Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0191800 Salix brachista HOM05D004019 ORTHO05D005136 0.0e+00 5197.9 2659 100.0
Potri.006G244900 Populus trichocarpa HOM05D004019 ORTHO05D005136 0.0e+00 4635.5 2597 92.6
Prupe.1G464500 Prunus persica HOM05D004019 ORTHO05D005136 0.0e+00 3734.5 2610 75.5
Atru.chr7.2305 Acer truncatum HOM05D004019 ORTHO05D005136 0.0e+00 3706.8 2610 75.7
COL.COLO4_18737 Corchorus olitorius HOM05D004019 ORTHO05D005136 0.0e+00 3700.6 2609 75.0
Thecc.09G037700 Theobroma cacao HOM05D004019 ORTHO05D005136 0.0e+00 3699.8 2607 75.2
Ciclev10007225m.g Citrus clementina HOM05D004019 ORTHO05D005136 0.0e+00 3692.1 2608 75.0
RcHm_v2.0_Chr6g0312581 Rosa chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3688.3 2616 74.7
TWI63G0705 Tripterygium wilfordii HOM05D004019 ORTHO05D005136 0.0e+00 3677.1 2611 74.8
Gorai.009G053000 Gossypium raimondii HOM05D004019 ORTHO05D005136 0.0e+00 3660.2 2608 73.8
Dinv14207 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 3648.2 2606 73.9
FvH4_2g30330 Fragaria vesca HOM05D004019 ORTHO05D005136 0.0e+00 3639.4 2614 73.9
MD15G1113500 Malus domestica HOM05D004019 ORTHO05D005136 0.0e+00 3638.2 2634 73.2
FAN24G2881 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 3617.8 2641 73.1
CiPaw.07G216600 Carya illinoinensis HOM05D004019 ORTHO05D005136 0.0e+00 3606.6 2616 73.2
Dinv30236 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 3585.0 2601 73.1
GSVIVG01035749001 Vitis vinifera HOM05D004019 ORTHO05D005136 0.0e+00 3579.6 2603 73.0
CANSAT25G1365 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 3547.7 2609 71.6
CANSAT56G4370 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 3542.3 2610 71.4
CSS0034867 Camellia sinensis var. sinensis HOM05D004019 ORTHO05D005136 0.0e+00 3521.5 2610 72.0
Actinidia13300 Actinidia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3508.0 2601 70.9
TAR624G1332 Trochodendron aralioides HOM05D004019 ORTHO05D005136 0.0e+00 3494.1 2649 69.9
Glyma.06G074700 Glycine max HOM05D004019 ORTHO05D005136 0.0e+00 3462.5 2603 70.7
Lj1g0020850 Lotus japonicus HOM05D004019 ORTHO05D005136 0.0e+00 3462.2 2606 70.4
Lalb_Chr11g0064021 Lupinus albus HOM05D004019 ORTHO05D005136 0.0e+00 3459.8 2608 70.3
Nn8g39221 Nelumbo nucifera HOM05D004019 ORTHO05D005136 0.0e+00 3457.5 2611 69.6
arahy.Tifrunner.gnm1.ann1.WYF2AC Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 3447.1 2617 70.1
Ca_15687_v3 Cicer arietinum L. HOM05D004019 ORTHO05D005136 0.0e+00 3442.5 2606 69.5
Psat5g025600 Pisum sativum HOM05D004019 ORTHO05D005136 0.0e+00 3417.1 2605 69.4
Medtr3g108360 Medicago truncatula HOM05D004019 ORTHO05D005136 0.0e+00 3386.3 2602 68.9
Eucgr.C01572 Eucalyptus grandis HOM05D004019 ORTHO05D005136 0.0e+00 3384.3 2604 69.0
TPR.G12417 Trifolium pratense HOM05D004019 ORTHO05D005136 0.0e+00 3380.5 2602 68.6
arahy.Tifrunner.gnm1.ann1.P4KF2E Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 3370.1 2616 69.1
CsaV3_3G046830 Cucumis sativus L. HOM05D004019 ORTHO05D005136 0.0e+00 3352.0 2603 67.9
THA.LOC104803772 Tarenaya hassleriana HOM05D004019 ORTHO05D005136 0.0e+00 3315.8 2624 68.2
Sed0026885 Sechium edule HOM05D004019 ORTHO05D005136 0.0e+00 3314.6 2600 67.5
Rhsim02G0185100 Rhododendron simsii HOM05D004019 ORTHO05D005136 0.0e+00 3311.9 2924 63.0
PGR031G1071 Punica granatum HOM05D004019 ORTHO05D005136 0.0e+00 3311.2 2608 67.4
Manes.03G064200 Manihot esculenta HOM05D004019 ORTHO05D005136 0.0e+00 3305.8 2135 80.4
Aqoxy7G01749 Aquilegia oxysepala HOM05D004019 ORTHO05D005136 0.0e+00 3274.2 2604 67.0
Migut.A00257 Erythranthe guttata HOM05D004019 ORTHO05D005136 0.0e+00 3239.9 2605 65.7
Phvul.009G099400 Phaseolus vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 3221.4 2267 74.2
PSO063G5962 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 3210.6 2632 65.9
MSTRG.25887 Avicennia marina HOM05D004019 ORTHO05D005136 0.0e+00 3196.4 2602 65.6
PSO782G0289 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 3194.8 2633 65.6
AT2G25730 Arabidopsis thaliana HOM05D004019 ORTHO05D005136 0.0e+00 3186.7 2612 65.7
AL4G17350 Arabidopsis lyrata HOM05D004019 ORTHO05D005136 0.0e+00 3171.7 2612 65.2
HanXRQChr17g0539391 Helianthus annuus HOM05D004019 ORTHO05D005136 0.0e+00 3157.5 2621 64.7
Sp4g05330 Schrenkiella parvula HOM05D004019 ORTHO05D005136 0.0e+00 3157.1 2611 65.1
CARHR115530 Cardamine hirsuta HOM05D004019 ORTHO05D005136 0.0e+00 3156.3 2609 65.4
Carub.0004s0550 Capsella rubella HOM05D004019 ORTHO05D005136 0.0e+00 3150.1 2613 64.9
Sopen08g021930 Solanum pennellii HOM05D004019 ORTHO05D005136 0.0e+00 3145.1 2604 64.4
Cc08_g08140 Coffea canephora HOM05D004019 ORTHO05D005136 0.0e+00 3122.8 2412 68.9
Sc09g0008920 Simmondsia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3116.3 2604 63.9
Lsat_1_v5_gn_3_27801 Lactuca sativa HOM05D004019 ORTHO05D005136 0.0e+00 3113.9 2650 64.5
C03p32450 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 3093.9 2612 64.2
ECA246G1280 Erigeron canadensis HOM05D004019 ORTHO05D005136 0.0e+00 3090.8 2620 64.0
A03p27040 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 3082.7 2612 64.1
BolC3t15586H Brassica oleracea HOM05D004019 ORTHO05D005136 0.0e+00 3078.5 2644 63.6
MBI03_g19627_MAGBIO Magnolia biondii HOM05D004019 ORTHO05D005136 0.0e+00 3067.7 2494 65.9
BraA03t11915Z Brassica rapa HOM05D004019 ORTHO05D005136 0.0e+00 3065.4 2645 63.5
ATR1120G055 Amborella trichopoda HOM05D004019 ORTHO05D005136 0.0e+00 3039.2 2622 62.2
Aa31LG5G9950 Aethionema arabicum HOM05D004019 ORTHO05D005136 0.0e+00 3004.2 2639 62.9
EL10Ac2g02527 Beta vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 2973.0 2611 61.9
AUR62024824 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 2964.1 2608 61.5
AUR62032391 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 2944.1 2610 61.2
QL12p030977 Quercus lobata HOM05D004019 ORTHO05D005136 0.0e+00 2936.0 1892 79.9
Thhalv10000005m.g Eutrema salsugineum HOM05D004019 ORTHO05D005136 0.0e+00 2925.2 2270 68.5
SGA_v2.0_scaffold280G46835 Striga asiatica HOM05D004019 ORTHO05D005136 0.0e+00 2869.0 2697 59.5
Lj8C607G10 Lonicera japonica HOM05D004019 ORTHO05D005136 0.0e+00 2817.7 1859 78.3
MELO3C003655.2 Cucumis melo HOM05D004019 ORTHO05D005136 0.0e+00 2803.1 2063 71.2
VMungo1309G1295 Vigna mungo HOM05D004019 ORTHO05D005136 0.0e+00 2647.5 1733 78.6
Gohir.D05G051300 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 2604.3 1626 81.9
FAN20G0521 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 2455.2 1923 68.8
Gohir.A05G049400 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 2321.6 1819 68.6
Zm00001eb161040 Zea mays HOM05D004019 ORTHO05D005136 0.0e+00 2297.3 2398 53.7
DCAR_006256 Daucus carota HOM05D004019 ORTHO05D005136 0.0e+00 2221.4 1784 66.9
Oeu063261.5 Olea europaea HOM05D004019 ORTHO05D005136 0.0e+00 2216.0 1701 68.7
unitig_747.g21875 Utricularia gibba HOM05D004019 ORTHO05D005136 0.0e+00 2038.8 1674 64.3
Pp3c19_2530 Physcomitrium patens HOM05D004019 ORTHO05D005136 0.0e+00 2036.9 2756 45.5
Mapoly0049s0060 Marchantia polymorpha HOM05D004019 ORTHO05D005136 0.0e+00 1982.2 2827 44.0
Hma1.2p1_0140F.1_g063760 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 0.0e+00 1766.1 1191 76.1
Hma1.2p1_0140F.1_g063770 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 0.0e+00 1738.8 1182 76.6
Cpa.g.sc205.26 Carica papaya HOM05D004019 ORTHO05D005136 0.0e+00 1697.6 1083 82.1
Ah.12g060340 Amaranthus hybridus HOM05D004019 ORTHO05D005136 0.0e+00 1696.8 1425 64.8
SMO172G0089 Selaginella moellendorffii HOM05D004019 ORTHO05D005136 0.0e+00 1615.5 2637 40.3
Solyc08g068010.2 Solanum lycopersicum HOM05D004019 ORTHO05D005136 0.0e+00 1614.4 1129 74.0
vmacro08818 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 0.0e+00 1563.5 1157 72.6
Peaxi162Scf00105g00818 Petunia axillaris HOM05D004019 ORTHO05D005136 0.0e+00 1548.5 1147 71.5
Nitab4.5_0000250g0110 Nicotiana tabacum HOM05D004019 ORTHO05D005136 0.0e+00 1465.3 1567 53.5
CBR_g31401 Chara braunii HOM05D004019 ORTHO05D005136 0.0e+00 1434.9 2374 39.9
SEGI_05898 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 0.0e+00 1413.3 1191 64.0
CDE10G0881 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 0.0e+00 1409.4 1712 48.1
AagrBONN_evm.TU.Sc2ySwM_340.130 Anthoceros agrestis HOM05D004019 ORTHO05D005136 0.0e+00 1403.7 2741 36.3
FAN20G1524 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 1375.5 837 84.2
HPP92_006443 Vanilla planifolia HOM05D004019 ORTHO05D005136 0.0e+00 1322.0 1177 61.3
Nitab4.5_0002393g0030 Nicotiana tabacum HOM05D004019 ORTHO05D005136 0.0e+00 1296.2 1562 49.2
Gohir.A05G049350 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 1208.4 728 84.2
CDE10G0547 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 0.0e+00 1194.9 894 67.8
vmacro11105 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 1.8e-301 1040.8 672 79.8
Haze_21654 Corylus avellana HOM05D004019 ORTHO05D005136 4.4e-292 1009.6 614 85.5
vmacro11102 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 6.2e-278 962.6 1089 52.5
HPP92_006442 Vanilla planifolia HOM05D004019 ORTHO05D005136 4.8e-270 936.4 1210 46.7
Haze_21655 Corylus avellana HOM05D004019 ORTHO05D005136 9.0e-269 932.2 623 77.8
SHI11646 Sapria himalayana HOM05D004019 ORTHO05D000023 2.7e-265 920.6 1049 51.7
Haze_21656 Corylus avellana HOM05D004019 ORTHO05D005136 1.2e-252 878.6 993 52.7
Ah.12g060350 Amaranthus hybridus HOM05D004019 ORTHO05D005136 2.7e-225 787.7 987 47.9
SHI11647 Sapria himalayana HOM05D004019 ORTHO05D005136 1.9e-205 721.8 936 46.2
QL12p030952 Quercus lobata HOM05D004019 ORTHO05D005136 3.0e-203 714.5 798 53.6
Cpa.g.sc205.24 Carica papaya HOM05D004019 ORTHO05D005136 1.1e-202 712.6 496 73.6
Nitab4.5_0000250g0120 Nicotiana tabacum HOM05D004019 ORTHO05D005136 1.4e-197 695.7 847 50.5
Solyc08g068040.3 Solanum lycopersicum HOM05D004019 ORTHO05D005136 2.4e-181 641.7 743 49.8
Hund02996 Selenicereus undatus HOM05D004019 ORTHO05D005136 6.9e-176 623.6 613 60.0
Peaxi162Scf00105g00812 Petunia axillaris HOM05D004019 ORTHO05D005136 1.2e-175 622.9 742 48.9
ClCG05G017320 Citrullus lanatus HOM05D004019 ORTHO05D005136 7.6e-175 620.2 746 48.5
Peaxi162Scf00105g00817 Petunia axillaris HOM05D004019 ORTHO05D005136 3.3e-170 604.7 489 63.2
Cpa.g.sc205.19 Carica papaya HOM05D004019 ORTHO05D005136 3.1e-168 598.2 537 61.3
vmacro11103 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 2.0e-159 568.9 548 56.9
Nitab4.5_0002393g0010 Nicotiana tabacum HOM05D004019 ORTHO05D005136 6.5e-158 563.9 364 76.9
DCAR_006255 Daucus carota HOM05D004019 ORTHO05D005136 1.7e-142 512.7 548 54.7
SalBow4G2655 Salvia bowleyana HOM05D004019 ORTHO05D005136 3.5e-127 461.8 529 51.2
vmacro11104 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 4.5e-111 408.3 239 87.9
SEGI_01785 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 5.7e-106 391.3 539 42.9
Os01g0593000 Oryza sativa ssp. japonica HOM05D004019 ORTHO05D005136 7.8e-95 354.4 243 71.6
Hma1.2p1_0140F.1_g063780 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 3.3e-93 349.0 204 88.2
vmacro11106 Vaccinium macrocarpon HOM05D005362 ORTHO05D006895 1.5e-90 340.1 229 72.1
unitig_747.g21874 Utricularia gibba HOM05D004019 ORTHO05D005136 3.9e-86 325.5 348 52.6
Haze_21653 Corylus avellana HOM05D004019 ORTHO05D005136 5.0e-86 325.1 222 75.2
Cfa013229 Carpinus fangiana HOM05D004019 ORTHO05D005136 3.6e-84 318.9 207 78.3
Cpa.g.sc205.16 Carica papaya HOM05D004019 ORTHO05D005136 6.6e-78 298.1 323 55.1
Nitab4.5_0000250g0090 Nicotiana tabacum HOM05D004019 ORTHO05D005136 6.6e-78 298.1 159 90.6
SEGI_29718 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 3.0e-70 272.7 158 82.9
Ah.12g060330 Amaranthus hybridus HOM05D004019 ORTHO05D005136 2.5e-69 269.6 159 79.9
SHI11644 Sapria himalayana HOM05D004019 ORTHO05D000014 5.2e-67 261.9 238 59.2
DCAR_006257 Daucus carota HOM05D004019 ORTHO05D005136 2.8e-60 239.6 130 90.8
Cc08_g08730 Coffea canephora HOM05D000021 ORTHO05D000010 3.1e-59 236.1 320 45.9
DCAR_006254 Daucus carota HOM05D004019 ORTHO05D005136 6.9e-59 235.0 318 46.2
Cc00_g31360 Coffea canephora HOM05D004019 ORTHO05D005136 1.5e-58 233.8 319 46.4
unitig_747.g21873 Utricularia gibba HOM05D004019 ORTHO05D005136 3.4e-50 206.1 321 41.4
Nitab4.5_0000250g0100 Nicotiana tabacum HOM05D004019 ORTHO05D005136 3.2e-48 199.5 338 38.5
SHI11640 Sapria himalayana HOM05D004019 ORTHO05D000023 4.2e-48 199.1 255 45.9
PRCOL_00001920 Prasinoderma coloniale HOM05D004019 ORTHO05D005136 7.9e-47 194.9 1904 22.4
HanXRQChr03g0075941 Helianthus annuus HOM05D004019 ORTHO05D005136 1.1e-37 164.5 105 76.2
Hma1.2p1_0140F.1_g063800 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 1.5e-37 164.1 116 73.3
AUR62038490 Chenopodium quinoa HOM05D004019 ORTHO05D005136 8.2e-36 158.3 116 75.9
Solyc08g068030.1 Solanum lycopersicum HOM05D004019 ORTHO05D005136 1.1e-29 137.9 143 51.0
MD00G1060000 Malus domestica HOM05D004019 ORTHO05D005136 1.3e-28 134.4 101 76.2
MD08G1211900 Malus domestica HOM05D004019 ORTHO05D005136 1.3e-28 134.4 101 76.2
Prupe.5G099400 Prunus persica HOM05D004019 ORTHO05D005136 4.8e-28 132.5 87 74.7
Prupe.5G112400 Prunus persica HOM05D004019 ORTHO05D005136 7.7e-26 125.2 117 60.7
PGR042G0250 Punica granatum HOM05D004019 ORTHO05D005136 1.2e-23 117.9 188 38.3
Lsat_1_v5_gn_4_165520 Lactuca sativa HOM05D004019 ORTHO05D005136 1.4e-22 114.4 141 46.8
Medtr3g108370 Medicago truncatula HOM05D004019 ORTHO05D005136 5.9e-18 99.0 180 40.0
Actinidia14324 Actinidia chinensis HOM05D004019 ORTHO05D005136 1.3e-17 97.8 135 50.4
Hund02993 Selenicereus undatus HOM05D004019 ORTHO05D000004 8.5e-17 95.1 79 68.4
Actinidia36698 Actinidia chinensis HOM05D004019 ORTHO05D005136 9.4e-16 91.7 142 47.2
Cpa.g.sc205.23 Carica papaya HOM05D004019 ORTHO05D005136 1.2e-15 91.3 62 79.0
Actinidia31247 Actinidia chinensis HOM05D004019 ORTHO05D005136 2.7e-15 90.1 73 68.5
SHI11643 Sapria himalayana HOM05D004019 ORTHO05D035247 3.6e-15 89.7 81 55.6
FvH4_2g30290 Fragaria vesca HOM05D004019 ORTHO05D035247 4.7e-15 89.4 67 68.7
FAN24G2522 Fragaria x ananassa HOM05D004019 ORTHO05D035247 4.7e-15 89.4 67 68.7
Medtr3g107940 Medicago truncatula HOM05D004019 ORTHO05D000015 6.7e-14 85.5 104 48.1
TPR.G12424 Trifolium pratense HOM05D004019 ORTHO05D005136 6.7e-14 85.5 93 50.5
Oeu022768.1 Olea europaea HOM05D004019 ORTHO05D005136 1.1e-13 84.7 166 34.3
Haze_21651 Corylus avellana HOM05D004019 ORTHO05D005136 3.3e-13 83.2 47 85.1
Cc08_g08790 Coffea canephora HOM05D004019 ORTHO05D005136 3.7e-12 79.7 58 65.5
FvH4_2g30421 Fragaria vesca HOM05D004019 ORTHO05D035788 8.2e-12 78.6 75 57.3
Cc00_g28950 Coffea canephora HOM05D004019 ORTHO05D005136 1.4e-11 77.8 58 67.2
Potri.018G035601 Populus trichocarpa HOM05D004019 ORTHO05D005136 1.4e-11 77.8 62 66.1
Glyma.04G073626 Glycine max HOM05D004019 ORTHO05D005136 9.1e-11 75.1 51 72.5
Medtr3g109982 Medicago truncatula HOM05D000051 ORTHO05D000015 1.0e-09 71.6 257 30.4
Actinidia23592 Actinidia chinensis HOM05D004019 ORTHO05D005136 1.3e-09 71.2 79 59.5
Psat5g042320 Pisum sativum HOM05D000051 ORTHO05D000015 4.2e-08 66.2 82 46.3
Hund02997 Selenicereus undatus HOM05D004019 ORTHO05D005136 1.2e-07 64.7 48 64.6
TPR.G26502 Trifolium pratense HOM05D000051 ORTHO05D000015 2.3e-06 60.5 101 42.6
Nitab4.5_0005144g0040 Nicotiana tabacum HOM05D004019 ORTHO05D005136 4.0e-06 59.7 53 56.6


User provided reference genes

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