Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0202600 Salix brachista HOM05D008824 ORTHO05D003125 1.0e-119 433.3 207 100.0
Potri.006G259200 Populus trichocarpa HOM05D008824 ORTHO05D003125 9.4e-65 250.8 147 85.0
Sabra18G0025300 Salix brachista HOM05D008824 ORTHO05D003125 4.9e-45 185.3 140 67.1
Potri.003G070750 Populus trichocarpa HOM05D008824 ORTHO05D003125 1.1e-44 184.1 148 65.5
Potri.003G048200 Populus trichocarpa HOM05D008824 ORTHO05D003125 6.4e-29 131.7 120 59.2
Manes.16G125900 Manihot esculenta HOM05D008824 ORTHO05D003125 5.6e-25 118.6 132 51.5
Manes.03G012100 Manihot esculenta HOM05D003969 ORTHO05D003125 2.0e-22 110.2 142 50.7
CiPaw.07G226900 Carya illinoinensis HOM05D003969 ORTHO05D003125 5.6e-17 92.0 122 49.2
COL.COLO4_18912 Corchorus olitorius HOM05D003969 ORTHO05D003125 2.0e-14 83.6 147 39.5
QL02p020337 Quercus lobata HOM05D008824 ORTHO05D003125 3.8e-13 79.3 148 38.5
THA.LOC104815009 Tarenaya hassleriana HOM05D008824 ORTHO05D003125 3.8e-13 79.3 142 40.1
TWI34G0986 Tripterygium wilfordii HOM05D003969 ORTHO05D003125 4.9e-13 79.0 126 40.5
TWI34G1900 Tripterygium wilfordii HOM05D003969 ORTHO05D003125 1.1e-12 77.8 126 42.9
Cfa013102 Carpinus fangiana HOM05D003969 ORTHO05D003125 1.4e-12 77.4 131 45.0
Haze_21463 Corylus avellana HOM05D008824 ORTHO05D003125 3.2e-12 76.3 139 43.9
Atru.chr7.2498 Acer truncatum HOM05D003969 ORTHO05D003125 2.7e-11 73.2 151 39.7
Aa31LG3G16070 Aethionema arabicum HOM05D008824 ORTHO05D003125 2.7e-11 73.2 153 33.3
THA.LOC104814116 Tarenaya hassleriana HOM05D008824 ORTHO05D003125 6.0e-11 72.0 139 34.5
Migut.A00008 Erythranthe guttata HOM05D003969 ORTHO05D003125 1.3e-10 70.9 84 47.6
Thhalv10016092m.g Eutrema salsugineum HOM05D008824 ORTHO05D003125 1.7e-10 70.5 154 35.7
PGR031G2169 Punica granatum HOM05D003969 ORTHO05D003125 5.1e-10 68.9 76 51.3
Thecc.09G019700 Theobroma cacao HOM05D003969 ORTHO05D003125 1.1e-09 67.8 133 36.8
ClCG05G016610 Citrullus lanatus HOM05D003969 ORTHO05D003125 1.9e-09 67.0 122 39.3
Cc06_g07430 Coffea canephora HOM05D003969 ORTHO05D003125 1.9e-09 67.0 147 38.1
Hma1.2p1_0228F.1_g096590 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 2.5e-09 66.6 88 43.2
Nn2g12243 Nelumbo nucifera HOM05D003969 ORTHO05D003125 2.5e-09 66.6 125 41.6
BcaC03g13348 Brassica carinata HOM05D008824 ORTHO05D003125 5.6e-09 65.5 84 46.4
C02p04840 Brassica napus HOM05D008824 ORTHO05D003125 5.6e-09 65.5 84 46.4
TAR636G2249 Trochodendron aralioides HOM05D003969 ORTHO05D003125 7.3e-09 65.1 130 38.5
BcaB01g06316 Brassica carinata HOM05D008824 ORTHO05D003125 1.2e-08 64.3 152 32.2
BcaNung07098 Brassica carinata HOM05D008824 ORTHO05D003125 1.2e-08 64.3 152 30.3
A03p04850 Brassica napus HOM05D008824 ORTHO05D003125 1.6e-08 63.9 151 32.5
BraA03t09824Z Brassica rapa HOM05D008824 ORTHO05D003125 1.6e-08 63.9 151 32.5
TAR383G0074 Trochodendron aralioides HOM05D003969 ORTHO05D003125 1.6e-08 63.9 94 44.7
Actinidia21911 Actinidia chinensis HOM05D003969 ORTHO05D003125 2.1e-08 63.5 135 40.0
Carub.0006s0958 Capsella rubella HOM05D008824 ORTHO05D003125 2.8e-08 63.2 162 29.0
Peaxi162Scf00391g00017 Petunia axillaris HOM05D003969 ORTHO05D003125 2.8e-08 63.2 131 36.6
BcaB01g05491 Brassica carinata HOM05D008824 ORTHO05D003125 4.7e-08 62.4 151 30.5
BolC3t13066H Brassica oleracea HOM05D008824 ORTHO05D003125 4.7e-08 62.4 151 30.5
CsaV3_4G036890 Cucumis sativus L. HOM05D003969 ORTHO05D003125 4.7e-08 62.4 130 37.7
BraA10t44721Z Brassica rapa HOM05D008824 ORTHO05D003125 6.2e-08 62.0 150 28.7
CARHR202220 Cardamine hirsuta HOM05D008824 ORTHO05D003125 6.2e-08 62.0 98 36.7
TAR625G0404 Trochodendron aralioides HOM05D003969 ORTHO05D003125 6.2e-08 62.0 138 36.2
AL6G21690 Arabidopsis lyrata HOM05D008824 ORTHO05D003125 8.1e-08 61.6 94 41.5
BcaC04g19263 Brassica carinata HOM05D008824 ORTHO05D003125 8.1e-08 61.6 151 28.5
A10p26630 Brassica napus HOM05D008824 ORTHO05D003125 8.1e-08 61.6 151 28.5
C09p65790 Brassica napus HOM05D008824 ORTHO05D003125 8.1e-08 61.6 151 28.5
BolC9t59401H Brassica oleracea HOM05D008824 ORTHO05D003125 8.1e-08 61.6 151 28.5
Cpa.g.sc187.25 Carica papaya HOM05D008824 ORTHO05D003125 8.1e-08 61.6 77 44.2
Actinidia04245 Actinidia chinensis HOM05D003969 ORTHO05D003125 1.1e-07 61.2 162 37.0
Gohir.D07G034000 Gossypium hirsutum HOM05D003969 ORTHO05D003125 1.1e-07 61.2 128 35.9
Gorai.001G035600 Gossypium raimondii HOM05D003969 ORTHO05D003125 1.1e-07 61.2 128 35.9
Hma1.2p1_1784F.1_g302146 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 1.1e-07 61.2 121 38.8
Hma1.2p1_1784F.1_g302150 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 1.1e-07 61.2 121 38.8
AT5G11070 Arabidopsis thaliana HOM05D008824 ORTHO05D003125 1.4e-07 60.8 151 31.1
A02p00820 Brassica napus HOM05D008824 ORTHO05D003125 1.4e-07 60.8 90 41.1
BraA02t05065Z Brassica rapa HOM05D008824 ORTHO05D003125 1.4e-07 60.8 90 41.1
Lsat_1_v5_gn_8_63081 Lactuca sativa HOM05D003969 ORTHO05D003125 1.4e-07 60.8 155 33.5
Ciclev10009935m.g Citrus clementina HOM05D003969 ORTHO05D003125 1.8e-07 60.5 132 37.1
Migut.K00379 Erythranthe guttata HOM05D003969 ORTHO05D003125 1.8e-07 60.5 60 51.7
Oeu010893.1 Olea europaea HOM05D003969 ORTHO05D003125 1.8e-07 60.5 73 46.6
C03p05580 Brassica napus HOM05D008824 ORTHO05D003125 2.4e-07 60.1 92 41.3
Hma1.2p1_0182F.1_g080470 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 2.4e-07 60.1 139 38.1
Hma1.2p1_2744F.1_g327795 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 2.4e-07 60.1 139 38.1
Sp6g32430 Schrenkiella parvula HOM05D008824 ORTHO05D003125 2.4e-07 60.1 151 31.8
BolC2t06442H Brassica oleracea HOM05D008824 ORTHO05D003125 3.1e-07 59.7 82 42.7
Gohir.A05G056900 Gossypium hirsutum HOM05D003969 ORTHO05D003125 3.1e-07 59.7 133 33.8
Gohir.A07G030200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 3.1e-07 59.7 74 44.6
RcHm_v2.0_Chr2g0086701 Rosa chinensis HOM05D003969 ORTHO05D003125 3.1e-07 59.7 142 31.7
TAR626G0029 Trochodendron aralioides HOM05D003969 ORTHO05D003125 3.1e-07 59.7 125 37.6
Gohir.D05G059000 Gossypium hirsutum HOM05D003969 ORTHO05D003125 4.0e-07 59.3 86 40.7
Gorai.009G060100 Gossypium raimondii HOM05D003969 ORTHO05D003125 6.9e-07 58.5 86 40.7
Sopen07g003200 Solanum pennellii HOM05D003969 ORTHO05D003125 6.9e-07 58.5 155 33.5
Dinv41425 Davidia involucrata HOM05D003969 ORTHO05D003125 9.0e-07 58.2 133 39.1
BcaNung01909 Brassica carinata HOM05D008824 ORTHO05D003125 1.2e-06 57.8 95 41.1
BcaNung01911 Brassica carinata HOM05D008824 ORTHO05D003125 1.2e-06 57.8 95 41.1
MBI14_g03633_MAGBIO Magnolia biondii HOM05D003969 ORTHO05D003125 1.2e-06 57.8 132 31.1
CSS0007982 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 1.5e-06 57.4 85 37.6
Eucgr.C01687 Eucalyptus grandis HOM05D003969 ORTHO05D003125 1.5e-06 57.4 71 47.9
Lalb_Chr22g0361461 Lupinus albus HOM05D013068 ORTHO05D003125 1.5e-06 57.4 134 31.3
Nn8g39714 Nelumbo nucifera HOM05D003969 ORTHO05D003125 1.5e-06 57.4 142 35.9
SalBow1G8303 Salvia bowleyana HOM05D003969 ORTHO05D003125 1.5e-06 57.4 128 35.9
Cc08_g00220 Coffea canephora HOM05D003969 ORTHO05D003125 2.0e-06 57.0 136 35.3
Medtr1g012950 Medicago truncatula HOM05D013068 ORTHO05D003125 2.0e-06 57.0 135 32.6
Oeu057292.1 Olea europaea HOM05D003969 ORTHO05D003125 2.0e-06 57.0 128 32.8
Rhsim03G0254600 Rhododendron simsii HOM05D000320 ORTHO05D000532 2.0e-06 57.0 144 40.3
CANSAT01G2013 Cannabis sativa HOM05D008824 ORTHO05D003125 2.6e-06 56.6 125 36.8
FAN15G0756 Fragaria x ananassa HOM05D019695 ORTHO05D022679 2.6e-06 56.6 110 32.7
Gohir.A13G203200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 2.6e-06 56.6 133 38.3
Gorai.013G237600 Gossypium raimondii HOM05D003969 ORTHO05D003125 2.6e-06 56.6 133 38.3
Sc08g0005750 Simmondsia chinensis HOM05D003969 ORTHO05D003125 2.6e-06 56.6 132 34.8
Gohir.D13G208500 Gossypium hirsutum HOM05D003969 ORTHO05D003125 3.4e-06 56.2 133 38.3
Psat4g033280 Pisum sativum HOM05D003969 ORTHO05D003125 3.4e-06 56.2 125 34.4
Solyc07g007150.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 3.4e-06 56.2 155 32.9
MSTRG.26029 Avicennia marina HOM05D003969 ORTHO05D003125 4.4e-06 55.8 83 42.2
EL10Ac2g04157 Beta vulgaris HOM05D003969 ORTHO05D003125 4.4e-06 55.8 70 45.7
Dinv15887 Davidia involucrata HOM05D003969 ORTHO05D003125 4.4e-06 55.8 81 43.2
Eucgr.C01695 Eucalyptus grandis HOM05D003969 ORTHO05D003125 5.8e-06 55.5 130 36.2
FAN20G0523 Fragaria x ananassa HOM05D019695 ORTHO05D022679 5.8e-06 55.5 113 34.5
MSTRG.10635 Avicennia marina HOM05D003969 ORTHO05D003125 7.6e-06 55.1 120 37.5
Sed0009487 Sechium edule HOM05D003969 ORTHO05D003125 7.6e-06 55.1 56 51.8
Sc23g0006550 Simmondsia chinensis HOM05D003969 ORTHO05D003125 7.6e-06 55.1 73 45.2
TPR.G38870 Trifolium pratense HOM05D013068 ORTHO05D003125 7.6e-06 55.1 143 29.4
Eucgr.C01690 Eucalyptus grandis HOM05D003969 ORTHO05D003125 9.9e-06 54.7 81 42.0
Lsat_1_v5_gn_5_39780 Lactuca sativa HOM05D003969 ORTHO05D003125 9.9e-06 54.7 98 38.8


User provided reference genes

Program Settings