.4 267 77.2
BcaB04g20032 Brassica carinata HOM05D004527 ORTHO05D005335 6.3e-53 211.8 265 77.0
Migut.H00322 Erythranthe guttata HOM05D004527 ORTHO05D005335 8.2e-53 211.5 265 77.0
vmacro23340 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 1.4e-52 210.7 270 51.9
Dinv26963 Davidia involucrata HOM05D004527 ORTHO05D005335 1.8e-52 210.3 244 82.0
Medtr5g015050 Medicago truncatula HOM05D004527 ORTHO05D005335 5.3e-52 208.8 266 75.6
Gohir.A11G211900 Gossypium hirsutum HOM05D004527 ORTHO05D005335 9.1e-52 208.0 277 44.8
CARHR158830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 1.6e-51 207.2 255 77.3
Lsat_1_v5_gn_3_85800 Lactuca sativa HOM05D004527 ORTHO05D005335 2.0e-51 206.8 253 79.4
Sc03g0002710 Simmondsia chinensis HOM05D004527 ORTHO05D005335 2.0e-51 206.8 265 75.5
HPP92_020623 Vanilla planifolia HOM05D004527 ORTHO05D005335 2.6e-51 206.5 274 74.1
Lsat_1_v5_gn_4_158441 Lactuca sativa HOM05D004527 ORTHO05D005335 5.0e-50 202.2 266 76.7
HanXRQChr04g0112451 Helianthus annuus HOM05D004527 ORTHO05D005335 2.5e-49 199.9 273 71.8
Actinidia11961 Actinidia chinensis HOM05D004527 ORTHO05D005335 3.2e-49 199.5 270 74.4
Eucgr.I00670 Eucalyptus grandis HOM05D004527 ORTHO05D005335 4.2e-49 199.1 255 78.0
MBI16_g04107_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 1.2e-48 197.6 267 74.5
ATR0739G175 Amborella trichopoda HOM05D004527 ORTHO05D005335 2.1e-48 196.8 261 70.5
Dinv23049 Davidia involucrata HOM05D004527 ORTHO05D005335 2.1e-48 196.8 233 83.3
FAN28G1986 Fragaria x ananassa HOM05D004527 ORTHO05D005335 4.7e-48 195.7 226 86.7
Manes.13G108600 Manihot esculenta HOM05D004527 ORTHO05D005335 1.0e-47 194.5 217 85.7
CSS0048095 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 8.8e-47 191.4 230 84.3
Rhsim10G0094600 Rhododendron simsii HOM05D004527 ORTHO05D005335 1.2e-46 191.0 268 73.5
Lsat_1_v5_gn_2_80060 Lactuca sativa HOM05D004527 ORTHO05D005335 2.0e-46 190.3 229 83.4
HanXRQChr11g0323561 Helianthus annuus HOM05D004527 ORTHO05D005335 2.6e-46 189.9 265 75.5
Actinidia36420 Actinidia chinensis HOM05D004527 ORTHO05D005335 3.3e-46 189.5 235 82.6
SEGI_31883 Sequoiadendron giganteum HOM05D004527 ORTHO05D005335 4.8e-45 185.7 249 68.7
Os09g0131200 Oryza sativa ssp. japonica HOM05D004527 ORTHO05D005335 6.3e-45 185.3 260 73.1
Zm00001eb192660 Zea mays HOM05D004527 ORTHO05D005335 5.3e-44 182.2 257 71.2
Zm00001eb257530 Zea mays HOM05D004527 ORTHO05D005335 1.6e-43 180.6 259 71.0
SHI12014 Sapria himalayana HOM05D000105 ORTHO05D000023 2.2e-42 176.8 237 80.2
CDE01G0566 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 5.0e-42 175.6 259 71.4
BcaC04g23244 Brassica carinata HOM05D004527 ORTHO05D005335 6.1e-40 168.7 265 57.7
Atru.chr3.1065 Acer truncatum HOM05D004527 ORTHO05D005335 1.4e-36 157.5 210 81.9
Haze_15019 Corylus avellana HOM05D004527 ORTHO05D005335 1.7e-34 150.6 83 88.0
Nn6g34534 Nelumbo nucifera HOM05D004527 ORTHO05D005335 1.6e-32 144.1 101 69.3
Sc03g0002680 Simmondsia chinensis HOM05D004527 ORTHO05D005335 2.3e-31 140.2 205 80.0
AUR62004034 Chenopodium quinoa HOM05D004527 ORTHO05D005335 1.4e-28 131.0 85 76.5
Pp3c11_20500 Physcomitrium patens HOM05D004527 ORTHO05D005335 5.4e-28 129.0 271 64.9
Pp3c7_5330 Physcomitrium patens HOM05D004527 ORTHO05D005335 1.6e-27 127.5 272 63.6
vmacro04599 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 1.3e-26 124.4 95 64.2
SMO351G0231 Selaginella moellendorffii HOM05D004527 ORTHO05D005335 1.5e-25 120.9 265 54.3
Mapoly0037s0017 Marchantia polymorpha HOM05D004527 ORTHO05D005335 8.9e-23 111.7 262 57.6
MBI16_g37622_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 5.7e-22 109.0 81 61.7
CDE12G0864 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 9.8e-22 108.2 83 63.9
vmacro04600 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 6.4e-21 105.5 86 67.4
SalBow1G8006 Salvia bowleyana HOM05D004527 ORTHO05D005335 1.3e-13 81.3 53 75.5
TPR.G15150 Trifolium pratense HOM05D000094 ORTHO05D001056 6.2e-08 62.4 98 38.8
TPR.G28216 Trifolium pratense HOM05D000094 ORTHO05D001056 3.1e-07 60.1 98 36.7
SEGI_31292 Sequoiadendron giganteum HOM05D000021 ORTHO05D000010 6.8e-07 58.9 97 39.2
A03p45060 Brassica napus HOM05D000168 ORTHO05D001351 8.9e-07 58.5 97 38.1
C03p55930 Brassica napus HOM05D000168 ORTHO05D001351 8.9e-07 58.5 97 38.1
BolC3t17876H Brassica oleracea HOM05D000168 ORTHO05D001351 8.9e-07 58.5 97 38.1
ATR0730G160 Amborella trichopoda HOM05D004527 ORTHO05D005335 1.2e-06 58.2 61 45.9
AagrBONN_evm.TU.Sc2ySwM_228.2437 Anthoceros agrestis HOM05D004527 ORTHO05D005335 1.5e-06 57.8 229 58.5
BraA03t13641Z Brassica rapa HOM05D000168 ORTHO05D001351 2.0e-06 57.4 97 37.1
LjContig00528g0024505 Lotus japonicus HOM05D000094 ORTHO05D001056 2.6e-06 57.0 98 34.7
BcaC01g03115 Brassica carinata HOM05D000168 ORTHO05D001351 5.8e-06 55.8 78 39.7
arahy.Tifrunner.gnm1.ann1.XV37PI Arachis hypogaea HOM05D000021 ORTHO05D000010 9.9e-06 55.1 94 34.0
Solyc02g067560.1 Solanum lycopersicum HOM05D000094 ORTHO05D002904 9.9e-06 55.1 99 39.4
Sopen02g016690 Solanum pennellii HOM05D000094 ORTHO05D002904 9.9e-06 55.1 99 39.4
PGSC0003DMG400022632 Solanum tuberosum HOM05D000094 ORTHO05D002904 9.9e-06 55.1 100 37.0


User provided reference genes

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