Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0196500 Salix brachista HOM05D002238 ORTHO05D007272 7.0e-234 813.5 399 100.0
Potri.006G251400 Populus trichocarpa HOM05D002238 ORTHO05D007272 5.6e-207 724.2 427 85.2
Manes.16G120100 Manihot esculenta HOM05D002238 ORTHO05D007272 3.6e-145 518.8 417 65.0
QL09p012798 Quercus lobata HOM05D002238 ORTHO05D007272 3.6e-137 492.3 427 59.3
Haze_00046 Corylus avellana HOM05D002238 ORTHO05D007272 1.2e-135 487.3 425 58.8
Duzib168G0728 Durio zibethinus HOM05D002238 ORTHO05D007272 4.4e-135 485.3 426 58.5
COL.COLO4_00195 Corchorus olitorius HOM05D002238 ORTHO05D007272 6.3e-134 481.5 426 58.2
Dinv30168 Davidia involucrata HOM05D002238 ORTHO05D007272 7.7e-132 474.6 425 59.3
Prupe.1G474900 Prunus persica HOM05D002238 ORTHO05D007272 1.1e-130 470.7 428 56.5
MD08G1146200 Malus domestica HOM05D002238 ORTHO05D007272 4.2e-130 468.8 428 57.0
Ciclev10010344m.g Citrus clementina HOM05D002238 ORTHO05D007272 6.1e-129 464.9 426 57.5
Gohir.A09G019700 Gossypium hirsutum HOM05D002238 ORTHO05D007272 1.4e-128 463.8 426 56.1
Gohir.1Z049673 Gossypium hirsutum HOM05D002238 ORTHO05D007272 1.2e-127 460.7 426 56.1
Gohir.D09G019000 Gossypium hirsutum HOM05D002238 ORTHO05D007272 1.2e-127 460.7 426 56.1
RcHm_v2.0_Chr6g0298391 Rosa chinensis HOM05D002238 ORTHO05D007272 9.8e-127 457.6 420 55.5
Gorai.006G022700 Gossypium raimondii HOM05D002238 ORTHO05D007272 4.9e-126 455.3 426 55.9
FvH4_2g29530 Fragaria vesca HOM05D002238 ORTHO05D007272 8.3e-126 454.5 425 56.2
TAR625G0243 Trochodendron aralioides HOM05D002238 ORTHO05D007272 2.4e-125 453.0 426 56.3
Thecc.09G149800 Theobroma cacao HOM05D002238 ORTHO05D007272 3.1e-125 452.6 404 58.4
TWI32G0967 Tripterygium wilfordii HOM05D002238 ORTHO05D007272 4.1e-125 452.2 425 55.1
FAN24G3345 Fragaria x ananassa HOM05D002238 ORTHO05D007272 9.1e-125 451.1 425 56.0
CANSAT54G2252 Cannabis sativa HOM05D002238 ORTHO05D007272 1.6e-124 450.3 428 55.1
Lj8C25T21 Lonicera japonica HOM05D002238 ORTHO05D007272 2.0e-124 449.9 403 58.3
CiPaw.05G262300 Carya illinoinensis HOM05D002238 ORTHO05D007272 2.7e-124 449.5 425 56.0
FAN27G0629 Fragaria x ananassa HOM05D002238 ORTHO05D007272 1.9e-122 443.4 425 55.1
CSS0032500 Camellia sinensis var. sinensis HOM05D002238 ORTHO05D007272 9.5e-122 441.0 426 54.9
FAN20G0928 Fragaria x ananassa HOM05D002238 ORTHO05D007272 2.8e-121 439.5 425 54.8
ClCG05G017070 Citrullus lanatus HOM05D002238 ORTHO05D007272 6.1e-121 438.3 429 55.0
Nn2g11964 Nelumbo nucifera HOM05D002238 ORTHO05D007272 1.8e-117 426.8 425 52.2
Rhsim09G0014000 Rhododendron simsii HOM05D002238 ORTHO05D007272 1.8e-117 426.8 422 53.1
Cpa.g.sc533.2 Carica papaya HOM05D002238 ORTHO05D007272 1.6e-116 423.7 396 55.6
Nitab4.5_0004440g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.6e-116 423.7 423 53.2
Sc11g0007780 Simmondsia chinensis HOM05D002238 ORTHO05D007272 1.6e-116 423.7 422 51.2
Oeu034743.2 Olea europaea HOM05D002238 ORTHO05D007272 2.7e-116 422.9 427 53.6
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 5.0e-115 418.7 383 57.7
Actinidia13250 Actinidia chinensis HOM05D002238 ORTHO05D007272 1.5e-114 417.2 405 55.1
Rhsim02G0198300 Rhododendron simsii HOM05D002238 ORTHO05D007272 1.5e-114 417.2 424 52.4
Sed0000756 Sechium edule HOM05D002238 ORTHO05D007272 1.5e-114 417.2 431 52.9
Cc08_g00970 Coffea canephora HOM05D002238 ORTHO05D007272 1.9e-114 416.8 425 52.0
Rhsim02G0195500 Rhododendron simsii HOM05D002238 ORTHO05D007272 2.5e-114 416.4 424 52.4
Eucgr.C01786 Eucalyptus grandis HOM05D002238 ORTHO05D007272 1.6e-113 413.7 397 52.6
MBI04_g24206_MAGBIO Magnolia biondii HOM05D002238 ORTHO05D007272 1.6e-113 413.7 414 51.9
Aqoxy3G03159 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 2.1e-113 413.3 419 51.6
PGSC0003DMG400020787 Solanum tuberosum HOM05D002238 ORTHO05D007272 2.8e-113 412.9 424 51.7
Peaxi162Scf00327g00039 Petunia axillaris HOM05D002238 ORTHO05D007272 3.1e-112 409.5 418 51.7
Sopen08g016790 Solanum pennellii HOM05D002238 ORTHO05D007272 5.2e-112 408.7 424 51.9
MELO3C003684.2 Cucumis melo HOM05D002238 ORTHO05D007272 8.9e-112 407.9 433 51.3
Peaxi162Scf00108g00063 Petunia axillaris HOM05D002238 ORTHO05D007272 1.2e-111 407.5 423 50.6
Solyc08g061450.3 Solanum lycopersicum HOM05D002238 ORTHO05D007272 5.8e-111 405.2 411 52.3
CsaV3_3G046550 Cucumis sativus L. HOM05D002238 ORTHO05D007272 1.3e-110 404.1 431 51.5
Lj5g0011751 Lotus japonicus HOM05D002238 ORTHO05D007272 4.9e-110 402.1 419 52.7
EL10Ac2g04715 Beta vulgaris HOM05D002238 ORTHO05D007272 3.5e-108 396.0 428 49.8
Nitab4.5_0009247g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 7.8e-108 394.8 410 52.2
AUR62012126 Chenopodium quinoa HOM05D002238 ORTHO05D007272 3.0e-107 392.9 400 51.8
Ca_12577_v3 Cicer arietinum L. HOM05D002238 ORTHO05D007272 1.1e-106 391.0 420 50.2
AUR62040710 Chenopodium quinoa HOM05D002238 ORTHO05D007272 1.5e-106 390.6 400 51.0
VMungo1215G1712 Vigna mungo HOM05D002238 ORTHO05D007272 1.6e-105 387.1 392 53.1
Medtr1g031820 Medicago truncatula HOM05D002238 ORTHO05D001984 2.8e-105 386.3 393 53.2
PGR042G2797 Punica granatum HOM05D002238 ORTHO05D007272 4.7e-105 385.6 422 49.1
Ah.16g102520 Amaranthus hybridus HOM05D002238 ORTHO05D007272 8.1e-105 384.8 425 48.9
THA.LOC104810431 Tarenaya hassleriana HOM05D002238 ORTHO05D007272 3.1e-104 382.9 437 48.3
Lalb_Chr25g0279781 Lupinus albus HOM05D002238 ORTHO05D007272 2.0e-103 380.2 418 50.7
TPR.G36878 Trifolium pratense HOM05D002238 ORTHO05D001984 2.0e-103 380.2 420 50.7
Glyma.05G173000 Glycine max HOM05D002238 ORTHO05D007272 2.6e-103 379.8 387 52.5
DCAR_006233 Daucus carota HOM05D002238 ORTHO05D007272 5.8e-103 378.6 371 52.8
AL6G37300 Arabidopsis lyrata HOM05D002238 ORTHO05D007272 1.4e-101 374.0 426 48.1
CARHR187880 Cardamine hirsuta HOM05D002238 ORTHO05D007272 3.2e-101 372.9 426 47.7
Sp2g22030 Schrenkiella parvula HOM05D002238 ORTHO05D007272 7.1e-101 371.7 424 47.4
Migut.A00055 Erythranthe guttata HOM05D002238 ORTHO05D007272 3.5e-100 369.4 392 49.5
C07p42320 Brassica napus HOM05D002238 ORTHO05D007272 1.3e-99 367.5 425 47.5
Thhalv10005310m.g Eutrema salsugineum HOM05D002238 ORTHO05D007272 1.7e-99 367.1 424 46.7
PSO349G0250 Papaver somniferum HOM05D002238 ORTHO05D007272 1.7e-99 367.1 429 45.9
BolC7t44761H Brassica oleracea HOM05D002238 ORTHO05D007272 2.3e-99 366.7 425 47.5
Carub.0006s2336 Capsella rubella HOM05D002238 ORTHO05D007272 3.0e-99 366.3 425 47.1
AT5G25500 Arabidopsis thaliana HOM05D002238 ORTHO05D007272 2.5e-98 363.2 426 46.9
PSO017G3814 Papaver somniferum HOM05D002238 ORTHO05D007272 3.3e-98 362.8 431 45.7
Phvul.003G021200 Phaseolus vulgaris HOM05D002238 ORTHO05D007272 3.3e-98 362.8 376 52.1
Aa31LG11G4600 Aethionema arabicum HOM05D002238 ORTHO05D007272 4.3e-98 362.5 428 47.2
arahy.Tifrunner.gnm1.ann1.U1RD55 Arachis hypogaea HOM05D002238 ORTHO05D007272 1.6e-97 360.5 405 49.6
SGA_v2.0_scaffold20G09144 Striga asiatica HOM05D002238 ORTHO05D007272 4.7e-97 359.0 436 45.6
Peaxi162Scf00108g00056 Petunia axillaris HOM05D002238 ORTHO05D007272 1.1e-96 357.8 373 52.5
Psat6g044800 Pisum sativum HOM05D002238 ORTHO05D001984 1.4e-96 357.5 401 49.6
HPP92_000893 Vanilla planifolia HOM05D002238 ORTHO05D007272 4.9e-94 349.0 402 46.5
C02p59480 Brassica napus HOM05D002238 ORTHO05D007272 5.4e-93 345.5 389 47.6
BolC2t12011H Brassica oleracea HOM05D002238 ORTHO05D007272 4.6e-92 342.4 389 47.3
Peaxi162Scf00002g00372 Petunia axillaris HOM05D002238 ORTHO05D003453 4.6e-92 342.4 396 48.7
A02p39700 Brassica napus HOM05D002238 ORTHO05D007272 7.8e-92 341.7 397 46.9
Lsat_1_v5_gn_5_105001 Lactuca sativa HOM05D002238 ORTHO05D007272 1.0e-91 341.3 402 48.3
arahy.Tifrunner.gnm1.ann1.V2KEMD Arachis hypogaea HOM05D002238 ORTHO05D007272 3.0e-91 339.7 371 51.2
BraA02t08935Z Brassica rapa HOM05D002238 ORTHO05D007272 3.9e-91 339.3 389 46.8
arahy.Tifrunner.gnm1.ann1.TBR9XZ Arachis hypogaea HOM05D002238 ORTHO05D007272 9.6e-90 334.7 369 50.1
SHI18572 Sapria himalayana HOM05D002238 ORTHO05D007272 1.2e-89 334.3 391 45.8
arahy.Tifrunner.gnm1.ann1.H3G4DQ Arachis hypogaea HOM05D002238 ORTHO05D007272 1.6e-89 334.0 364 51.1
arahy.Tifrunner.gnm1.ann1.BAI8MS Arachis hypogaea HOM05D002238 ORTHO05D007272 6.2e-89 332.0 363 51.0
arahy.Tifrunner.gnm1.ann1.NZP3ZD Arachis hypogaea HOM05D002238 ORTHO05D007272 1.4e-88 330.9 360 51.4
GSVIVG01035523001 Vitis vinifera HOM05D002238 ORTHO05D007272 5.2e-88 328.9 401 47.9
unitig_32.g11479 Utricularia gibba HOM05D002238 ORTHO05D007272 1.3e-86 324.3 381 45.7
arahy.Tifrunner.gnm1.ann1.Z0G856 Arachis hypogaea HOM05D002238 ORTHO05D007272 1.6e-84 317.4 354 50.6
HanXRQChr13g0402681 Helianthus annuus HOM05D002238 ORTHO05D007272 1.5e-82 310.8 389 46.3
QL01p053808 Quercus lobata HOM05D002238 ORTHO05D007272 2.2e-78 297.0 257 61.9
Nitab4.5_0009119g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.2e-76 291.2 326 50.9
BraA06t26543Z Brassica rapa HOM05D002238 ORTHO05D007272 8.7e-75 285.0 301 50.8
Peaxi162Scf00365g00022 Petunia axillaris HOM05D002238 ORTHO05D007272 6.9e-72 275.4 413 41.9
Atru.chr7.2387 Acer truncatum HOM05D002238 ORTHO05D007272 2.2e-70 270.4 174 74.7
Nitab4.5_0017994g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.8e-64 250.8 295 49.8
QL10p065634 Quercus lobata HOM05D002238 ORTHO05D007272 2.9e-62 243.4 254 52.4
ATR1156G046 Amborella trichopoda HOM05D002238 ORTHO05D007272 6.5e-62 242.3 296 45.9
MD15G1119600 Malus domestica HOM05D002238 ORTHO05D007272 1.1e-61 241.5 193 63.2
Glyma.09G122801 Glycine max HOM05D002238 ORTHO05D007272 7.1e-61 238.8 197 60.4
Zm00001eb090760 Zea mays HOM05D002238 ORTHO05D007272 1.5e-58 231.1 300 43.0
Duzib187G0736 Durio zibethinus HOM05D002238 ORTHO05D007272 5.7e-58 229.2 180 62.8
ECA233G3411 Erigeron canadensis HOM05D002238 ORTHO05D007272 3.1e-56 223.4 197 56.9
Aqoxy5G03332 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 2.0e-55 220.7 288 42.4
MD15G1122300 Malus domestica HOM05D002238 ORTHO05D007272 2.2e-54 217.2 277 45.1
Os11g0207300 Oryza sativa ssp. japonica HOM05D002238 ORTHO05D007272 5.0e-54 216.1 417 33.1
Nitab4.5_0004440g0040 Nicotiana tabacum HOM05D002238 ORTHO05D007272 4.6e-52 209.5 169 62.1
BcaNung07110 Brassica carinata HOM05D002238 ORTHO05D007272 6.1e-52 209.1 178 57.9
SEGI_41370 Sequoiadendron giganteum HOM05D002238 ORTHO05D007272 1.5e-50 204.5 388 32.5
Atru.chr7.2264 Acer truncatum HOM05D002238 ORTHO05D007272 3.7e-49 199.9 180 55.6
QL10p065406 Quercus lobata HOM05D002238 ORTHO05D007272 1.0e-46 191.8 227 48.0
SalBow7G3196 Salvia bowleyana HOM05D002238 ORTHO05D007272 2.1e-44 184.1 372 32.0
Nitab4.5_0011728g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 4.6e-44 183.0 296 38.5
SalBow6G2105 Salvia bowleyana HOM05D002238 ORTHO05D007272 6.3e-41 172.6 378 31.5
Nitab4.5_0012587g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.0e-39 167.5 252 40.5
Peaxi162Scf00108g00048 Petunia axillaris HOM05D002238 ORTHO05D007272 2.6e-39 167.2 189 51.9
BcaB07g29994 Brassica carinata HOM05D002238 ORTHO05D007272 3.3e-34 150.2 177 48.0
MD15G1118500 Malus domestica HOM05D002238 ORTHO05D007272 1.1e-32 145.2 126 57.9
Nitab4.5_0013543g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.8e-32 144.4 110 67.3
Peaxi162Scf00015g02010 Petunia axillaris HOM05D002238 ORTHO05D004044 7.7e-31 139.0 153 52.9
Sabra16G0078000 Salix brachista HOM05D001558 ORTHO05D003061 1.8e-24 117.9 123 57.7
A06p36210 Brassica napus HOM05D002238 ORTHO05D007272 2.4e-24 117.5 189 40.2
Nitab4.5_0011728g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 5.3e-24 116.3 113 52.2
Atru.chr7.2385 Acer truncatum HOM05D002238 ORTHO05D026268 4.5e-23 113.2 99 52.5
Nitab4.5_0012587g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.3e-22 111.7 113 50.4
Nitab4.5_0011591g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.4e-19 101.7 85 64.7
Nitab4.5_0002007g0110 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.0e-18 97.8 86 61.6
Nitab4.5_0002007g0090 Nicotiana tabacum HOM05D002238 ORTHO05D007272 8.3e-17 92.4 188 34.6
Nitab4.5_0002007g0100 Nicotiana tabacum HOM05D002238 ORTHO05D007272 5.9e-15 86.3 88 50.0
Sabra18G0031600 Salix brachista HOM05D002238 ORTHO05D026268 7.2e-13 79.3 73 60.3
Nitab4.5_0011591g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 3.0e-11 73.9 72 50.0
Medtr3g118420 Medicago truncatula HOM05D002238 ORTHO05D026268 3.4e-10 70.5 86 43.0
Peaxi162Scf00015g02018 Petunia axillaris HOM05D002238 ORTHO05D026268 3.5e-07 60.5 89 33.7
Actinidia22361 Actinidia chinensis HOM05D002238 ORTHO05D055889 2.9e-06 57.4 52 55.8


User provided reference genes

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