Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0191900 Salix brachista HOM05D007649 ORTHO05D009668 4.9e-35 150.6 77 100.0
Potri.006G245100 Populus trichocarpa HOM05D007649 ORTHO05D009668 2.6e-28 128.3 67 95.5
Potri.012G125000 Populus trichocarpa HOM05D007649 ORTHO05D009668 4.9e-27 124.0 67 94.0
QL12p031020 Quercus lobata HOM05D007649 ORTHO05D009668 1.4e-18 95.9 65 73.8
Manes.16G069200 Manihot esculenta HOM05D007649 ORTHO05D009668 3.2e-18 94.7 66 72.7
TWI63G0355 Tripterygium wilfordii HOM05D007649 ORTHO05D009668 3.2e-18 94.7 64 71.9
Dinv30235 Davidia involucrata HOM05D007649 ORTHO05D009668 5.5e-18 94.0 65 72.3
Atru.chr7.2308 Acer truncatum HOM05D007649 ORTHO05D009668 7.2e-18 93.6 68 69.1
Gohir.D07G028200 Gossypium hirsutum HOM05D007649 ORTHO05D009668 1.6e-17 92.4 64 71.9
Gorai.001G029500 Gossypium raimondii HOM05D007649 ORTHO05D009668 1.6e-17 92.4 64 71.9
HanXRQChr10g0313021 Helianthus annuus HOM05D007649 ORTHO05D009668 2.1e-17 92.0 68 66.2
Lsat_1_v5_gn_6_8481 Lactuca sativa HOM05D007649 ORTHO05D009668 3.6e-17 91.3 68 69.1
CiPaw.08G016800 Carya illinoinensis HOM05D007649 ORTHO05D009668 4.6e-17 90.9 64 71.9
ECA233G5733 Erigeron canadensis HOM05D007649 ORTHO05D009668 7.9e-17 90.1 68 63.2
Duzib150G1676 Durio zibethinus HOM05D007649 ORTHO05D009668 1.0e-16 89.7 65 70.8
TAR383G0510 Trochodendron aralioides HOM05D007649 ORTHO05D009668 1.0e-16 89.7 65 70.8
Haze_21646 Corylus avellana HOM05D007649 ORTHO05D009668 1.3e-16 89.4 71 69.0
CSS0042406 Camellia sinensis var. sinensis HOM05D007649 ORTHO05D009668 5.1e-16 87.4 62 69.4
Nn2g11782 Nelumbo nucifera HOM05D007649 ORTHO05D009668 5.1e-16 87.4 65 67.7
Duzib168G0100 Durio zibethinus HOM05D007649 ORTHO05D009668 6.7e-16 87.0 66 69.7
TWI34G1739 Tripterygium wilfordii HOM05D007649 ORTHO05D009668 6.7e-16 87.0 70 62.9
Cpa.g.sc205.32 Carica papaya HOM05D007649 ORTHO05D009668 8.7e-16 86.7 64 65.6
Eucgr.C02878 Eucalyptus grandis HOM05D007649 ORTHO05D009668 8.7e-16 86.7 67 62.7
PGR044G0128 Punica granatum HOM05D007649 ORTHO05D009668 1.5e-15 85.9 65 61.5
GSVIVG01035747001 Vitis vinifera HOM05D007649 ORTHO05D009668 1.5e-15 85.9 64 65.6
Oeu033993.1 Olea europaea HOM05D007649 ORTHO05D009668 1.9e-15 85.5 65 66.2
Oeu033995.1 Olea europaea HOM05D007649 ORTHO05D009668 1.9e-15 85.5 65 66.2
PSO063G4106 Papaver somniferum HOM05D007649 ORTHO05D009668 1.9e-15 85.5 66 68.2
MBI04_g10458_MAGBIO Magnolia biondii HOM05D007649 ORTHO05D009668 2.5e-15 85.1 74 64.9
Rhsim07G0149600 Rhododendron simsii HOM05D007649 ORTHO05D009668 3.3e-15 84.7 72 59.7
Nitab4.5_0012591g0010 Nicotiana tabacum HOM05D007649 ORTHO05D009668 5.7e-15 84.0 68 60.3
Actinidia13297 Actinidia chinensis HOM05D007649 ORTHO05D009668 7.4e-15 83.6 65 66.2
CARHR187800 Cardamine hirsuta HOM05D007649 ORTHO05D009668 7.4e-15 83.6 65 63.1
CANSAT25G0191 Cannabis sativa HOM05D007649 ORTHO05D009668 9.7e-15 83.2 65 64.6
CAN.G1384.1 Capsicum annuum HOM05D007649 ORTHO05D009668 1.6e-14 82.4 68 60.3
Ciclev10010030m.g Citrus clementina HOM05D007649 ORTHO05D009668 2.2e-14 82.0 65 66.2
Sed0022915 Sechium edule HOM05D007649 ORTHO05D009668 2.2e-14 82.0 65 64.6
MELO3C003657.2 Cucumis melo HOM05D007649 ORTHO05D009668 2.8e-14 81.6 65 64.6
CsaV3_3G046810 Cucumis sativus L. HOM05D007649 ORTHO05D009668 2.8e-14 81.6 65 64.6
Nitab4.5_0000250g0070 Nicotiana tabacum HOM05D007649 ORTHO05D009668 3.7e-14 81.3 68 57.4
ClCG05G017300 Citrullus lanatus HOM05D007649 ORTHO05D009668 6.3e-14 80.5 65 63.1
AL6G37400 Arabidopsis lyrata HOM05D007649 ORTHO05D009668 8.2e-14 80.1 66 60.6
Migut.N01074 Erythranthe guttata HOM05D007649 ORTHO05D009668 1.1e-13 79.7 64 62.5
Aqoxy7G01751 Aquilegia oxysepala HOM05D007649 ORTHO05D009668 1.4e-13 79.3 65 61.5
AT5G25570 Arabidopsis thaliana HOM05D007649 ORTHO05D009668 1.4e-13 79.3 66 60.6
A06p36270 Brassica napus HOM05D007649 ORTHO05D009668 1.8e-13 79.0 65 60.0
BolC7t44754H Brassica oleracea HOM05D007649 ORTHO05D009668 1.8e-13 79.0 69 58.0
BraA06t26549Z Brassica rapa HOM05D007649 ORTHO05D009668 1.8e-13 79.0 65 60.0
Carub.0006s2344 Capsella rubella HOM05D007649 ORTHO05D009668 1.8e-13 79.0 64 62.5
Thhalv10005188m.g Eutrema salsugineum HOM05D007649 ORTHO05D009668 1.8e-13 79.0 65 60.0
THA.LOC104799213 Tarenaya hassleriana HOM05D007649 ORTHO05D009668 4.1e-13 77.8 64 60.9
Sopen08g021900 Solanum pennellii HOM05D007649 ORTHO05D009668 5.3e-13 77.4 68 54.4
Sp2g21960 Schrenkiella parvula HOM05D007649 ORTHO05D009668 6.9e-13 77.0 65 58.5
Prupe.1G464700 Prunus persica HOM05D007649 ORTHO05D009668 9.1e-13 76.6 65 56.9
Peaxi162Scf00105g01010 Petunia axillaris HOM05D007649 ORTHO05D009668 1.2e-12 76.3 68 52.9
Sed0003009 Sechium edule HOM05D007649 ORTHO05D009668 1.2e-12 76.3 65 61.5
Cc08_g08160 Coffea canephora HOM05D007649 ORTHO05D009668 1.5e-12 75.9 65 53.8
FAN10G0583 Fragaria x ananassa HOM05D007649 ORTHO05D009668 1.5e-12 75.9 66 56.1
MD08G1134800 Malus domestica HOM05D007649 ORTHO05D009668 1.5e-12 75.9 63 58.7
Aa31LG11G4690 Aethionema arabicum HOM05D007649 ORTHO05D009668 2.0e-12 75.5 65 60.0
FvH4_7g03290 Fragaria vesca HOM05D007649 ORTHO05D009668 2.0e-12 75.5 66 56.1
Solyc08g067980.3 Solanum lycopersicum HOM05D007649 ORTHO05D009668 2.6e-12 75.1 63 55.6
EL10Ac2g02528 Beta vulgaris HOM05D007649 ORTHO05D009668 3.4e-12 74.7 67 58.2
TPR.G12493 Trifolium pratense HOM05D007649 ORTHO05D009668 5.9e-12 73.9 64 62.5
arahy.Tifrunner.gnm1.ann1.0NF80D Arachis hypogaea HOM05D007649 ORTHO05D009668 1.0e-11 73.2 64 59.4
arahy.Tifrunner.gnm1.ann1.3N1A5Y Arachis hypogaea HOM05D007649 ORTHO05D009668 1.0e-11 73.2 64 59.4
CDE05G1266 Ceratophyllum demersum HOM05D007649 ORTHO05D009668 1.3e-11 72.8 64 62.5
Lj1g0000027 Lotus japonicus HOM05D007649 ORTHO05D009668 1.7e-11 72.4 64 57.8
Sc09g0008910 Simmondsia chinensis HOM05D007649 ORTHO05D009668 1.7e-11 72.4 66 54.5
RcHm_v2.0_Chr1g0325561 Rosa chinensis HOM05D007649 ORTHO05D009668 2.2e-11 72.0 65 55.4
PGSC0003DMG400014488 Solanum tuberosum HOM05D007649 ORTHO05D009668 2.2e-11 72.0 56 58.9
C02p59430 Brassica napus HOM05D007649 ORTHO05D009668 2.9e-11 71.6 65 53.8
BolC2t12006H Brassica oleracea HOM05D007649 ORTHO05D009668 2.9e-11 71.6 65 53.8
Medtr3g108310 Medicago truncatula HOM05D007649 ORTHO05D009668 3.8e-11 71.2 64 59.4
Psat5g025760 Pisum sativum HOM05D007649 ORTHO05D009668 3.8e-11 71.2 64 59.4
AUR62024825 Chenopodium quinoa HOM05D007649 ORTHO05D009668 6.5e-11 70.5 67 53.7
AUR62032390 Chenopodium quinoa HOM05D007649 ORTHO05D009668 6.5e-11 70.5 67 53.7
Glyma.06G074500 Glycine max HOM05D007649 ORTHO05D009668 8.5e-11 70.1 64 54.7
Hund02998 Selenicereus undatus HOM05D007649 ORTHO05D009668 1.4e-10 69.3 72 51.4
FAN06G3614 Fragaria x ananassa HOM05D007649 ORTHO05D009668 1.9e-10 68.9 57 57.9
Glyma.04G073400 Glycine max HOM05D007649 ORTHO05D009668 1.9e-10 68.9 64 54.7
ATR0037G059 Amborella trichopoda HOM05D007649 ORTHO05D009668 7.2e-10 67.0 63 54.0
SalBow4G3148 Salvia bowleyana HOM05D007649 ORTHO05D009668 7.2e-10 67.0 64 51.6
vmacro05350 Vaccinium macrocarpon HOM05D007649 ORTHO05D009668 9.4e-10 66.6 50 60.0
Ah.12g060320 Amaranthus hybridus HOM05D007649 ORTHO05D009668 1.6e-09 65.9 62 53.2
Phvul.009G099200 Phaseolus vulgaris HOM05D007649 ORTHO05D009668 3.6e-09 64.7 64 53.1
FAN03G3370 Fragaria x ananassa HOM05D007649 ORTHO05D009668 6.7e-08 60.5 73 42.5
Prupe.3G140100 Prunus persica HOM05D007649 ORTHO05D009668 1.1e-07 59.7 47 59.6
Gohir.A07G024600 Gossypium hirsutum HOM05D007649 ORTHO05D009668 2.2e-06 55.5 54 51.9
Os05g0180700 Oryza sativa ssp. japonica HOM05D007649 ORTHO05D009668 8.2e-06 53.5 64 42.2


User provided reference genes

Program Settings