Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0208900 Salix brachista HOM05D004383 ORTHO05D005050 3.3e-158 561.6 277 100.0
Sabra18G0020200 Salix brachista HOM05D004383 ORTHO05D005050 3.1e-103 379.0 281 73.7
Potri.006G266300 Populus trichocarpa HOM05D004383 ORTHO05D005050 3.0e-90 335.9 169 97.0
Potri.018G016800 Populus trichocarpa HOM05D004383 ORTHO05D005050 6.2e-88 328.2 169 94.1
Manes.16G131700 Manihot esculenta HOM05D004383 ORTHO05D005050 6.9e-87 324.7 169 93.5
Manes.03G007300 Manihot esculenta HOM05D004383 ORTHO05D005050 5.8e-86 321.6 169 92.3
Thecc.09G012700 Theobroma cacao HOM05D004383 ORTHO05D005050 1.4e-84 317.0 169 89.9
Gohir.A05G061400 Gossypium hirsutum HOM05D004383 ORTHO05D005050 1.2e-83 313.9 169 88.2
Gorai.009G064600 Gossypium raimondii HOM05D004383 ORTHO05D005050 1.2e-83 313.9 169 88.2
Ciclev10009603m.g Citrus clementina HOM05D004383 ORTHO05D005050 7.9e-83 311.2 167 89.2
Gohir.D06G105600 Gossypium hirsutum HOM05D004383 ORTHO05D005050 1.0e-82 310.8 169 88.2
COL.COLO4_18979 Corchorus olitorius HOM05D002641 ORTHO05D005050 1.3e-82 310.5 169 87.6
Gohir.D05G063900 Gossypium hirsutum HOM05D004383 ORTHO05D005050 3.0e-82 309.3 169 87.0
PGR044G2662 Punica granatum HOM05D004383 ORTHO05D005050 3.0e-82 309.3 169 86.4
Duzib187G0841 Durio zibethinus HOM05D004383 ORTHO05D005050 5.1e-82 308.5 169 87.0
Gorai.010G120200 Gossypium raimondii HOM05D004383 ORTHO05D005050 6.6e-82 308.1 169 87.0
MD15G1042900 Malus domestica HOM05D004383 ORTHO05D005050 6.6e-82 308.1 169 87.0
Aa31LG3G16320 Aethionema arabicum HOM05D004383 ORTHO05D005050 1.5e-81 307.0 166 87.3
Cpa.g.sc148.37 Carica papaya HOM05D004383 ORTHO05D005050 1.5e-81 307.0 166 88.0
Cc00_g24580 Coffea canephora HOM05D004383 ORTHO05D005050 1.5e-81 307.0 169 85.8
Eucgr.C04036 Eucalyptus grandis HOM05D004383 ORTHO05D005050 1.5e-81 307.0 169 85.2
THA.LOC104824960 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 1.5e-81 307.0 169 86.4
Duzib168G1681 Durio zibethinus HOM05D004383 ORTHO05D005050 1.9e-81 306.6 169 87.0
QL02p018464 Quercus lobata HOM05D004383 ORTHO05D005050 1.9e-81 306.6 168 87.5
Prupe.1G396200 Prunus persica HOM05D004383 ORTHO05D005050 2.5e-81 306.2 169 85.8
TWI34G1410 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 2.5e-81 306.2 169 87.0
CSS0047262 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 3.3e-81 305.8 169 85.8
CiPaw.08G004800 Carya illinoinensis HOM05D004383 ORTHO05D005050 4.3e-81 305.4 169 86.4
CiPaw.07G231900 Carya illinoinensis HOM05D004383 ORTHO05D005050 5.6e-81 305.1 169 86.4
BcaB01g06278 Brassica carinata HOM05D004383 ORTHO05D005050 7.4e-81 304.7 169 85.2
Carub.0006s0928 Capsella rubella HOM05D004383 ORTHO05D005050 7.4e-81 304.7 169 85.2
GSVIVG01035992001 Vitis vinifera HOM05D004383 ORTHO05D005050 7.4e-81 304.7 169 88.2
Atru.chr7.2584 Acer truncatum HOM05D004383 ORTHO05D005050 9.6e-81 304.3 169 87.0
Thhalv10014802m.g Eutrema salsugineum HOM05D004383 ORTHO05D005050 9.6e-81 304.3 169 85.2
Sp6g32680 Schrenkiella parvula HOM05D004383 ORTHO05D005050 9.6e-81 304.3 169 85.2
RcHm_v2.0_Chr6g0299241 Rosa chinensis HOM05D004383 ORTHO05D005050 1.3e-80 303.9 169 85.2
BcaB05g21506 Brassica carinata HOM05D004383 ORTHO05D005050 1.6e-80 303.5 169 84.6
BcaB01g05499 Brassica carinata HOM05D004383 ORTHO05D005050 2.1e-80 303.1 169 85.2
CANSAT64G0435 Cannabis sativa HOM05D004383 ORTHO05D005050 2.1e-80 303.1 169 84.6
CAN.G285.20 Capsicum annuum HOM05D004383 ORTHO05D005050 2.1e-80 303.1 169 85.8
TWI32G1179 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 2.1e-80 303.1 168 87.5
THA.LOC104799028 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 2.8e-80 302.8 169 85.2
AL6G21360 Arabidopsis lyrata HOM05D004383 ORTHO05D005050 3.6e-80 302.4 169 84.6
AT5G10780 Arabidopsis thaliana HOM05D004383 ORTHO05D005050 3.6e-80 302.4 169 84.6
FvH4_3g24420 Fragaria vesca HOM05D004383 ORTHO05D005050 3.6e-80 302.4 169 84.6
FAN21G1236 Fragaria x ananassa HOM05D004383 ORTHO05D005050 3.6e-80 302.4 169 84.6
Peaxi162Scf00045g01943 Petunia axillaris HOM05D004383 ORTHO05D005050 6.2e-80 301.6 169 84.0
FAN16G3501 Fragaria x ananassa HOM05D004383 ORTHO05D005050 8.1e-80 301.2 169 83.4
Sed0012000 Sechium edule HOM05D004383 ORTHO05D005050 8.1e-80 301.2 169 85.2
Sopen08g002600 Solanum pennellii HOM05D004383 ORTHO05D005050 1.1e-79 300.8 169 85.2
PGSC0003DMG400026285 Solanum tuberosum HOM05D004383 ORTHO05D005050 1.1e-79 300.8 169 85.2
CSS0025027 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 1.4e-79 300.4 168 86.3
CARHR202520 Cardamine hirsuta HOM05D004383 ORTHO05D005050 1.4e-79 300.4 169 84.6
MSTRG.13961 Avicennia marina HOM05D004383 ORTHO05D005050 2.4e-79 299.7 169 86.4
BolC3t13057H Brassica oleracea HOM05D004383 ORTHO05D005050 3.1e-79 299.3 166 86.1
Oeu021906.1 Olea europaea HOM05D004383 ORTHO05D005050 3.1e-79 299.3 168 84.5
SalBow8G1520 Salvia bowleyana HOM05D004383 ORTHO05D005050 4.0e-79 298.9 166 86.7
Hma1.2p1_0355F.1_g133920 Hydrangea macrophylla HOM05D004383 ORTHO05D005050 5.3e-79 298.5 169 86.4
arahy.Tifrunner.gnm1.ann1.W5C21C Arachis hypogaea HOM05D004383 ORTHO05D005050 6.9e-79 298.1 170 84.1
BcaC03g13332 Brassica carinata HOM05D004383 ORTHO05D005050 6.9e-79 298.1 170 84.1
A02p00660 Brassica napus HOM05D004383 ORTHO05D005050 6.9e-79 298.1 170 84.1
C02p04660 Brassica napus HOM05D004383 ORTHO05D005050 6.9e-79 298.1 170 84.1
Lsat_1_v5_gn_8_16540 Lactuca sativa HOM05D004383 ORTHO05D005050 6.9e-79 298.1 169 84.0
A03p04760 Brassica napus HOM05D004383 ORTHO05D005050 9.0e-79 297.7 170 84.1
Nitab4.5_0000264g0060 Nicotiana tabacum HOM05D004383 ORTHO05D005050 9.0e-79 297.7 169 84.0
Solyc08g006650.3 Solanum lycopersicum HOM05D004383 ORTHO05D005050 9.0e-79 297.7 169 84.6
arahy.Tifrunner.gnm1.ann1.S5PPFL Arachis hypogaea HOM05D004383 ORTHO05D005050 1.5e-78 297.0 170 83.5
BolC2t06425H Brassica oleracea HOM05D004383 ORTHO05D003478 1.5e-78 297.0 167 85.6
MELO3C016948.2 Cucumis melo HOM05D004383 ORTHO05D005050 1.5e-78 297.0 169 83.4
BraA02t05050Z Brassica rapa HOM05D004383 ORTHO05D005050 2.0e-78 296.6 170 83.5
ECA238G1890 Erigeron canadensis HOM05D004383 ORTHO05D005050 2.0e-78 296.6 169 82.8
SGA_v2.0_scaffold4G02162 Striga asiatica HOM05D004383 ORTHO05D005050 2.0e-78 296.6 166 88.6
Actinidia14139 Actinidia chinensis HOM05D004383 ORTHO05D005050 2.6e-78 296.2 169 85.2
Haze_21384 Corylus avellana HOM05D004383 ORTHO05D005050 2.6e-78 296.2 207 72.5
Lj7A737G42 Lonicera japonica HOM05D004383 ORTHO05D005050 3.4e-78 295.8 169 85.2
vmacro05117 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 3.4e-78 295.8 168 85.1
CSS0026414 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 4.5e-78 295.4 169 84.0
ClCG05G016150 Citrullus lanatus HOM05D004383 ORTHO05D005050 4.5e-78 295.4 169 83.4
AUR62024788 Chenopodium quinoa HOM05D004383 ORTHO05D005050 5.8e-78 295.0 169 82.8
Migut.E01443 Erythranthe guttata HOM05D004383 ORTHO05D005050 5.8e-78 295.0 169 85.2
Nitab4.5_0001362g0040 Nicotiana tabacum HOM05D004383 ORTHO05D005050 5.8e-78 295.0 171 82.5
BraA03t09816Z Brassica rapa HOM05D004383 ORTHO05D005050 7.6e-78 294.7 170 83.5
AUR62032433 Chenopodium quinoa HOM05D004383 ORTHO05D005050 7.6e-78 294.7 169 82.8
CsaV3_4G036420 Cucumis sativus L. HOM05D004383 ORTHO05D005050 9.9e-78 294.3 169 82.8
SGA_v2.0_scaffold169G38599 Striga asiatica HOM05D004383 ORTHO05D005050 1.3e-77 293.9 166 86.7
DCAR_003054 Daucus carota HOM05D004383 ORTHO05D005050 4.9e-77 292.0 185 79.5
Oeu010290.1 Olea europaea HOM05D004383 ORTHO05D005050 1.1e-76 290.8 169 81.1
C03p05470 Brassica napus HOM05D004383 ORTHO05D005050 2.4e-76 289.7 162 84.6
Ah.12g060630 Amaranthus hybridus HOM05D004383 ORTHO05D005050 3.2e-76 289.3 168 81.5
Sed0009310 Sechium edule HOM05D004383 ORTHO05D005050 3.2e-76 289.3 169 81.7
Hund25610 Selenicereus undatus HOM05D004383 ORTHO05D005050 3.2e-76 289.3 167 82.6
EL10Ac2g02480 Beta vulgaris HOM05D004383 ORTHO05D005050 4.2e-76 288.9 168 82.1
Nn3g19885 Nelumbo nucifera HOM05D004383 ORTHO05D005050 1.2e-75 287.3 169 81.7
Phvul.001G042400 Phaseolus vulgaris HOM05D004383 ORTHO05D005050 1.2e-75 287.3 170 82.4
VMungo0647G1739 Vigna mungo HOM05D004383 ORTHO05D005050 2.7e-75 286.2 170 82.4
Ca_13075_v3 Cicer arietinum L. HOM05D004383 ORTHO05D005050 3.5e-75 285.8 168 83.9
TAR625G0171 Trochodendron aralioides HOM05D004383 ORTHO05D005050 3.5e-75 285.8 169 79.9
TAR625G1552 Trochodendron aralioides HOM05D004383 ORTHO05D005050 3.5e-75 285.8 169 79.9
Rhsim07G0166500 Rhododendron simsii HOM05D004383 ORTHO05D005050 6.0e-75 285.0 191 75.4
ECA233G1452 Erigeron canadensis HOM05D004383 ORTHO05D005050 7.9e-75 284.6 162 83.3
FAN05G0819 Fragaria x ananassa HOM05D004383 ORTHO05D005050 7.9e-75 284.6 162 84.0
Medtr1g013660 Medicago truncatula HOM05D004383 ORTHO05D005050 1.0e-74 284.3 170 82.4
unitig_32.g11121 Utricularia gibba HOM05D004383 ORTHO05D005050 1.3e-74 283.9 166 83.7
FvH4_6g27370 Fragaria vesca HOM05D004383 ORTHO05D005050 1.8e-74 283.5 162 83.3
Migut.A00383 Erythranthe guttata HOM05D004383 ORTHO05D005050 2.3e-74 283.1 169 82.2
Glyma.17G222100 Glycine max HOM05D004383 ORTHO05D005050 2.3e-74 283.1 170 81.8
Nn1g03128 Nelumbo nucifera HOM05D004383 ORTHO05D005050 3.9e-74 282.3 169 82.8
FAN02G2967 Fragaria x ananassa HOM05D004383 ORTHO05D005050 5.1e-74 282.0 205 70.2
HanXRQChr12g0370101 Helianthus annuus HOM05D004383 ORTHO05D005050 8.7e-74 281.2 162 81.5
TPR.G38877 Trifolium pratense HOM05D004383 ORTHO05D005050 1.5e-73 280.4 170 80.6
HanXRQChr07g0201211 Helianthus annuus HOM05D004383 ORTHO05D005050 1.9e-73 280.0 169 79.9
Glyma.14G103800 Glycine max HOM05D004383 ORTHO05D005050 2.5e-73 279.6 170 80.6
Lalb_Chr24g0401921 Lupinus albus HOM05D004383 ORTHO05D005050 2.5e-73 279.6 171 78.4
Lj6g0009294 Lotus japonicus HOM05D004383 ORTHO05D005050 1.3e-72 277.3 171 78.9
Psat6g025120 Pisum sativum HOM05D004383 ORTHO05D005050 1.6e-72 276.9 170 80.0
FAN14G2933 Fragaria x ananassa HOM05D004383 ORTHO05D005050 2.1e-72 276.6 163 81.6
MD08G1052600 Malus domestica HOM05D004383 ORTHO05D005050 3.1e-71 272.7 169 79.3
PSO017G0706 Papaver somniferum HOM05D004383 ORTHO05D005050 2.6e-70 269.6 172 78.5
PSO170G1218 Papaver somniferum HOM05D004383 ORTHO05D005050 2.6e-70 269.6 172 78.5
MBI14_g31383_MAGBIO Magnolia biondii HOM05D004383 ORTHO05D005050 2.2e-69 266.5 169 79.3
CDE02G0236 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 4.9e-69 265.4 169 79.3
Dinv10290 Davidia involucrata HOM05D004383 ORTHO05D005050 2.5e-68 263.1 150 85.3
ATR0580G398 Amborella trichopoda HOM05D004383 ORTHO05D005050 7.1e-68 261.5 169 75.7
CDE05G2494 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 7.1e-68 261.5 169 76.9
vmacro11269 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 9.3e-68 261.2 253 56.9
SEGI_36915 Sequoiadendron giganteum HOM05D004383 ORTHO05D005050 9.6e-65 251.1 156 75.6
Sc23g0006160 Simmondsia chinensis HOM05D004383 ORTHO05D005050 9.6e-65 251.1 148 81.8
Os03g0360500 Oryza sativa ssp. japonica HOM05D004383 ORTHO05D005050 2.6e-62 243.0 170 70.6
Zm00001eb394360 Zea mays HOM05D004383 ORTHO05D005050 7.6e-62 241.5 169 69.8
SMO367G0045 Selaginella moellendorffii HOM05D004383 ORTHO05D005050 5.0e-61 238.8 156 72.4
Mapoly0039s0015 Marchantia polymorpha HOM05D004383 ORTHO05D005050 1.5e-57 227.3 156 68.6
AagrBONN_evm.TU.Sc2ySwM_368.2778 Anthoceros agrestis HOM05D004383 ORTHO05D005050 3.7e-56 222.6 162 66.7
Actinidia10531 Actinidia chinensis HOM05D004383 ORTHO05D005050 9.0e-55 218.0 169 68.0
Pp3c18_15950 Physcomitrium patens HOM05D004383 ORTHO05D005050 3.4e-54 216.1 156 65.4
BcaNung06638 Brassica carinata HOM05D004383 ORTHO05D005050 1.5e-46 190.7 127 74.8
CBR_g29297 Chara braunii HOM05D004383 ORTHO05D005050 7.7e-46 188.3 156 58.3
Aqoxy7G03322 Aquilegia oxysepala HOM05D004383 ORTHO05D005050 2.9e-45 186.4 171 59.1
Dinv01903 Davidia involucrata HOM05D004383 ORTHO05D005050 2.0e-41 173.7 100 85.0
TAR383G0062 Trochodendron aralioides HOM05D004383 ORTHO05D005050 1.5e-36 157.5 102 76.5
HPP92_021944 Vanilla planifolia HOM05D004383 ORTHO05D005050 2.3e-34 150.2 116 66.4
HPP92_021971 Vanilla planifolia HOM05D004383 ORTHO05D005050 1.4e-31 141.0 80 85.0
PRCOL_00000905 Prasinoderma coloniale HOM05D004383 ORTHO05D005050 8.5e-29 131.7 162 42.6
arahy.Tifrunner.gnm1.ann1.76P32W Arachis hypogaea HOM05D004383 ORTHO05D005050 1.0e-26 124.8 75 80.0
arahy.Tifrunner.gnm1.ann1.90HH72 Arachis hypogaea HOM05D004383 ORTHO05D005050 1.0e-26 124.8 75 80.0
MCO09G762 Micromonas commoda HOM05D004383 ORTHO05D005050 4.0e-26 122.9 166 39.8
Oeu048647.1 Olea europaea HOM05D004383 ORTHO05D005050 3.5e-22 109.8 62 85.5
CSS0012906 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 2.2e-21 107.1 54 92.6
DCAR_031730 Daucus carota HOM05D004383 ORTHO05D005050 2.9e-21 106.7 100 57.0
Medtr8g027900 Medicago truncatula HOM05D000337 ORTHO05D000297 2.9e-21 106.7 209 39.7
CSS0013447 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 1.9e-20 104.0 55 85.5
TAR383G0705 Trochodendron aralioides HOM05D004383 ORTHO05D005050 9.5e-20 101.7 57 82.5
Cfa024789 Carpinus fangiana HOM05D004383 ORTHO05D005050 4.0e-18 96.3 145 38.6
DCAR_030622 Daucus carota HOM05D001936 ORTHO05D005050 1.5e-17 94.4 63 69.8
Cre07.g351700 Chlamydomonas reinhardtii HOM05D004383 ORTHO05D005050 3.4e-17 93.2 161 34.2
Lalb_Chr15g0080471 Lupinus albus HOM05D004383 ORTHO05D005050 6.6e-13 79.0 90 47.8
Atru.chr7.2585 Acer truncatum HOM05D004383 ORTHO05D005050 8.0e-11 72.0 45 73.3
Atru.chr7.2578 Acer truncatum HOM05D004610 ORTHO05D001148 1.0e-10 71.6 51 68.6
Lalb_Chr15g0078021 Lupinus albus HOM05D004383 ORTHO05D005050 1.0e-10 71.6 88 46.6
arahy.Tifrunner.gnm1.ann1.54XXT5 Arachis hypogaea HOM05D004383 ORTHO05D005050 2.3e-10 70.5 37 86.5
C03p33160 Brassica napus HOM05D004383 ORTHO05D005050 5.2e-10 69.3 38 81.6
BolC3t15641H Brassica oleracea HOM05D004383 ORTHO05D005050 5.2e-10 69.3 38 81.6
Lalb_Chr10g0093521 Lupinus albus HOM05D004383 ORTHO05D005050 1.2e-09 68.2 38 86.8
BcaB07g33518 Brassica carinata HOM05D001184 ORTHO05D005050 2.2e-08 63.9 43 72.1
RcHm_v2.0_Chr3g0494951 Rosa chinensis HOM05D004383 ORTHO05D005050 2.9e-08 63.5 42 71.4
Lalb_Chr01g0013281 Lupinus albus HOM05D004383 ORTHO05D005050 3.7e-08 63.2 50 62.0
MD10G1133700 Malus domestica HOM05D004383 ORTHO05D005050 6.4e-08 62.4 35 77.1
MD10G1176800 Malus domestica HOM05D004383 ORTHO05D005050 2.4e-07 60.5 42 66.7
MD03G1162600 Malus domestica HOM05D004383 ORTHO05D005050 4.1e-07 59.7 43 67.4


User provided reference genes

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