Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0211900 Salix brachista HOM05D001798 ORTHO05D005040 6.3e-103 377.5 197 100.0
Sabra06G0212200 Salix brachista HOM05D001798 ORTHO05D005040 9.3e-54 214.2 117 96.6
Potri.006G273500 Populus trichocarpa HOM05D001798 ORTHO05D005040 1.0e-52 210.7 117 91.5
Potri.006G273566 Populus trichocarpa HOM05D001798 ORTHO05D005040 1.0e-52 210.7 117 91.5
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 5.1e-36 155.2 133 68.4
Potri.018G006800 Populus trichocarpa HOM05D001798 ORTHO05D005040 6.7e-36 154.8 121 72.7
Manes.16G135500 Manihot esculenta HOM05D001798 ORTHO05D005040 1.7e-31 140.2 117 65.8
Manes.03G004000 Manihot esculenta HOM05D001798 ORTHO05D005040 1.4e-25 120.6 108 62.0
Gohir.D06G107900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 4.1e-25 119.0 118 55.1
QL12p025154 Quercus lobata HOM05D001798 ORTHO05D005040 2.6e-24 116.3 117 57.3
Gorai.010G122600 Gossypium raimondii HOM05D001798 ORTHO05D005040 2.2e-23 113.2 121 52.9
Gohir.A06G105500 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.4e-22 110.5 120 52.5
Duzib168G0008 Durio zibethinus HOM05D001798 ORTHO05D005040 3.2e-22 109.4 117 53.8
CiPaw.08G019800 Carya illinoinensis HOM05D001798 ORTHO05D005040 2.7e-21 106.3 119 48.7
COL.COLO4_19032 Corchorus olitorius HOM05D001798 ORTHO05D005040 3.6e-21 105.9 125 50.4
Duzib187G0913 Durio zibethinus HOM05D001798 ORTHO05D005040 1.5e-19 100.5 122 48.4
Haze_21742 Corylus avellana HOM05D001798 ORTHO05D005040 2.0e-19 100.1 132 47.7
Aqoxy7G03082 Aquilegia oxysepala HOM05D001798 ORTHO05D005040 2.6e-19 99.8 127 47.2
Haze_21741 Corylus avellana HOM05D001798 ORTHO05D005040 2.6e-19 99.8 132 47.7
SGA_v2.0_scaffold301G47805 Striga asiatica HOM05D000485 ORTHO05D005040 3.3e-19 99.4 120 45.0
TAR383G0769 Trochodendron aralioides HOM05D001798 ORTHO05D005040 4.8e-18 95.5 130 45.4
Dinv41255 Davidia involucrata HOM05D001798 ORTHO05D004054 1.1e-17 94.4 117 51.3
Haze_21745 Corylus avellana HOM05D001798 ORTHO05D005040 1.4e-17 94.0 133 46.6
Duzib170G0014 Durio zibethinus HOM05D001798 ORTHO05D005040 1.4e-17 94.0 114 49.1
Thecc.09G171700 Theobroma cacao HOM05D001798 ORTHO05D005040 1.4e-17 94.0 114 48.2
Cfa013271 Carpinus fangiana HOM05D001798 ORTHO05D005040 1.8e-17 93.6 118 52.5
COL.COLO4_36848 Corchorus olitorius HOM05D001798 ORTHO05D005040 2.4e-17 93.2 116 46.6
Prupe.1G460000 Prunus persica HOM05D001798 ORTHO05D005040 3.1e-17 92.8 122 46.7
Hma1.2p1_2478F.1_g322950 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 4.1e-17 92.4 128 43.8
Atru.chr7.661 Acer truncatum HOM05D001798 ORTHO05D005040 5.3e-17 92.0 120 46.7
Cpa.g.sc95.60 Carica papaya HOM05D001798 ORTHO05D005040 5.3e-17 92.0 119 48.7
Duzib150G1419 Durio zibethinus HOM05D001798 ORTHO05D005040 5.3e-17 92.0 114 47.4
SGA_v2.0_scaffold12G06063 Striga asiatica HOM05D001798 ORTHO05D005040 5.3e-17 92.0 118 42.4
CiPaw.07G191500 Carya illinoinensis HOM05D001798 ORTHO05D005040 7.0e-17 91.7 118 46.6
Cfa013270 Carpinus fangiana HOM05D001798 ORTHO05D005040 9.1e-17 91.3 113 50.4
Hma1.2p1_1646F.1_g295510 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 9.1e-17 91.3 128 43.8
Prupe.1G087800 Prunus persica HOM05D001798 ORTHO05D005040 9.1e-17 91.3 118 46.6
Potri.018G094100 Populus trichocarpa HOM05D001798 ORTHO05D005040 1.5e-16 90.5 119 46.2
SGA_v2.0_scaffold69G23263 Striga asiatica HOM05D001798 ORTHO05D005040 1.5e-16 90.5 117 45.3
Haze_21740 Corylus avellana HOM05D001798 ORTHO05D005040 2.0e-16 90.1 112 51.8
QL02p097578 Quercus lobata HOM05D001798 ORTHO05D005040 3.5e-16 89.4 120 46.7
PGSC0003DMG400016261 Solanum tuberosum HOM05D001798 ORTHO05D005040 3.5e-16 89.4 128 43.8
Haze_21738 Corylus avellana HOM05D001798 ORTHO05D005040 4.5e-16 89.0 107 51.4
Sopen11g004390 Solanum pennellii HOM05D001798 ORTHO05D005040 5.9e-16 88.6 125 44.0
Cpa.g.sc23.17 Carica papaya HOM05D001798 ORTHO05D005040 7.7e-16 88.2 119 49.6
MSTRG.19701 Avicennia marina HOM05D001798 ORTHO05D005040 1.3e-15 87.4 113 46.9
Solyc11g008600.1 Solanum lycopersicum HOM05D001798 ORTHO05D005040 1.7e-15 87.0 126 43.7
CAN.G321.14 Capsicum annuum HOM05D001798 ORTHO05D005040 2.2e-15 86.7 134 41.8
CSS0007301 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 2.9e-15 86.3 124 45.2
SalBow6G3226 Salvia bowleyana HOM05D001798 ORTHO05D005040 2.9e-15 86.3 113 45.1
SalBow6G3242 Salvia bowleyana HOM05D001798 ORTHO05D005040 2.9e-15 86.3 113 45.1
AUR62020597 Chenopodium quinoa HOM05D001798 ORTHO05D005040 3.8e-15 85.9 140 40.0
Gohir.A08G085900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 3.8e-15 85.9 114 45.6
Gorai.004G100700 Gossypium raimondii HOM05D001798 ORTHO05D005040 3.8e-15 85.9 113 46.0
Sabra18G0080900 Salix brachista HOM05D001798 ORTHO05D005040 3.8e-15 85.9 118 42.4
Haze_19626 Corylus avellana HOM05D001798 ORTHO05D005040 6.5e-15 85.1 117 43.6
MD13G1257600 Malus domestica HOM05D001798 ORTHO05D005040 8.5e-15 84.7 129 40.3
QL02p097572 Quercus lobata HOM05D001798 ORTHO05D005040 8.5e-15 84.7 132 45.5
MD12G1161200 Malus domestica HOM05D001798 ORTHO05D005040 1.1e-14 84.3 129 40.3
FvH4_3g45900 Fragaria vesca HOM05D001798 ORTHO05D005040 1.9e-14 83.6 117 47.0
Peaxi162Scf00296g00124 Petunia axillaris HOM05D001798 ORTHO05D005040 1.9e-14 83.6 130 43.1
Gohir.D08G094900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 2.5e-14 83.2 113 45.1
Cfa016621 Carpinus fangiana HOM05D001798 ORTHO05D005040 3.2e-14 82.8 117 42.7
Migut.J01450 Erythranthe guttata HOM05D001798 ORTHO05D005040 3.2e-14 82.8 117 42.7
Ciclev10010207m.g Citrus clementina HOM05D001798 ORTHO05D005040 4.2e-14 82.4 121 49.6
Migut.K00248 Erythranthe guttata HOM05D001798 ORTHO05D005040 5.5e-14 82.0 123 41.5
RcHm_v2.0_Chr4g0402691 Rosa chinensis HOM05D001798 ORTHO05D005040 5.5e-14 82.0 123 46.3
MSTRG.26226 Avicennia marina HOM05D001798 ORTHO05D005040 7.2e-14 81.6 116 42.2
FvH4_4g09360 Fragaria vesca HOM05D001798 ORTHO05D005040 7.2e-14 81.6 117 46.2
TWI34G0376 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 7.2e-14 81.6 127 44.1
CsaV3_1G031530 Cucumis sativus L. HOM05D001798 ORTHO05D005040 9.4e-14 81.3 113 43.4
FAN22G0641 Fragaria x ananassa HOM05D001798 ORTHO05D005040 9.4e-14 81.3 117 46.2
MD08G1128200 Malus domestica HOM05D001798 ORTHO05D005040 9.4e-14 81.3 116 45.7
Ciclev10010310m.g Citrus clementina HOM05D001798 ORTHO05D005040 1.2e-13 80.9 121 48.8
FvH4_2g36750 Fragaria vesca HOM05D001798 ORTHO05D005040 1.2e-13 80.9 118 45.8
FAN27G0855 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.2e-13 80.9 118 45.8
Manes.14G151300 Manihot esculenta HOM05D001798 ORTHO05D005040 1.2e-13 80.9 129 42.6
RcHm_v2.0_Chr4g0402701 Rosa chinensis HOM05D001798 ORTHO05D005040 1.2e-13 80.9 123 44.7
THA.LOC104811795 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 1.6e-13 80.5 130 48.5
AUR62009071 Chenopodium quinoa HOM05D001798 ORTHO05D005040 2.1e-13 80.1 142 43.0
FAN15G2712 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.1e-13 80.1 111 47.7
TWI34G1338 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 2.1e-13 80.1 127 44.1
Ah.11g043870 Amaranthus hybridus HOM05D001798 ORTHO05D005040 2.7e-13 79.7 139 44.6
MELO3C017469.2 Cucumis melo HOM05D001798 ORTHO05D005040 3.6e-13 79.3 113 44.2
Eucgr.C02285 Eucalyptus grandis HOM05D001798 ORTHO05D005040 3.6e-13 79.3 119 45.4
Eucgr.C02286 Eucalyptus grandis HOM05D001798 ORTHO05D005040 4.7e-13 79.0 118 43.2
RcHm_v2.0_Chr1g0336341 Rosa chinensis HOM05D001798 ORTHO05D005040 4.7e-13 79.0 109 47.7
Sed0020469 Sechium edule HOM05D001798 ORTHO05D005040 4.7e-13 79.0 113 45.1
Thecc.09G007300 Theobroma cacao HOM05D001798 ORTHO05D005040 4.7e-13 79.0 82 53.7
FAN20G2332 Fragaria x ananassa HOM05D001798 ORTHO05D005040 8.0e-13 78.2 118 44.1
CiPaw.07G212400 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.0e-12 77.8 124 46.8
MBI16_g35927_MAGBIO Magnolia biondii HOM05D000772 ORTHO05D005040 1.0e-12 77.8 117 43.6
RcHm_v2.0_Chr6g0305001 Rosa chinensis HOM05D001798 ORTHO05D005040 1.8e-12 77.0 121 44.6
ClCG06G013270 Citrullus lanatus HOM05D001798 ORTHO05D005040 2.3e-12 76.6 106 44.3
Medtr4g128470 Medicago truncatula HOM05D001798 ORTHO05D005040 2.3e-12 76.6 134 40.3
Nn2g12701 Nelumbo nucifera HOM05D001798 ORTHO05D005040 2.3e-12 76.6 113 40.7
MD15G1107700 Malus domestica HOM05D001798 ORTHO05D005040 5.2e-12 75.5 119 43.7
EL10Ac2g03758 Beta vulgaris HOM05D001798 ORTHO05D005040 6.7e-12 75.1 139 41.0
MBI16_g35924_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 6.7e-12 75.1 114 44.7
Thhalv10015454m.g Eutrema salsugineum HOM05D001798 ORTHO05D005040 1.1e-11 74.3 120 45.8
AT5G57510 Arabidopsis thaliana HOM05D001798 ORTHO05D005040 1.5e-11 73.9 112 44.6
Ciclev10009891m.g Citrus clementina HOM05D001798 ORTHO05D005040 1.5e-11 73.9 119 39.5
MBI16_g35923_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 1.5e-11 73.9 113 43.4
AL8G33450 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 2.0e-11 73.6 112 44.6
AL8G33510 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 2.0e-11 73.6 112 44.6
BcaC03g14152 Brassica carinata HOM05D001798 ORTHO05D005040 2.6e-11 73.2 120 45.0
A02p08470 Brassica napus HOM05D001798 ORTHO05D005040 2.6e-11 73.2 113 45.1
C02p14230 Brassica napus HOM05D001798 ORTHO05D005040 2.6e-11 73.2 120 45.0
BolC2t07547H Brassica oleracea HOM05D001798 ORTHO05D005040 2.6e-11 73.2 120 45.0
BraA02t05918Z Brassica rapa HOM05D001798 ORTHO05D005040 2.6e-11 73.2 113 45.1
CARHR271290 Cardamine hirsuta HOM05D001798 ORTHO05D005040 3.3e-11 72.8 121 46.3
SalBow1G2776 Salvia bowleyana HOM05D001798 ORTHO05D005040 4.4e-11 72.4 107 42.1
Sp6g19210 Schrenkiella parvula HOM05D001798 ORTHO05D005040 4.4e-11 72.4 113 45.1
CSS0005198 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 5.7e-11 72.0 118 44.1
CSS0011185 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 5.7e-11 72.0 118 44.1
Lalb_Chr12g0199341 Lupinus albus HOM05D001798 ORTHO05D005040 5.7e-11 72.0 117 44.4
BcaB05g22348 Brassica carinata HOM05D001798 ORTHO05D005040 7.4e-11 71.6 121 47.1
THA.LOC104817796 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 7.4e-11 71.6 124 42.7
BcaB08g36104 Brassica carinata HOM05D001798 ORTHO05D005040 9.7e-11 71.2 120 44.2
Atru.chr7.2645 Acer truncatum HOM05D001798 ORTHO05D005040 1.3e-10 70.9 114 50.0
VMungo1215G0796 Vigna mungo HOM05D001798 ORTHO05D005040 1.3e-10 70.9 123 42.3
CSS0022506 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.7e-10 70.5 118 43.2
CSS0019887 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 2.2e-10 70.1 118 43.2
PGR142G4397 Punica granatum HOM05D001798 ORTHO05D005040 2.2e-10 70.1 124 38.7
TPR.G5377 Trifolium pratense HOM05D001798 ORTHO05D005040 2.2e-10 70.1 117 42.7
CANSAT11G0905 Cannabis sativa HOM05D001798 ORTHO05D005040 4.8e-10 68.9 150 33.3
Glyma.13G095700 Glycine max HOM05D001798 ORTHO05D005040 6.3e-10 68.6 118 42.4
HanXRQChr05g0137241 Helianthus annuus HOM05D001798 ORTHO05D005040 6.3e-10 68.6 133 37.6
Lsat_1_v5_gn_8_67120 Lactuca sativa HOM05D001798 ORTHO05D005040 6.3e-10 68.6 139 33.8
Carub.0008s1801 Capsella rubella HOM05D001798 ORTHO05D005040 8.2e-10 68.2 107 46.7
Ca_21215_v3 Cicer arietinum L. HOM05D001798 ORTHO05D005040 8.2e-10 68.2 117 37.6
Psat4g011600 Pisum sativum HOM05D001798 ORTHO05D005040 1.4e-09 67.4 113 44.2
Aa31LG3G13380 Aethionema arabicum HOM05D001798 ORTHO05D005040 3.1e-09 66.2 121 44.6
Sc01g0002270 Simmondsia chinensis HOM05D001798 ORTHO05D005040 4.1e-09 65.9 151 36.4
Phvul.003G146800 Phaseolus vulgaris HOM05D001798 ORTHO05D005040 5.3e-09 65.5 123 43.9
Nitab4.5_0004131g0060 Nicotiana tabacum HOM05D001798 ORTHO05D005040 1.2e-08 64.3 117 37.6
CiPaw.08G037100 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.6e-08 63.9 122 34.4
Glyma.17G064300 Glycine max HOM05D001798 ORTHO05D005040 3.5e-08 62.8 114 42.1
Lj4g0012331 Lotus japonicus HOM05D001798 ORTHO05D005040 3.5e-08 62.8 117 39.3
PSO349G0296 Papaver somniferum HOM05D001798 ORTHO05D005040 3.5e-08 62.8 124 38.7
ECA240G2061 Erigeron canadensis HOM05D001798 ORTHO05D005040 1.0e-07 61.2 136 37.5
FAN11G1762 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.3e-07 60.8 94 45.7
Nitab4.5_0004131g0070 Nicotiana tabacum HOM05D001798 ORTHO05D005040 1.3e-07 60.8 129 34.1
PGSC0003DMG400026318 Solanum tuberosum HOM05D001798 ORTHO05D005040 1.3e-07 60.8 125 32.8
ClCG10G000980 Citrullus lanatus HOM05D001798 ORTHO05D022392 1.7e-07 60.5 124 37.9
Eucgr.C00167 Eucalyptus grandis HOM05D001798 ORTHO05D005040 2.2e-07 60.1 114 36.0
AUR62022665 Chenopodium quinoa HOM05D001798 ORTHO05D005040 2.9e-07 59.7 118 39.8
Rhsim01G0006100 Rhododendron simsii HOM05D001798 ORTHO05D005040 5.0e-07 58.9 73 50.7
Ciclev10010429m.g Citrus clementina HOM05D001798 ORTHO05D005040 8.5e-07 58.2 93 44.1
PGR044G1765 Punica granatum HOM05D001798 ORTHO05D005040 8.5e-07 58.2 129 37.2
FAN21G0239 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.9e-06 57.0 94 44.7
HanXRQChr09g0254491 Helianthus annuus HOM05D001798 ORTHO05D005040 2.5e-06 56.6 147 29.9
BcaC04g19961 Brassica carinata HOM05D001798 ORTHO05D005040 7.2e-06 55.1 82 46.3
BolC9t57787H Brassica oleracea HOM05D001798 ORTHO05D005040 7.2e-06 55.1 82 46.3
Lsat_1_v5_gn_7_54461 Lactuca sativa HOM05D001798 ORTHO05D005040 7.2e-06 55.1 125 36.0


User provided reference genes

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